Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0663
(650 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 139 2e-33
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 134 5e-32
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 132 2e-31
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 132 3e-31
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 105 3e-23
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 101 5e-22
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 95 3e-20
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 93 1e-19
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 90 1e-18
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 90 1e-18
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 88 4e-18
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 85 4e-17
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 85 4e-17
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 85 5e-17
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 81 5e-16
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 79 2e-15
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 79 2e-15
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 78 4e-15
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 77 1e-14
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 74 1e-13
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 73 2e-13
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 71 5e-13
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 70 1e-12
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 68 5e-12
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 67 8e-12
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 65 4e-11
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 65 4e-11
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 64 6e-11
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 64 6e-11
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 64 8e-11
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 64 1e-10
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 64 1e-10
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 64 1e-10
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 63 2e-10
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 63 2e-10
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 62 2e-10
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 62 3e-10
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 60 9e-10
At5g51300.2 68418.m06360 splicing factor-related contains simila... 60 1e-09
At5g51300.1 68418.m06359 splicing factor-related contains simila... 60 1e-09
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 60 1e-09
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 59 2e-09
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 59 3e-09
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 58 4e-09
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 58 4e-09
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 58 4e-09
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 58 5e-09
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 58 5e-09
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 58 5e-09
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 56 2e-08
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 56 2e-08
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 55 5e-08
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 54 6e-08
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 54 6e-08
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 54 8e-08
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 54 8e-08
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 54 8e-08
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 54 1e-07
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 54 1e-07
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 53 1e-07
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 53 1e-07
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 53 1e-07
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 53 2e-07
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 52 3e-07
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 52 3e-07
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 52 3e-07
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 52 3e-07
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 52 4e-07
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 52 4e-07
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 52 4e-07
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 51 6e-07
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 51 6e-07
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 51 8e-07
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 51 8e-07
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 50 1e-06
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 50 1e-06
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 50 1e-06
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 50 1e-06
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 50 1e-06
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 50 1e-06
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 50 1e-06
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 50 2e-06
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 50 2e-06
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 50 2e-06
At1g32790.1 68414.m04042 RNA-binding protein, putative similar t... 50 2e-06
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 50 2e-06
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 49 2e-06
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 49 3e-06
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 49 3e-06
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 48 4e-06
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 48 5e-06
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 48 5e-06
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 48 7e-06
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 48 7e-06
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 47 9e-06
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 47 1e-05
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 47 1e-05
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 47 1e-05
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 47 1e-05
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 47 1e-05
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 46 2e-05
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 46 2e-05
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 46 2e-05
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 46 2e-05
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 46 2e-05
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 46 2e-05
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 46 3e-05
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 46 3e-05
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 46 3e-05
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 45 4e-05
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 45 4e-05
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 45 4e-05
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 45 4e-05
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 45 5e-05
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 44 7e-05
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 44 7e-05
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 44 7e-05
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 44 9e-05
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 44 9e-05
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 44 1e-04
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 44 1e-04
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 44 1e-04
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 44 1e-04
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 44 1e-04
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 44 1e-04
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 43 2e-04
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 43 2e-04
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 43 2e-04
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 43 2e-04
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 43 2e-04
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t... 43 2e-04
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 42 3e-04
At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing ... 42 3e-04
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 42 3e-04
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 42 3e-04
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 42 3e-04
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 42 4e-04
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 42 4e-04
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 42 4e-04
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 42 4e-04
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 42 4e-04
At4g10610.1 68417.m01735 RNA-binding protein, putative 42 5e-04
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 42 5e-04
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 42 5e-04
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 42 5e-04
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 41 6e-04
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 41 6e-04
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 41 8e-04
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 41 8e-04
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 41 8e-04
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 41 8e-04
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 40 0.001
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 40 0.001
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 40 0.001
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 40 0.001
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 40 0.001
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 40 0.002
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 40 0.002
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 40 0.002
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 40 0.002
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 39 0.003
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 39 0.003
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 39 0.003
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 38 0.004
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 38 0.004
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 38 0.004
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 38 0.004
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 38 0.004
At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-bindi... 38 0.004
At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing ... 38 0.006
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ... 38 0.006
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 38 0.008
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 36 0.018
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 36 0.018
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 36 0.018
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 36 0.018
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 36 0.023
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 36 0.023
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 36 0.023
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 36 0.031
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 35 0.041
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami... 35 0.041
At2g47310.1 68415.m05906 flowering time control protein-related ... 35 0.041
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 35 0.041
At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing ... 35 0.054
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 35 0.054
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 35 0.054
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 35 0.054
At5g24440.1 68418.m02880 RNA-binding protein, putative 34 0.094
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 34 0.094
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 34 0.094
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 34 0.094
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 33 0.16
At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing ... 33 0.16
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 33 0.16
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 33 0.22
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 33 0.22
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 33 0.22
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 33 0.22
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 32 0.29
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 32 0.38
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 32 0.38
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ... 31 0.66
At2g45260.1 68415.m05634 expressed protein contains Pfam profile... 31 0.66
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 31 0.88
At1g05400.1 68414.m00548 hypothetical protein contains Pfam prof... 30 1.5
At1g79100.1 68414.m09223 arginine/serine-rich protein-related si... 29 2.0
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 29 2.7
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 29 3.5
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 29 3.5
At2g35920.1 68415.m04409 helicase domain-containing protein simi... 29 3.5
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 28 4.7
At3g21215.1 68416.m02681 RNA-binding protein, putative contains ... 28 4.7
At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing ... 28 6.2
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 27 8.2
At3g24440.1 68416.m03067 fibronectin type III domain-containing ... 27 8.2
At1g66260.1 68414.m07522 RNA and export factor-binding protein, ... 27 8.2
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 139 bits (336), Expect = 2e-33
Identities = 66/172 (38%), Positives = 104/172 (60%)
Frame = +1
Query: 121 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXX 300
D + +++Y GN+ VTE+ L +F G ++ CK+IR+ + Y F+ +
Sbjct: 58 DPTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS-YGFVHYFDRRCASMA 116
Query: 301 XXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEI 480
+N R + + MKVNWA + G + DTS+H +IFVGDLSPE+ L ++F+ F
Sbjct: 117 IMTLNGRHIFGQPMKVNWAYATGQ--REDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSC 174
Query: 481 SNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTR 636
S+ R++ D +T +S+G+ FVSF + DA+ AI MNG+W+ SR IR NW+T+
Sbjct: 175 SDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATK 226
Score = 46.8 bits (106), Expect = 1e-05
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Frame = +1
Query: 361 SPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFV 540
+P N P+ T ++VG+LSPE+ L F G ++ + + + KG+ FV
Sbjct: 261 APENNPQFTT-----VYVGNLSPEVTQLDLHRLFYTLG----AGVIEEVRVQRDKGFGFV 311
Query: 541 SFVKKADAEAAIQAMNGQ-WLGSRSIRTNWSTRKPPA 648
+ +A AIQ N Q +L SR IR +W + P+
Sbjct: 312 RYNTHDEAALAIQMGNAQPFLFSRQIRCSWGNKPTPS 348
Score = 35.9 bits (79), Expect = 0.023
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Frame = +1
Query: 124 ESHPK--TLYVGNLDPSVTEVFLCTLFGQIGD--VKGCKIIREPGNDPYAFLEFTCHXXX 291
E++P+ T+YVGNL P VT++ L LF +G ++ ++ R+ G + F+ + H
Sbjct: 263 ENNPQFTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKG---FGFVRYNTHDEA 319
Query: 292 XXXXXXMNKRVVL-DKEMKVNWATSP 366
N + L ++++ +W P
Sbjct: 320 ALAIQMGNAQPFLFSRQIRCSWGNKP 345
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 134 bits (324), Expect = 5e-32
Identities = 68/172 (39%), Positives = 103/172 (59%)
Frame = +1
Query: 121 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXX 300
D S +++YVGN+ VTE L +F G V+ K+IR+ + Y F+ +
Sbjct: 54 DPSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS-YGFVHYFDRRSAALA 112
Query: 301 XXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEI 480
+N R + + +KVNWA + G + DTS+H +IFVGDLSPE+ L ++F+ F
Sbjct: 113 ILSLNGRHLFGQPIKVNWAYATGQ--REDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSC 170
Query: 481 SNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTR 636
S+ R++ D +T +S+G+ FVSF + DA+ AI MNG+WL SR IR NW+T+
Sbjct: 171 SDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWATK 222
Score = 41.1 bits (92), Expect = 6e-04
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
++VG+L+PE+ L F G ++ + + + KG+ FV + +A AIQ
Sbjct: 267 VYVGNLAPEVTQLDLHRYFHALG----AGVIEEVRVQRDKGFGFVRYNTHPEAALAIQMG 322
Query: 586 NGQ-WLGSRSIRTNWSTRKPP 645
N Q +L +R I+ +W + P
Sbjct: 323 NTQPYLFNRQIKCSWGNKPTP 343
Score = 34.3 bits (75), Expect = 0.071
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Frame = +1
Query: 139 TLYVGNLDPSVTEVFLCTLFGQIGD--VKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXM 312
T+YVGNL P VT++ L F +G ++ ++ R+ G + F+ + H
Sbjct: 266 TVYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQRDKG---FGFVRYNTHPEAALAIQMG 322
Query: 313 NKRVVL-DKEMKVNWATSP 366
N + L ++++K +W P
Sbjct: 323 NTQPYLFNRQIKCSWGNKP 341
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 132 bits (319), Expect = 2e-31
Identities = 66/176 (37%), Positives = 104/176 (59%), Gaps = 4/176 (2%)
Frame = +1
Query: 121 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXX 300
D + +++Y GN+ VTE+ L +F G ++ CK+IR+ + Y F+ +
Sbjct: 58 DPTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS-YGFVHYFDRRCASMA 116
Query: 301 XXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEI 480
+N R + + MKVNWA + G + DTS+H +IFVGDLSPE+ L ++F+ F
Sbjct: 117 IMTLNGRHIFGQPMKVNWAYATGQ--REDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSC 174
Query: 481 SN----CRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTR 636
S+ R++ D +T +S+G+ FVSF + DA+ AI MNG+W+ SR IR NW+T+
Sbjct: 175 SSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATK 230
Score = 46.8 bits (106), Expect = 1e-05
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Frame = +1
Query: 361 SPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFV 540
+P N P+ T ++VG+LSPE+ L F G ++ + + + KG+ FV
Sbjct: 265 APENNPQFTT-----VYVGNLSPEVTQLDLHRLFYTLG----AGVIEEVRVQRDKGFGFV 315
Query: 541 SFVKKADAEAAIQAMNGQ-WLGSRSIRTNWSTRKPPA 648
+ +A AIQ N Q +L SR IR +W + P+
Sbjct: 316 RYNTHDEAALAIQMGNAQPFLFSRQIRCSWGNKPTPS 352
Score = 35.9 bits (79), Expect = 0.023
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Frame = +1
Query: 124 ESHPK--TLYVGNLDPSVTEVFLCTLFGQIGD--VKGCKIIREPGNDPYAFLEFTCHXXX 291
E++P+ T+YVGNL P VT++ L LF +G ++ ++ R+ G + F+ + H
Sbjct: 267 ENNPQFTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKG---FGFVRYNTHDEA 323
Query: 292 XXXXXXMNKRVVL-DKEMKVNWATSP 366
N + L ++++ +W P
Sbjct: 324 ALAIQMGNAQPFLFSRQIRCSWGNKP 349
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 132 bits (318), Expect = 3e-31
Identities = 67/172 (38%), Positives = 103/172 (59%)
Frame = +1
Query: 121 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXX 300
D S +++YVGN+ VTE L +F G V+ CK+IR+ + Y F+ +
Sbjct: 49 DPSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS-YGFVHYFDRRSAGLA 107
Query: 301 XXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEI 480
+N R + + +KVNWA + G + DTS+H +IFVGDLSPE+ +L F+ +
Sbjct: 108 ILSLNGRHLFGQPIKVNWAYASGQ--REDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTC 165
Query: 481 SNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTR 636
S+ R++ D +T +S+G+ FVSF + DA+ AI + G+WLGSR IR NW+T+
Sbjct: 166 SDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATK 217
Score = 52.0 bits (119), Expect = 3e-07
Identities = 24/85 (28%), Positives = 46/85 (54%)
Frame = +1
Query: 376 PKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 555
P D S ++VG++ ++ +L+E FA G + +C+++R + Y FV + +
Sbjct: 46 PGFDPSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRK----EKSSYGFVHYFDR 101
Query: 556 ADAEAAIQAMNGQWLGSRSIRTNWS 630
A AI ++NG+ L + I+ NW+
Sbjct: 102 RSAGLAILSLNGRHLFGQPIKVNWA 126
Score = 44.4 bits (100), Expect = 7e-05
Identities = 25/98 (25%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Frame = +1
Query: 358 TSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAF 537
T+ G P+ + + + ++VG+L+PE+ L F G ++ + + + KG+ F
Sbjct: 247 TTNGEAPENN-AQYTTVYVGNLAPEVSQVDLHRHFHSLG----AGVIEEVRVQRDKGFGF 301
Query: 538 VSFVKKADAEAAIQAMN-GQWLGSRSIRTNWSTRKPPA 648
V + +A AIQ N +L R ++ +W ++ PA
Sbjct: 302 VRYSTHVEAALAIQMGNTHSYLSGRQMKCSWGSKPTPA 339
Score = 35.1 bits (77), Expect = 0.041
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Frame = +1
Query: 139 TLYVGNLDPSVTEVFLCTLFGQIGD--VKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXM 312
T+YVGNL P V++V L F +G ++ ++ R+ G + F+ ++ H
Sbjct: 261 TVYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRDKG---FGFVRYSTHVEAALAIQMG 317
Query: 313 NKRVVLD-KEMKVNWATSP 366
N L ++MK +W + P
Sbjct: 318 NTHSYLSGRQMKCSWGSKP 336
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 105 bits (252), Expect = 3e-23
Identities = 57/184 (30%), Positives = 92/184 (50%), Gaps = 6/184 (3%)
Frame = +1
Query: 112 NMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGN---DPYAFLEFTCH 282
N G ++L++G+L P + E +L +FG G+ K+IR N + Y F+EF H
Sbjct: 72 NPGSAGEIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNH 131
Query: 283 XXXXXXXXXMNKRVVLDKEM--KVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILRE 456
N + E ++NWA + + H +FVGDL+P++ ++L E
Sbjct: 132 ATAERNLQTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTE 191
Query: 457 AF-APFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWST 633
F A + + ++V D T +SKGY FV F +++ A+ MNGQ+ SR +RT +
Sbjct: 192 TFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAA 251
Query: 634 RKPP 645
K P
Sbjct: 252 NKKP 255
Score = 62.5 bits (145), Expect = 2e-10
Identities = 53/191 (27%), Positives = 83/191 (43%), Gaps = 18/191 (9%)
Frame = +1
Query: 124 ESHPKTLYVGNLDPSVTEVFLCTLFGQI-GDVKGCKII--REPGNDP-YAFLEFTCHXXX 291
E T++VG+L P VT+ L F + VKG K++ R G Y F+ F
Sbjct: 169 EGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQ 228
Query: 292 XXXXXXMNKRVVLDKEMKV--------------NWATSPGNQPKTDTSNHHHIFVGDLSP 429
MN + + M+ ++ + GN ++D +N IFVG +
Sbjct: 229 IRAMTEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTT-IFVGAVDQ 287
Query: 430 EIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSR 609
+ + L+ F FGE+ + +I K FV + +A AE A+ +NG LG +
Sbjct: 288 SVTEDDLKSVFGQFGELVHVKIPA------GKRCGFVQYANRACAEQALSVLNGTQLGGQ 341
Query: 610 SIRTNWSTRKP 642
SIR +W R P
Sbjct: 342 SIRLSWG-RSP 351
Score = 58.0 bits (134), Expect = 5e-09
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Frame = +1
Query: 367 GNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 546
G+Q +++GDL P ++ N L F GE + +++R+ Q S+GY F+ F
Sbjct: 69 GSQNPGSAGEIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEF 128
Query: 547 VKKADAEAAIQAMNGQWLGS--RSIRTNWS 630
V A AE +Q NG + S ++ R NW+
Sbjct: 129 VNHATAERNLQTYNGAPMPSSEQAFRLNWA 158
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 101 bits (241), Expect = 5e-22
Identities = 58/174 (33%), Positives = 94/174 (54%), Gaps = 6/174 (3%)
Frame = +1
Query: 136 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP--GN-DPYAFLEFTCHXXXXXXXX 306
+TL++G+L V E +L + F Q G++ K+IR G + Y F+EF H
Sbjct: 24 RTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQ 83
Query: 307 XMNKRVVLDKEM--KVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAF-APFGE 477
N + E+ ++NWA S G+ K D H IFVGDL+P++ +L+E F +
Sbjct: 84 TYNGTQMPGTELTFRLNWA-SFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSS 142
Query: 478 ISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRK 639
+ ++V DP T +SKGY FV F ++++ A+ MNG + +R +R + +T K
Sbjct: 143 VRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPK 196
Score = 50.4 bits (115), Expect = 1e-06
Identities = 27/75 (36%), Positives = 42/75 (56%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
I V +L + L++AF+ GE+ +I P T KGY +V F + AE A+Q M
Sbjct: 239 ISVANLDQNVTEEELKKAFSQLGEVIYVKI---PAT---KGYGYVQFKTRPSAEEAVQRM 292
Query: 586 NGQWLGSRSIRTNWS 630
GQ +G +++R +WS
Sbjct: 293 QGQVIGQQAVRISWS 307
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/77 (29%), Positives = 39/77 (50%)
Frame = +1
Query: 139 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNK 318
T+ V NLD +VTE L F Q+G+V KI P Y +++F M
Sbjct: 238 TISVANLDQNVTEEELKKAFSQLGEVIYVKI---PATKGYGYVQFKTRPSAEEAVQRMQG 294
Query: 319 RVVLDKEMKVNWATSPG 369
+V+ + ++++W+ +PG
Sbjct: 295 QVIGQQAVRISWSKNPG 311
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 95.5 bits (227), Expect = 3e-20
Identities = 55/183 (30%), Positives = 91/183 (49%), Gaps = 7/183 (3%)
Frame = +1
Query: 112 NMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP---GNDPYAFLEFTCH 282
N G S K+L++G+L + E ++ ++F Q G+ K+IR ++ Y F+EF H
Sbjct: 52 NPGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSH 111
Query: 283 XXXXXXXXXMNKRVVLDKEM--KVNWATSPGNQPKTDTSNHHH-IFVGDLSPEIETNILR 453
N + E ++NWA + + + T H IFVGDL+PE+ +L
Sbjct: 112 SVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLS 171
Query: 454 EAFAP-FGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWS 630
+ F +G + ++V D T +SKGY FV F + + A+ MNGQ+ +R +R +
Sbjct: 172 DTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPA 231
Query: 631 TRK 639
K
Sbjct: 232 ANK 234
Score = 67.3 bits (157), Expect = 8e-12
Identities = 55/191 (28%), Positives = 81/191 (42%), Gaps = 18/191 (9%)
Frame = +1
Query: 124 ESHPKTLYVGNLDPSVTEVFLCTLFGQI-GDVKGCKII--REPGNDP-YAFLEFTCHXXX 291
E T++VG+L P VT+ L F + G VKG K++ R G Y F+ F
Sbjct: 150 EGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQ 209
Query: 292 XXXXXXMNKRVVLDKEMKVNWATSPGNQPKT--------------DTSNHHHIFVGDLSP 429
MN + + M++ A + P + N+ IFVG L
Sbjct: 210 MRAMTEMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDA 269
Query: 430 EIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSR 609
+ + L+ F FGE+ + +I K FV + KA AE A+ +NG LG +
Sbjct: 270 NVTDDELKSIFGQFGELLHVKIP------PGKRCGFVQYANKASAEHALSVLNGTQLGGQ 323
Query: 610 SIRTNWSTRKP 642
SIR +W R P
Sbjct: 324 SIRLSWG-RSP 333
Score = 58.4 bits (135), Expect = 4e-09
Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Frame = +1
Query: 367 GNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 546
G+Q S+ +++GDL ++ N + FA GE ++ +++R+ T +S+GY F+ F
Sbjct: 49 GSQNPGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEF 108
Query: 547 VKKADAEAAIQAMNGQWLGS--RSIRTNWS 630
V + AE +Q NG + S ++ R NW+
Sbjct: 109 VSHSVAERVLQTYNGAPMPSTEQTFRLNWA 138
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 93.5 bits (222), Expect = 1e-19
Identities = 52/170 (30%), Positives = 87/170 (51%), Gaps = 3/170 (1%)
Frame = +1
Query: 115 MGDESHPKT-LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFTCHX 285
+ D++HP + LY G+LDP VTE L LF + +V ++ R+ YA++ F+
Sbjct: 41 VADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPN 100
Query: 286 XXXXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFA 465
+N + D+ +++ + P T S +IF+ +L I+ L E F+
Sbjct: 101 DAYRAMEALNYTPLFDRPIRIMLSN---RDPSTRLSGKGNIFIKNLDASIDNKALFETFS 157
Query: 466 PFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 615
FG I +C++ D T +SKGY FV F K+ A+AAI +NG + + +
Sbjct: 158 SFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQV 206
Score = 54.4 bits (125), Expect = 6e-08
Identities = 40/181 (22%), Positives = 83/181 (45%), Gaps = 15/181 (8%)
Frame = +1
Query: 142 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP-GNDP-YAFLEFTCHXXXXXXXXXMN 315
+YV NL + E L FG+ G + ++R+ GN + F+ F C MN
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMN 290
Query: 316 KRVVLDKEMKVNWATSPGNQPKT-------------DTSNHHHIFVGDLSPEIETNILRE 456
+ D + V A + + + S ++++ +L ++ L+E
Sbjct: 291 GISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKE 350
Query: 457 AFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTR 636
F+ +G +++ +++ +PQ + S+G+ FV++ +A A+ MNG+ +G + + + R
Sbjct: 351 MFSEYGNVTSSKVMLNPQGM-SRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQR 409
Query: 637 K 639
K
Sbjct: 410 K 410
Score = 49.2 bits (112), Expect = 2e-06
Identities = 28/85 (32%), Positives = 44/85 (51%)
Frame = +1
Query: 388 TSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAE 567
T + ++ GDL P++ L + F + + R+ RD Q +S GYA+++F DA
Sbjct: 45 THPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFSNPNDAY 103
Query: 568 AAIQAMNGQWLGSRSIRTNWSTRKP 642
A++A+N L R IR S R P
Sbjct: 104 RAMEALNYTPLFDRPIRIMLSNRDP 128
Score = 31.1 bits (67), Expect = 0.66
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 112 NMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP 243
N ++S LY+ NLD SV + L +F + G+V K++ P
Sbjct: 324 NRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNP 367
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 90.2 bits (214), Expect = 1e-18
Identities = 53/177 (29%), Positives = 95/177 (53%), Gaps = 4/177 (2%)
Frame = +1
Query: 121 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND---PYAFLEFTCHXXX 291
+ + T+YVG LD ++E L LF Q G V + ++ + Y F+E+
Sbjct: 20 ERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDA 79
Query: 292 XXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPF 471
+N + K ++VN A+ Q K ++F+G+L P+++ +L + F+ F
Sbjct: 80 DYAIKVLNMIKLHGKPIRVNKAS----QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAF 135
Query: 472 GEI-SNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRK 639
G I SN +I+RDP T S+G+ F+S+ ++AAI++M GQ+L +R I +++ +K
Sbjct: 136 GVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKK 192
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 90.2 bits (214), Expect = 1e-18
Identities = 52/167 (31%), Positives = 85/167 (50%), Gaps = 3/167 (1%)
Frame = +1
Query: 124 ESHPKT-LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFTCHXXXX 294
++HP + LYVG+LDPSV E L LF Q+ V ++ R+ + YA++ F
Sbjct: 40 QTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDAS 99
Query: 295 XXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFG 474
+N + D+ +++ + P T S ++F+ +L I+ L E F+ FG
Sbjct: 100 RAMESLNYAPIRDRPIRIMLS---NRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFG 156
Query: 475 EISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 615
I +C++ D +SKGY FV F K+ A+AAI +NG L + +
Sbjct: 157 TILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQV 202
Score = 53.6 bits (123), Expect = 1e-07
Identities = 40/181 (22%), Positives = 84/181 (46%), Gaps = 15/181 (8%)
Frame = +1
Query: 142 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP-GND-PYAFLEFTCHXXXXXXXXXMN 315
+YV NL +T+ L FG+ GD+ ++++ GN + F+ F MN
Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMN 286
Query: 316 K----RVVL---------DKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILRE 456
VL D+E ++ + + ++++ +L + L+E
Sbjct: 287 GISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKE 346
Query: 457 AFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTR 636
F+ +G +++C+++ + Q L S+G+ FV++ +A A++ MNG+ +G + + + R
Sbjct: 347 MFSEYGNVTSCKVMMNSQGL-SRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQR 405
Query: 637 K 639
K
Sbjct: 406 K 406
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 88.2 bits (209), Expect = 4e-18
Identities = 54/181 (29%), Positives = 90/181 (49%), Gaps = 7/181 (3%)
Frame = +1
Query: 118 GDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP---GNDPYAFLEFTCHXX 288
G KTL+VG+L + E +L + F G+V K+IR ++ Y F+EF
Sbjct: 102 GSGDDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAA 161
Query: 289 XXXXXXXMNKRVV--LDKEMKVNWAT-SPGNQPKTDTSNHHHIFVGDLSPEIETNILREA 459
+ V+ D+ ++NWA+ S G + + +FVGDLSP++ +L E
Sbjct: 162 AEEVLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHET 221
Query: 460 FAP-FGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTR 636
F+ + + + ++V D T +SKGY FV F + + A+ MNG + +R +R +T
Sbjct: 222 FSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATP 281
Query: 637 K 639
K
Sbjct: 282 K 282
Score = 55.2 bits (127), Expect = 4e-08
Identities = 32/98 (32%), Positives = 53/98 (54%)
Frame = +1
Query: 349 NWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKG 528
N + G+Q +++N IFVG + P++ LR+ F+ FGE+ + +I KG
Sbjct: 305 NGSMGYGSQSDGESTNAT-IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIP------VGKG 357
Query: 529 YAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKP 642
FV F + AE AI+++NG +G ++R +W R P
Sbjct: 358 CGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWG-RSP 394
Score = 41.1 bits (92), Expect = 6e-04
Identities = 25/89 (28%), Positives = 40/89 (44%)
Frame = +1
Query: 124 ESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXX 303
ES T++VG +DP V + L F Q G+V KI P F++F
Sbjct: 317 ESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKI---PVGKGCGFVQFADRKSAEDAI 373
Query: 304 XXMNKRVVLDKEMKVNWATSPGNQPKTDT 390
+N V+ ++++W SP Q + D+
Sbjct: 374 ESLNGTVIGKNTVRLSWGRSPNKQWRGDS 402
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 85.0 bits (201), Expect = 4e-17
Identities = 55/175 (31%), Positives = 88/175 (50%), Gaps = 9/175 (5%)
Frame = +1
Query: 136 KTLYVGNLDPSVTEVFLCTLF--GQIGDVKGCKIIREPGN---DPYAFLEFTCHXXXXXX 300
KT++VG+L + E +L + F G ++ K+IR N + Y F+EF H
Sbjct: 101 KTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKV 160
Query: 301 XXXMNKRVV--LDKEMKVNWAT-SPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAP- 468
N + D+ ++NWA+ S G + + IFVGDLSP++ N+L E F+
Sbjct: 161 LREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEK 220
Query: 469 FGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWST 633
+ + ++V D T +SKGY FV F + + A+ MNG SR++R +T
Sbjct: 221 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPAT 275
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 85.0 bits (201), Expect = 4e-17
Identities = 55/175 (31%), Positives = 88/175 (50%), Gaps = 9/175 (5%)
Frame = +1
Query: 136 KTLYVGNLDPSVTEVFLCTLF--GQIGDVKGCKIIREPGN---DPYAFLEFTCHXXXXXX 300
KT++VG+L + E +L + F G ++ K+IR N + Y F+EF H
Sbjct: 101 KTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKV 160
Query: 301 XXXMNKRVV--LDKEMKVNWAT-SPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAP- 468
N + D+ ++NWA+ S G + + IFVGDLSP++ N+L E F+
Sbjct: 161 LREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEK 220
Query: 469 FGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWST 633
+ + ++V D T +SKGY FV F + + A+ MNG SR++R +T
Sbjct: 221 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPAT 275
Score = 54.4 bits (125), Expect = 6e-08
Identities = 51/188 (27%), Positives = 83/188 (44%), Gaps = 20/188 (10%)
Frame = +1
Query: 139 TLYVGNLDPSVTEVFLCTLFGQ-IGDVKGCKIIREPG---NDPYAFLEFTCHXXXXXXXX 306
+++VG+L P V++ L F + VK K++ + + Y F+ F
Sbjct: 198 SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 257
Query: 307 XMNKRVVLDKEMKVNWAT---SPGNQ-------------PKTDTSNHHHIFVGDLSPEIE 438
MN + M++ AT + G Q P+ D N IFVG L +
Sbjct: 258 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTT-IFVGGLDSSVT 316
Query: 439 TNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIR 618
L++ F FGEI + +I KG FV FV + +AE A++ +NG +G +++R
Sbjct: 317 DEDLKQPFNEFGEIVSVKIP------VGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVR 370
Query: 619 TNWSTRKP 642
+W R P
Sbjct: 371 LSWG-RNP 377
Score = 39.9 bits (89), Expect = 0.001
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = +1
Query: 139 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNK 318
T++VG LD SVT+ L F + G++ KI P F++F +N
Sbjct: 305 TIFVGGLDSSVTDEDLKQPFNEFGEIVSVKI---PVGKGCGFVQFVNRPNAEEALEKLNG 361
Query: 319 RVVLDKEMKVNWATSPGN-QPKTDTSN 396
V+ + ++++W +P N QP+ N
Sbjct: 362 TVIGKQTVRLSWGRNPANKQPRDKYGN 388
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 84.6 bits (200), Expect = 5e-17
Identities = 55/178 (30%), Positives = 88/178 (49%), Gaps = 7/178 (3%)
Frame = +1
Query: 136 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPG---NDPYAFLEFTCHXXXXXXXX 306
KTL+VG+L + E +L T F +V K+IR ++ Y F+EF
Sbjct: 119 KTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQ 178
Query: 307 XMNKRVVLDKEM--KVNWAT-SPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAP-FG 474
+ + + E ++NWA+ S G + ++ IFVGDL+P++ +L E FA +
Sbjct: 179 SFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYP 238
Query: 475 EISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPA 648
+ ++V D T +SKGY FV F + + A+ MNG + SR +R +T K A
Sbjct: 239 SVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAA 296
Score = 59.3 bits (137), Expect = 2e-09
Identities = 54/194 (27%), Positives = 84/194 (43%), Gaps = 26/194 (13%)
Frame = +1
Query: 139 TLYVGNLDPSVTE-VFLCTLFGQIGDVKGCKIIREPG---NDPYAFLEFTCHXXXXXXXX 306
+++VG+L P V++ V L T G+ VKG K++ + + Y F+ F
Sbjct: 214 SIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMT 273
Query: 307 XMNKRVVLDKEMKVNWATSP---------------------GNQPKTD-TSNHHHIFVGD 420
MN ++M+V AT GN +D SN+ IFVG
Sbjct: 274 EMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGG 333
Query: 421 LSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWL 600
L ++ L + F+ FGE+ + +I KG FV F + AE AI +NG +
Sbjct: 334 LDADVTEEDLMQPFSDFGEVVSVKIP------VGKGCGFVQFANRQSAEEAIGNLNGTVI 387
Query: 601 GSRSIRTNWSTRKP 642
G ++R +W R P
Sbjct: 388 GKNTVRLSWG-RSP 400
Score = 46.8 bits (106), Expect = 1e-05
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Frame = +1
Query: 112 NMGD-ESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXX 288
+M D ES+ T++VG LD VTE L F G+V KI P F++F
Sbjct: 318 SMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKI---PVGKGCGFVQFANRQS 374
Query: 289 XXXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSN 396
+N V+ ++++W SP Q ++D+ N
Sbjct: 375 AEEAIGNLNGTVIGKNTVRLSWGRSPNKQWRSDSGN 410
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 81.4 bits (192), Expect = 5e-16
Identities = 49/168 (29%), Positives = 85/168 (50%), Gaps = 2/168 (1%)
Frame = +1
Query: 142 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR-EPGNDP-YAFLEFTCHXXXXXXXXXMN 315
++V NL SVT L +F + G++ CK+ E G Y F++F +N
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLN 173
Query: 316 KRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRI 495
+V DKE+ V ++ K + + ++++ +L ++ ++LRE FA FG+I + I
Sbjct: 174 STIVADKEIYVGKFMKKTDRVKPE-EKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAI 232
Query: 496 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRK 639
+D L +GYAFV+F DA A + +NG GS+ + + +K
Sbjct: 233 AKDENRL-CRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKK 279
Score = 69.3 bits (162), Expect = 2e-12
Identities = 50/174 (28%), Positives = 79/174 (45%), Gaps = 5/174 (2%)
Frame = +1
Query: 109 ANMGDESHPKT--LYVGNLDPSVTEVFLCTLFGQ---IGDVKGCKIIREPGNDPYAFLEF 273
A+ S P T LYVG+L PSVTE L F + + V+ CK + Y + F
Sbjct: 13 ASSSGSSSPVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANF 72
Query: 274 TCHXXXXXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILR 453
N ++ K ++V W+ + + N +FV +L + +L+
Sbjct: 73 LSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPDARRNGVGN---VFVKNLPESVTNAVLQ 129
Query: 454 EAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 615
+ F FG I +C+ V + KS+GY FV F ++ A AAIQ +N + + I
Sbjct: 130 DMFKKFGNIVSCK-VATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEI 182
Score = 65.3 bits (152), Expect = 3e-11
Identities = 29/81 (35%), Positives = 46/81 (56%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
++VGDL P + IL +AFA F +++ R+ +D + +S Y + +F+ + DA AI+
Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85
Query: 586 NGQWLGSRSIRTNWSTRKPPA 648
N L + IR WS R P A
Sbjct: 86 NNSLLNGKMIRVMWSVRAPDA 106
Score = 37.1 bits (82), Expect = 0.010
Identities = 39/166 (23%), Positives = 69/166 (41%), Gaps = 15/166 (9%)
Frame = +1
Query: 142 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGN--DPYAFLEFTCHXXXXXXXXXMN 315
LY+ NLD V+E L F + G + I ++ YAF+ F +N
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVN 262
Query: 316 KRVVLDKEMKVNWATSPGNQP---KTDTSNHH----------HIFVGDLSPEIETNILRE 456
K + V A + + H +I+V +++ + LR+
Sbjct: 263 GTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRK 322
Query: 457 AFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQ 594
F+ G I++ +++ D + KSKG+ FV F +A A++ +GQ
Sbjct: 323 HFSQCGTITSTKLMCDEKG-KSKGFGFVCFSTPEEAIDAVKTFHGQ 367
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 79.4 bits (187), Expect = 2e-15
Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 7/168 (4%)
Frame = +1
Query: 136 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR--EPGN-DPYAFLEFTCHXXXXXXXX 306
+TL++G+L + E FL F G++ K+IR + G + Y F+EF H
Sbjct: 62 RTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQ 121
Query: 307 XMNKRVVL---DKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAF-APFG 474
N + D+ ++NWA S + K D S + IFVGDL+ ++ IL E F A +
Sbjct: 122 TFNNAPIPSFPDQLFRLNWA-SLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYP 180
Query: 475 EISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIR 618
+ ++V D T ++KGY FV F +++ A+ MNG +R +R
Sbjct: 181 SVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMR 228
Score = 57.2 bits (132), Expect = 9e-09
Identities = 53/192 (27%), Positives = 84/192 (43%), Gaps = 18/192 (9%)
Frame = +1
Query: 121 DESHPKTLYVGNLDPSVTEVFLCTLF-GQIGDVKGCKII--REPGNDP-YAFLEFTCHXX 288
D+S T++VG+L VT+ L F VKG K++ R G Y F+ F+
Sbjct: 150 DDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESE 209
Query: 289 XXXXXXXMNKRVVLDKEMKVNWATSP----GNQPKTDTS----------NHHHIFVGDLS 426
MN + M++ A S G + +S N+ +FVG L
Sbjct: 210 QIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLD 269
Query: 427 PEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGS 606
+ + L+ F+ +GEI + +I K FV F +K+ AE A++ +NG LG
Sbjct: 270 ASVTDDHLKNVFSQYGEIVHVKIPA------GKRCGFVQFSEKSCAEEALRMLNGVQLGG 323
Query: 607 RSIRTNWSTRKP 642
++R +W R P
Sbjct: 324 TTVRLSWG-RSP 334
Score = 53.6 bits (123), Expect = 1e-07
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Frame = +1
Query: 355 ATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYA 534
A P QP T +++GDL ++ N L FA GE+ + +++R+ QT + +GY
Sbjct: 48 AAPPSVQPTT-ADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYG 106
Query: 535 FVSFVKKADAEAAIQAMNGQWLGS---RSIRTNWST 633
F+ F A AE +Q N + S + R NW++
Sbjct: 107 FIEFASHAAAERVLQTFNNAPIPSFPDQLFRLNWAS 142
Score = 41.1 bits (92), Expect = 6e-04
Identities = 24/89 (26%), Positives = 42/89 (47%)
Frame = +1
Query: 139 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNK 318
T++VG LD SVT+ L +F Q G++ KI P F++F+ +N
Sbjct: 262 TVFVGGLDASVTDDHLKNVFSQYGEIVHVKI---PAGKRCGFVQFSEKSCAEEALRMLNG 318
Query: 319 RVVLDKEMKVNWATSPGNQPKTDTSNHHH 405
+ ++++W SP N+ D S ++
Sbjct: 319 VQLGGTTVRLSWGRSPSNKQSGDPSQFYY 347
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 79.4 bits (187), Expect = 2e-15
Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 7/168 (4%)
Frame = +1
Query: 136 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR--EPGN-DPYAFLEFTCHXXXXXXXX 306
+TL++G+L + E FL F G++ K+IR + G + Y F+EF H
Sbjct: 62 RTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQ 121
Query: 307 XMNKRVVL---DKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAF-APFG 474
N + D+ ++NWA S + K D S + IFVGDL+ ++ IL E F A +
Sbjct: 122 TFNNAPIPSFPDQLFRLNWA-SLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYP 180
Query: 475 EISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIR 618
+ ++V D T ++KGY FV F +++ A+ MNG +R +R
Sbjct: 181 SVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMR 228
Score = 53.6 bits (123), Expect = 1e-07
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Frame = +1
Query: 355 ATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYA 534
A P QP T +++GDL ++ N L FA GE+ + +++R+ QT + +GY
Sbjct: 48 AAPPSVQPTT-ADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYG 106
Query: 535 FVSFVKKADAEAAIQAMNGQWLGS---RSIRTNWST 633
F+ F A AE +Q N + S + R NW++
Sbjct: 107 FIEFASHAAAERVLQTFNNAPIPSFPDQLFRLNWAS 142
Score = 37.5 bits (83), Expect = 0.008
Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 18/143 (12%)
Frame = +1
Query: 121 DESHPKTLYVGNLDPSVTEVFLCTLF-GQIGDVKGCKII--REPGNDP-YAFLEFTCHXX 288
D+S T++VG+L VT+ L F VKG K++ R G Y F+ F+
Sbjct: 150 DDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESE 209
Query: 289 XXXXXXXMNKRVVLDKEMKVNWATS----PGNQPKTDTS----------NHHHIFVGDLS 426
MN + M++ A S G + +S N+ +FVG L
Sbjct: 210 QIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLD 269
Query: 427 PEIETNILREAFAPFGEISNCRI 495
+ + L+ F+ +GEI + +I
Sbjct: 270 ASVTDDHLKNVFSQYGEIVHVKI 292
Score = 31.9 bits (69), Expect = 0.38
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +1
Query: 139 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFT 276
T++VG LD SVT+ L +F Q G++ KI P F++F+
Sbjct: 262 TVFVGGLDASVTDDHLKNVFSQYGEIVHVKI---PAGKRCGFVQFS 304
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 78.2 bits (184), Expect = 4e-15
Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 9/175 (5%)
Frame = +1
Query: 136 KTLYVGNLDPSVTEVFLCTLF--GQIGDVKGCKIIREPGN---DPYAFLEFTCHXXXXXX 300
KT++VG+L + E +L + F + ++ K+IR N + Y F+EF H
Sbjct: 103 KTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKV 162
Query: 301 XXXMNKRVV--LDKEMKVNWAT-SPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAP- 468
N + D+ ++NWA+ S G + + IFVGDL+P++ +L E F+
Sbjct: 163 LQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEK 222
Query: 469 FGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWST 633
+ + ++V D T +SKGY FV F + + A+ MNG SR++R +T
Sbjct: 223 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPAT 277
Score = 55.6 bits (128), Expect = 3e-08
Identities = 51/188 (27%), Positives = 83/188 (44%), Gaps = 20/188 (10%)
Frame = +1
Query: 139 TLYVGNLDPSVTEVFLCTLFGQ-IGDVKGCKIIREPG---NDPYAFLEFTCHXXXXXXXX 306
+++VG+L P V++ L F + VK K++ + + Y F+ F
Sbjct: 200 SIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 259
Query: 307 XMNKRVVLDKEMKVNWAT---------SPGNQP-------KTDTSNHHHIFVGDLSPEIE 438
MN + M++ AT G P + DT N IFVG L +
Sbjct: 260 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTT-IFVGGLDSSVT 318
Query: 439 TNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIR 618
L++ F+ FGEI + +I KG FV FV + +AE A++ +NG +G +++R
Sbjct: 319 DEDLKQPFSEFGEIVSVKIP------VGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVR 372
Query: 619 TNWSTRKP 642
+W R P
Sbjct: 373 LSWG-RNP 379
Score = 39.9 bits (89), Expect = 0.001
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = +1
Query: 139 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNK 318
T++VG LD SVT+ L F + G++ KI P F++F +N
Sbjct: 307 TIFVGGLDSSVTDEDLKQPFSEFGEIVSVKI---PVGKGCGFVQFVNRPNAEEALEKLNG 363
Query: 319 RVVLDKEMKVNWATSPGN-QPKTDTSN 396
V+ + ++++W +P N QP+ N
Sbjct: 364 TVIGKQTVRLSWGRNPANKQPRDKYGN 390
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 76.6 bits (180), Expect = 1e-14
Identities = 34/82 (41%), Positives = 55/82 (67%)
Frame = +1
Query: 394 NHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAA 573
N + +F GDL E+ ++L +AFA F + +++RD +T K+KGY FVSF+ AD AA
Sbjct: 135 NDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAA 194
Query: 574 IQAMNGQWLGSRSIRTNWSTRK 639
++ MNG+++G+R I+ S+ K
Sbjct: 195 LKEMNGKYVGNRPIKLRKSSWK 216
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 73.7 bits (173), Expect = 1e-13
Identities = 49/185 (26%), Positives = 87/185 (47%), Gaps = 6/185 (3%)
Frame = +1
Query: 109 ANMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP---YAFLEFTC 279
A + S L+VGNL V L LF Q G V+ ++I D + F+ +
Sbjct: 141 AEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSS 200
Query: 280 HXXXXXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHH---HIFVGDLSPEIETNIL 450
N+ + + + VN A G++P+ + ++VG+L +++ L
Sbjct: 201 VDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRL 260
Query: 451 REAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWS 630
+ F+ G++ R+V D +T +S+G+ FV+ + AI A++GQ L R+IR N +
Sbjct: 261 EQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVA 320
Query: 631 TRKPP 645
+PP
Sbjct: 321 EERPP 325
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 72.9 bits (171), Expect = 2e-13
Identities = 48/170 (28%), Positives = 83/170 (48%), Gaps = 4/170 (2%)
Frame = +1
Query: 142 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGNDP-YAFLEFTCHXXXXXXXXXM 312
LY GNL +V L + + + +++ R+ G +AF+ + +
Sbjct: 87 LYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNL 146
Query: 313 NKRVVLDKEMKVNWATSPG-NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 489
+ L + +KVN+A P N+ H +FVG+LS + + L AF G++
Sbjct: 147 DGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGA 206
Query: 490 RIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRK 639
R+V D T +S+GY FV + KA+ E A+++++G L R+IR N + K
Sbjct: 207 RVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGK 256
Score = 34.7 bits (76), Expect = 0.054
Identities = 24/109 (22%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
Frame = +1
Query: 322 VVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVR 501
V L++E K + A++ + P + ++ G+L +++ L + F ++
Sbjct: 62 VKLEEEEKDDGASAVLDPPAAVNTK---LYFGNLPYNVDSATLAQIIQDFANPELVEVLY 118
Query: 502 DPQTLKSKGYAFVSFVKKADAEAAIQAMNG-QWLGSRSIRTNWSTRKPP 645
+ T +S+G+AFV+ D I ++G ++LG R+++ N++ + P
Sbjct: 119 NRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLG-RALKVNFADKPKP 166
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 71.3 bits (167), Expect = 5e-13
Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 3/154 (1%)
Frame = +1
Query: 142 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFTCHXXXXXXXXXMN 315
+++ NLD S+ L F G + CK+ +P Y F+++ +N
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLN 194
Query: 316 KRVVLDKEMKVN-WATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCR 492
++ DK++ V + P + +++V +LS + L + F FG ++C
Sbjct: 195 GMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCV 254
Query: 493 IVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQ 594
I+RD + KSKG+ FV+F DA A+ A+NG+
Sbjct: 255 IMRDGEG-KSKGFGFVNFENSDDAARAVDALNGK 287
Score = 71.3 bits (167), Expect = 5e-13
Identities = 52/189 (27%), Positives = 88/189 (46%), Gaps = 15/189 (7%)
Frame = +1
Query: 118 GDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR--EPGNDPYAFLEFTCHXXX 291
G++ +YV NL S+++ L +FG+ G C I+R E + + F+ F
Sbjct: 218 GEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDA 277
Query: 292 XXXXXXMNKRVVLDKEMKVNWATSPGNQPK-------------TDTSNHHHIFVGDLSPE 432
+N + DKE V A + D S +++V +L
Sbjct: 278 ARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDES 337
Query: 433 IETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRS 612
+ + LRE FAPFG I++C+++RDP + S+G FV+F +A AI MNG+ + ++
Sbjct: 338 VTDDKLREHFAPFGTITSCKVMRDPSGV-SRGSGFVAFSTPEEATRAITEMNGKMIVTKP 396
Query: 613 IRTNWSTRK 639
+ + RK
Sbjct: 397 LYVALAQRK 405
Score = 69.7 bits (163), Expect = 2e-12
Identities = 44/162 (27%), Positives = 76/162 (46%), Gaps = 3/162 (1%)
Frame = +1
Query: 139 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP---YAFLEFTCHXXXXXXXXX 309
+LYVG+LD +VT+ L F Q G V ++ R+ Y ++ +
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105
Query: 310 MNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 489
+N + + ++V ++ + K+ N IF+ +L I+ L E F+ FG I +C
Sbjct: 106 LNFMALNGRAIRVMYSVRDPSLRKSGVGN---IFIKNLDKSIDHKALHETFSAFGPILSC 162
Query: 490 RIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 615
++ DP +SKGY FV + A+ AI +NG L + +
Sbjct: 163 KVAVDPSG-QSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQV 203
Score = 59.3 bits (137), Expect = 2e-09
Identities = 28/79 (35%), Positives = 44/79 (55%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
++VGDL + + L EAF G++ + R+ RD T +S GY +V++ DA A+ +
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 586 NGQWLGSRSIRTNWSTRKP 642
N L R+IR +S R P
Sbjct: 107 NFMALNGRAIRVMYSVRDP 125
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 70.1 bits (164), Expect = 1e-12
Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 6/167 (3%)
Frame = +1
Query: 142 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP---YAFLEFTCHXXXXXXXXXM 312
L+VGNL V L LF Q G V+ ++I D + F+ +
Sbjct: 115 LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKF 174
Query: 313 NKRVVLDKEMKVNWATSPGNQPKTDTSNHH---HIFVGDLSPEIETNILREAFAPFGEIS 483
N V + + VN A G++P+ + I+VG+L ++++ L F+ G++
Sbjct: 175 NSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVV 234
Query: 484 NCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTN 624
+ R+V D +T +S+G+ FV + + AI A++GQ L R+I+ N
Sbjct: 235 DARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVN 281
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 68.1 bits (159), Expect = 5e-12
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 15/181 (8%)
Frame = +1
Query: 142 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFTCHXXXXXXXXXMN 315
+YV NL + T+ L T FGQ G + ++R+ + F+ F +N
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALN 286
Query: 316 KRVVLDKEMKVNWATSPGN----------QPKTDTSNHH---HIFVGDLSPEIETNILRE 456
+ DKE V A Q +D N +++V +L + LRE
Sbjct: 287 GKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRE 346
Query: 457 AFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTR 636
FA FG I++C+++RDP SKG FV+F ++A + MNG+ +G + + + R
Sbjct: 347 LFAEFGTITSCKVMRDPSG-TSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQR 405
Query: 637 K 639
K
Sbjct: 406 K 406
Score = 65.7 bits (153), Expect = 3e-11
Identities = 40/162 (24%), Positives = 81/162 (50%), Gaps = 3/162 (1%)
Frame = +1
Query: 139 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP---YAFLEFTCHXXXXXXXXX 309
+LYVG+LD +VT+ L F ++ V ++ R+ + Y ++ ++
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 310 MNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 489
+N + K +++ +++ + ++ N +FV +L ++ L EAF+ G I +C
Sbjct: 107 LNYSYLNGKMIRITYSSRDSSARRSGVGN---LFVKNLDKSVDNKTLHEAFSGCGTIVSC 163
Query: 490 RIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 615
++ D +S+GY FV F + A+ AI+ +NG+ L + I
Sbjct: 164 KVATDHMG-QSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQI 204
Score = 52.4 bits (120), Expect = 3e-07
Identities = 26/81 (32%), Positives = 44/81 (54%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
++VGDL + + L + F ++ + R+ RD T S GY +V++ DAE A+Q +
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 586 NGQWLGSRSIRTNWSTRKPPA 648
N +L + IR +S+R A
Sbjct: 108 NYSYLNGKMIRITYSSRDSSA 128
Score = 40.7 bits (91), Expect = 8e-04
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +1
Query: 118 GDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPG--NDPYAFLEFTCHXXX 291
G++ LYV NLD +VT+ L LF + G + CK++R+P + F+ F+
Sbjct: 322 GNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEA 381
Query: 292 XXXXXXMNKRVVLDKEMKV 348
MN ++V K + V
Sbjct: 382 SRVLNEMNGKMVGGKPLYV 400
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 67.3 bits (157), Expect = 8e-12
Identities = 40/168 (23%), Positives = 81/168 (48%), Gaps = 2/168 (1%)
Frame = +1
Query: 142 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP-YAFLEFTCHXXXXXXXXXMNK 318
LYV NLD S+T L +F G + CK++ E G + F++F ++
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSARSALHG 173
Query: 319 RVVLDKEMKV-NWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRI 495
+V K++ V + + +++V +L + + L F+ +G +S+ +
Sbjct: 174 SMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVV 233
Query: 496 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRK 639
+RD +S+G+ FV+F +A+ A++++ G LGS+ + + +K
Sbjct: 234 MRDGMG-RSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKK 280
Score = 62.1 bits (144), Expect = 3e-10
Identities = 43/173 (24%), Positives = 76/173 (43%), Gaps = 6/173 (3%)
Frame = +1
Query: 115 MGDESHPK---TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP---YAFLEFT 276
+G+ H +LYVG+L P VTE L F V + R YA++ F
Sbjct: 11 LGNHQHSSRFGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFD 70
Query: 277 CHXXXXXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILRE 456
+N + K M++ W+ + + +++V +L I ++ L
Sbjct: 71 SPFSASNAMTRLNHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLER 130
Query: 457 AFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 615
F PFG I +C++V + +SKG+ FV F + A +A A++G + + +
Sbjct: 131 MFCPFGSILSCKVVE--ENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKL 181
Score = 46.0 bits (104), Expect = 2e-05
Identities = 48/202 (23%), Positives = 84/202 (41%), Gaps = 15/202 (7%)
Frame = +1
Query: 79 VKKVIDRLR*ANMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE------ 240
V K I++ A M +YV NL +VT+ L TLF Q G V ++R+
Sbjct: 183 VAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSR 242
Query: 241 ---------PGNDPYAFLEFTCHXXXXXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTS 393
P N A +E C + K + D+ ++ N
Sbjct: 243 GFGFVNFCNPENAKKA-MESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNM 301
Query: 394 NHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAA 573
+++V +LS + LRE F +G+I + +++ + +SKG+ FV F +++ A
Sbjct: 302 RWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCH-ENGRSKGFGFVCFSNCEESKQA 360
Query: 574 IQAMNGQWLGSRSIRTNWSTRK 639
+ +NG + + I + RK
Sbjct: 361 KRYLNGFLVDGKPIVVRVAERK 382
Score = 44.8 bits (101), Expect = 5e-05
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 9/95 (9%)
Frame = +1
Query: 379 KTDTS---NHHH------IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGY 531
KT+T NH H ++VGDLSP++ L + F+ + + + R+ T KS Y
Sbjct: 5 KTETQALGNHQHSSRFGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCY 64
Query: 532 AFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTR 636
A+++F A A+ +N L +++R WS R
Sbjct: 65 AYINFDSPFSASNAMTRLNHSDLKGKAMRIMWSQR 99
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 64.9 bits (151), Expect = 4e-11
Identities = 31/91 (34%), Positives = 47/91 (51%)
Frame = +1
Query: 367 GNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 546
G + + + V +LS + L E F PFG ++ C + D +T S+G+ FVSF
Sbjct: 163 GGSDMRSRHDENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSF 222
Query: 547 VKKADAEAAIQAMNGQWLGSRSIRTNWSTRK 639
V + DA+ AI +NG + +R WST K
Sbjct: 223 VSREDAQRAINKLNGYGYDNLILRVEWSTPK 253
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 64.9 bits (151), Expect = 4e-11
Identities = 44/168 (26%), Positives = 78/168 (46%), Gaps = 2/168 (1%)
Frame = +1
Query: 142 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPG--NDPYAFLEFTCHXXXXXXXXXMN 315
++V NLD S+ LC +F G V CK+ R+ + Y F++F N
Sbjct: 33 VFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFHN 92
Query: 316 KRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRI 495
++ ++ + V S G K+ +++V +L L+ F FGEI++ +
Sbjct: 93 GTLIRNQHIHVCPFVSRGQWDKSRVFT--NVYVKNLVETATDADLKRLFGEFGEITSAVV 150
Query: 496 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRK 639
++D + KS+ + FV+F K A AI+ MNG + + + + RK
Sbjct: 151 MKDGEG-KSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRK 197
Score = 59.3 bits (137), Expect = 2e-09
Identities = 45/174 (25%), Positives = 80/174 (45%), Gaps = 16/174 (9%)
Frame = +1
Query: 142 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR--EPGNDPYAFLEFTCHXXXXXXXXXMN 315
+YV NL + T+ L LFG+ G++ +++ E + + F+ F MN
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMN 180
Query: 316 KRVVLDKEMKVNWATSPGNQPKT--------------DTSNHHHIFVGDLSPEIETNILR 453
VV +KE+ V A N+ + T +++V +L ++ L
Sbjct: 181 GVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLE 240
Query: 454 EAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 615
E F+ FG I++C+++ + SKG FV F +A A+ MNG+ +G++ I
Sbjct: 241 ELFSEFGTITSCKVMVHSNGI-SKGVGFVEFSTSEEASKAMLKMNGKMVGNKPI 293
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/80 (30%), Positives = 39/80 (48%)
Frame = +1
Query: 376 PKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 555
P S ++FV +L I+ L + F+ FG++ +C++ RD + SKGY FV F
Sbjct: 23 PSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGV-SKGYGFVQFYSD 81
Query: 556 ADAEAAIQAMNGQWLGSRSI 615
A NG + ++ I
Sbjct: 82 LSVYTACNFHNGTLIRNQHI 101
Score = 36.3 bits (80), Expect = 0.018
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +1
Query: 142 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKI-IREPG-NDPYAFLEFTCHXXXXXXXXXMN 315
LYV NLD SV L LF + G + CK+ + G + F+EF+ MN
Sbjct: 225 LYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMN 284
Query: 316 KRVVLDKEMKVNWA 357
++V +K + V+ A
Sbjct: 285 GKMVGNKPIYVSLA 298
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 64.5 bits (150), Expect = 6e-11
Identities = 31/81 (38%), Positives = 50/81 (61%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
+FVG LS + + L++AF FGE++ ++ D +T +S+G+ FVSF + A AI+ M
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 586 NGQWLGSRSIRTNWSTRKPPA 648
+G+ L R IR N +T + A
Sbjct: 97 DGKELNGRQIRVNLATERSSA 117
Score = 32.7 bits (71), Expect = 0.22
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Frame = +1
Query: 142 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGNDP-YAFLEFTCHXXXXXXXXXM 312
L+VG L + L F G+V +I RE G + F+ F+C M
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 313 NKRVVLDKEMKVNWATSPGNQPKT 384
+ + + ++++VN AT + P++
Sbjct: 97 DGKELNGRQIRVNLATERSSAPRS 120
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 64.5 bits (150), Expect = 6e-11
Identities = 31/81 (38%), Positives = 50/81 (61%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
+FVG LS + + L++AF FGE++ ++ D +T +S+G+ FVSF + A AI+ M
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 586 NGQWLGSRSIRTNWSTRKPPA 648
+G+ L R IR N +T + A
Sbjct: 97 DGKELNGRQIRVNLATERSSA 117
Score = 32.7 bits (71), Expect = 0.22
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Frame = +1
Query: 142 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGNDP-YAFLEFTCHXXXXXXXXXM 312
L+VG L + L F G+V +I RE G + F+ F+C M
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 313 NKRVVLDKEMKVNWATSPGNQPKT 384
+ + + ++++VN AT + P++
Sbjct: 97 DGKELNGRQIRVNLATERSSAPRS 120
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 64.1 bits (149), Expect = 8e-11
Identities = 26/75 (34%), Positives = 51/75 (68%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
+F+G ++ ++ + LREAF +GE+ + R++ D +T +S+G+ FV+F A +AIQA+
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQAL 101
Query: 586 NGQWLGSRSIRTNWS 630
+G+ L R ++ N++
Sbjct: 102 DGRDLHGRVVKVNYA 116
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 63.7 bits (148), Expect = 1e-10
Identities = 31/81 (38%), Positives = 51/81 (62%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
+F+G LS + LR+AFA FG++ + +++ D +T +S+G+ FV+F + A AAI M
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 586 NGQWLGSRSIRTNWSTRKPPA 648
+G+ L R IR N + +P A
Sbjct: 97 DGKELNGRHIRVNPANDRPSA 117
Score = 27.9 bits (59), Expect = 6.2
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Frame = +1
Query: 142 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFLEFTCHXXXXXXXXXM 312
L++G L + L F GDV K+I RE G + F+ F M
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 313 NKRVVLDKEMKVNWATSPGNQPK 381
+ + + + ++VN A + P+
Sbjct: 97 DGKELNGRHIRVNPANDRPSAPR 119
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 63.7 bits (148), Expect = 1e-10
Identities = 31/81 (38%), Positives = 51/81 (62%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
+F+G LS + LR+AFA FG++ + +++ D +T +S+G+ FV+F + A AAI M
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 586 NGQWLGSRSIRTNWSTRKPPA 648
+G+ L R IR N + +P A
Sbjct: 97 DGKELNGRHIRVNPANDRPSA 117
Score = 27.9 bits (59), Expect = 6.2
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Frame = +1
Query: 142 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFLEFTCHXXXXXXXXXM 312
L++G L + L F GDV K+I RE G + F+ F M
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 313 NKRVVLDKEMKVNWATSPGNQPK 381
+ + + + ++VN A + P+
Sbjct: 97 DGKELNGRHIRVNPANDRPSAPR 119
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 63.7 bits (148), Expect = 1e-10
Identities = 32/78 (41%), Positives = 52/78 (66%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
IFVG +S + LREAF+ +GE+ + +I+ D +T +S+G+AFV+F +A A+Q +
Sbjct: 36 IFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-L 94
Query: 586 NGQWLGSRSIRTNWSTRK 639
+GQ L R IR N++T +
Sbjct: 95 DGQDLHGRRIRVNYATER 112
Score = 29.9 bits (64), Expect = 1.5
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Frame = +1
Query: 142 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFLEFTCHXXXXXXXXXM 312
++VG + S E L F + G+V KII RE G +AF+ FT +
Sbjct: 36 IFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFT-STEEASNAMQL 94
Query: 313 NKRVVLDKEMKVNWATSPGN 372
+ + + + ++VN+AT G+
Sbjct: 95 DGQDLHGRRIRVNYATERGS 114
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 62.9 bits (146), Expect = 2e-10
Identities = 26/70 (37%), Positives = 48/70 (68%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
++VG+LSP ++LREAF+ +G + + ++RD T +S+G+ FV++ ++AEAA+ M
Sbjct: 5 VYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGM 64
Query: 586 NGQWLGSRSI 615
+G+ L R +
Sbjct: 65 DGKELNGRRV 74
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +1
Query: 142 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND---PYAFLEFTCH 282
+YVGNL P+ T+ L F G+V ++R+ D + F+ ++ H
Sbjct: 5 VYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSH 54
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 62.9 bits (146), Expect = 2e-10
Identities = 45/176 (25%), Positives = 83/176 (47%), Gaps = 13/176 (7%)
Frame = +1
Query: 136 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP---YAFLEFTCHXXXXXXXX 306
+ +Y+GN+ +VT L L + G V+ +++ + + + F
Sbjct: 76 RRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVE 135
Query: 307 XMNKRVVLDKEMKVNW-----ATSPG-----NQPKTDTSNHHHIFVGDLSPEIETNILRE 456
+N V +E+KVN A+SP ++ + + ++VG+L+ + +L
Sbjct: 136 KLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLEN 195
Query: 457 AFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTN 624
F+ G++ + ++ R P T KS G+ FV+F + D EAAI A+N L + IR N
Sbjct: 196 LFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVN 251
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Frame = +1
Query: 133 PKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP---YAFLEFTCHXXXXXXX 303
P +YVGNL +VT+ L LF + G V K+ R PG + F+ F+
Sbjct: 176 PYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAI 235
Query: 304 XXMNKRVVLDKEMKVNWA 357
+N ++ ++++VN A
Sbjct: 236 VALNNSLLEGQKIRVNKA 253
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 62.5 bits (145), Expect = 2e-10
Identities = 27/73 (36%), Positives = 47/73 (64%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
+++G LSP + + L++AF+ F ++ R++ + T +S+GY FV+F+ + A +AI AM
Sbjct: 33 LYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAM 92
Query: 586 NGQWLGSRSIRTN 624
NGQ L +I N
Sbjct: 93 NGQELNGFNISVN 105
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 62.1 bits (144), Expect = 3e-10
Identities = 28/73 (38%), Positives = 46/73 (63%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
IFVG LSPE+ L AF+ FG+I +C+I+ + T +S+G+ F++F + + +I+ M
Sbjct: 9 IFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREM 68
Query: 586 NGQWLGSRSIRTN 624
+G+ G R I N
Sbjct: 69 HGRDFGDRVISVN 81
Score = 33.1 bits (72), Expect = 0.16
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = +1
Query: 142 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFLEFTCHXXXXXXXXXM 312
++VG L P VT+ L F + GD+ C+I+ R+ G + F+ F M
Sbjct: 9 IFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREM 68
Query: 313 NKRVVLDKEMKVNWA 357
+ R D+ + VN A
Sbjct: 69 HGRDFGDRVISVNRA 83
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 60.5 bits (140), Expect = 9e-10
Identities = 27/78 (34%), Positives = 50/78 (64%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
+F+G LS ++ L++AF+ FGE++ RI D + +S+G+ FV F ++ DA +A AM
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAM 102
Query: 586 NGQWLGSRSIRTNWSTRK 639
+G+ L R +R +++ +
Sbjct: 103 DGKGLLGRPLRISFALER 120
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 60.1 bits (139), Expect = 1e-09
Identities = 30/95 (31%), Positives = 50/95 (52%)
Frame = +1
Query: 361 SPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFV 540
S +P + + ++++G L P +E + L F+ FGEI ++++D T SKGY FV
Sbjct: 467 STPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFV 526
Query: 541 SFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPP 645
+ A A+QAMNG R++ + + PP
Sbjct: 527 KYADVQMANTAVQAMNGYRFEGRTLAVRIAGKSPP 561
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 60.1 bits (139), Expect = 1e-09
Identities = 30/95 (31%), Positives = 50/95 (52%)
Frame = +1
Query: 361 SPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFV 540
S +P + + ++++G L P +E + L F+ FGEI ++++D T SKGY FV
Sbjct: 467 STPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFV 526
Query: 541 SFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPP 645
+ A A+QAMNG R++ + + PP
Sbjct: 527 KYADVQMANTAVQAMNGYRFEGRTLAVRIAGKSPP 561
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 60.1 bits (139), Expect = 1e-09
Identities = 52/180 (28%), Positives = 84/180 (46%), Gaps = 13/180 (7%)
Frame = +1
Query: 136 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPG--NDPYAFLEFTCHXXXXXXXXX 309
+ L+V NL S++ + LFGQ G V +IIR+ N +AF+
Sbjct: 95 RKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDK 154
Query: 310 MNKRVVLDKEMKVNWAT--------SPGNQPKTDTSN-HHHIFVGDLSPEIETNILREAF 462
+ V + + V++A SP + P + H ++V +L+ + + LRE F
Sbjct: 155 FDTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLAWKARSTHLRELF 214
Query: 463 --APFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTR 636
A F +S + DP+ +S GY FVSF + +AE AI +NG+ + R I +S R
Sbjct: 215 TAADFNPVSARVVFADPEG-RSSGYGFVSFATREEAENAITKLNGKEIMGRPITLKFSLR 273
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 59.3 bits (137), Expect = 2e-09
Identities = 25/70 (35%), Positives = 45/70 (64%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
+FV S + L++ F+ FG+++N +I+ + +T +S GY +V F K DA++A++AM
Sbjct: 79 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAM 138
Query: 586 NGQWLGSRSI 615
NG++ R I
Sbjct: 139 NGKFFDGRFI 148
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 58.8 bits (136), Expect = 3e-09
Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 15/181 (8%)
Frame = +1
Query: 142 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR--EPGNDPYAFLEFTCHXXXXXXXXXMN 315
+YV NL S T+ L FG+ G + +++ E + + F+ F +N
Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 90
Query: 316 KRVVLDKEMKVNWATSPGNQPK-------------TDTSNHHHIFVGDLSPEIETNILRE 456
DKE V A + D +++V +L P I L+E
Sbjct: 91 GHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKE 150
Query: 457 AFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTR 636
F+PFG +++ +++RDP SKG FV+F +A A+ ++G+ + S+ + + R
Sbjct: 151 IFSPFGTVTSSKVMRDPNG-TSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQR 209
Query: 637 K 639
K
Sbjct: 210 K 210
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/63 (31%), Positives = 41/63 (65%)
Frame = +1
Query: 403 HIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQA 582
+++V +L+ + L+ AF +G+I++ +++D + KSKG+ FV+F DA A+++
Sbjct: 30 NVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEG-KSKGFGFVNFENADDAARAVES 88
Query: 583 MNG 591
+NG
Sbjct: 89 LNG 91
Score = 37.1 bits (82), Expect = 0.010
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +1
Query: 121 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP 243
D+ LYV NLDPS+++ L +F G V K++R+P
Sbjct: 127 DKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDP 167
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 58.4 bits (135), Expect = 4e-09
Identities = 25/70 (35%), Positives = 44/70 (62%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
+FV LS LR+ F+PFG+I R++RD +T + KG+ F++F + DA A++++
Sbjct: 9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68
Query: 586 NGQWLGSRSI 615
+G+ + R I
Sbjct: 69 DGKIVDGRLI 78
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 58.4 bits (135), Expect = 4e-09
Identities = 28/75 (37%), Positives = 45/75 (60%)
Frame = +1
Query: 400 HHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ 579
+ FVG L+ + L AFA +G++ + +I+ D +T +S+G+ FV+F + + AI+
Sbjct: 8 YRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIE 67
Query: 580 AMNGQWLGSRSIRTN 624
MNGQ L RSI N
Sbjct: 68 GMNGQDLDGRSITVN 82
Score = 28.7 bits (61), Expect = 3.5
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Frame = +1
Query: 145 YVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFLEFTCHXXXXXXXXXMN 315
+VG L + + L T F Q GDV KII RE G + F+ F MN
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 316 KRVVLDKEMKVNWATSPGN 372
+ + + + VN A S G+
Sbjct: 71 GQDLDGRSITVNEAQSRGS 89
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 58.4 bits (135), Expect = 4e-09
Identities = 28/75 (37%), Positives = 45/75 (60%)
Frame = +1
Query: 400 HHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ 579
+ FVG L+ + L AFA +G++ + +I+ D +T +S+G+ FV+F + + AI+
Sbjct: 8 YRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIE 67
Query: 580 AMNGQWLGSRSIRTN 624
MNGQ L RSI N
Sbjct: 68 GMNGQDLDGRSITVN 82
Score = 28.7 bits (61), Expect = 3.5
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Frame = +1
Query: 145 YVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFLEFTCHXXXXXXXXXMN 315
+VG L + + L T F Q GDV KII RE G + F+ F MN
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 316 KRVVLDKEMKVNWATSPGN 372
+ + + + VN A S G+
Sbjct: 71 GQDLDGRSITVNEAQSRGS 89
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 58.0 bits (134), Expect = 5e-09
Identities = 41/181 (22%), Positives = 82/181 (45%), Gaps = 15/181 (8%)
Frame = +1
Query: 142 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP---YAFLEFTCHXXXXXXXXXM 312
LYVGNL ++T L +FG+ G V +I+ + D + F+
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177
Query: 313 NKRVVLDKEMKVNWATSPGN------QPKTDTSNH------HHIFVGDLSPEIETNILRE 456
N + + +KVN+ P + K +N H ++ G+L + + L++
Sbjct: 178 NSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKD 237
Query: 457 AFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTR 636
AF + +++ + T +S+G+ F+SF + ++A+ MNG + R++R N ++
Sbjct: 238 AFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLASE 297
Query: 637 K 639
+
Sbjct: 298 R 298
Score = 28.3 bits (60), Expect = 4.7
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
Frame = +1
Query: 97 RLR*ANMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFL 267
++R N P +Y GNL ++T L FG V G K+I R G + F+
Sbjct: 206 KIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFI 265
Query: 268 EFTCHXXXXXXXXXMNKRVVLDKEMKVNWAT 360
F MN V + +++N A+
Sbjct: 266 SFESAENVQSALATMNGVEVEGRALRLNLAS 296
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 58.0 bits (134), Expect = 5e-09
Identities = 27/84 (32%), Positives = 47/84 (55%)
Frame = +1
Query: 391 SNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEA 570
++ + + V +LS + L E F PFG ++ + D +T S+G+ FV+FV + DA+
Sbjct: 210 NDENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQR 269
Query: 571 AIQAMNGQWLGSRSIRTNWSTRKP 642
AI +NG + +R W+T +P
Sbjct: 270 AINKLNGYGYDNLILRVEWATPRP 293
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 58.0 bits (134), Expect = 5e-09
Identities = 26/75 (34%), Positives = 45/75 (60%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
++VG L+ E+ +IL AF PFG+I + + D K + + FV+F+++ DA AA+ M
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNM 74
Query: 586 NGQWLGSRSIRTNWS 630
+G L R + N++
Sbjct: 75 DGAELYGRVLTVNYA 89
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = +1
Query: 139 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 273
TLYVG L V E L F GD+K K + N + F
Sbjct: 14 TLYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGF 58
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 56.4 bits (130), Expect = 2e-08
Identities = 23/63 (36%), Positives = 42/63 (66%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
+FV S + L++ F+ FG+++N +I+ + +T +S GY +V F K DA++A++AM
Sbjct: 60 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAM 119
Query: 586 NGQ 594
NG+
Sbjct: 120 NGK 122
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 56.0 bits (129), Expect = 2e-08
Identities = 27/81 (33%), Positives = 45/81 (55%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
I V + E + + AF FGEI N + D ++ KGYA + + KK +A++AI AM
Sbjct: 97 ILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAM 156
Query: 586 NGQWLGSRSIRTNWSTRKPPA 648
NG L ++++ +W+ P+
Sbjct: 157 NGAELLTQNVSVDWAFSSGPS 177
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 54.8 bits (126), Expect = 5e-08
Identities = 27/74 (36%), Positives = 41/74 (55%)
Frame = +1
Query: 394 NHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAA 573
N + FVG L+ + + F FGE+ + +I+ D +T +SKG+ FV+F + A
Sbjct: 42 NEYRCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTA 101
Query: 574 IQAMNGQWLGSRSI 615
I MNGQ L R+I
Sbjct: 102 IDRMNGQELDGRNI 115
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 54.4 bits (125), Expect = 6e-08
Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 5/148 (3%)
Frame = +1
Query: 118 GDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGN-DPYAFLEFTCHXXXX 294
GD + P +++G L T FG+ G++ I+R+ P F T
Sbjct: 13 GDGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSV 72
Query: 295 XXXXXMNKRVVLDKEMKVNWATSP----GNQPKTDTSNHHHIFVGDLSPEIETNILREAF 462
+ V+ K++++ T P GNQ K + IFVG + + + L++ F
Sbjct: 73 VDKVIEDTHVINGKQVEIK-RTIPKGAGGNQSKDIKTKK--IFVGGIPSTVTEDELKDFF 129
Query: 463 APFGEISNCRIVRDPQTLKSKGYAFVSF 546
A +G + +++RD +T +S+G+ FV F
Sbjct: 130 AKYGNVVEHQVIRDHETNRSRGFGFVIF 157
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/65 (26%), Positives = 35/65 (53%)
Frame = +1
Query: 385 DTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADA 564
D ++ IF+G L + + + F +GEI++ I+RD T + +G+ F++F +
Sbjct: 14 DGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVV 73
Query: 565 EAAIQ 579
+ I+
Sbjct: 74 DKVIE 78
Score = 31.1 bits (67), Expect = 0.66
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +1
Query: 73 IDVKKVIDRLR*ANMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE 240
+++K+ I + N + K ++VG + +VTE L F + G+V ++IR+
Sbjct: 88 VEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRD 143
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 54.4 bits (125), Expect = 6e-08
Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 5/148 (3%)
Frame = +1
Query: 118 GDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGN-DPYAFLEFTCHXXXX 294
GD + P +++G L T FG+ G++ I+R+ P F T
Sbjct: 13 GDGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSV 72
Query: 295 XXXXXMNKRVVLDKEMKVNWATSP----GNQPKTDTSNHHHIFVGDLSPEIETNILREAF 462
+ V+ K++++ T P GNQ K + IFVG + + + L++ F
Sbjct: 73 VDKVIEDTHVINGKQVEIK-RTIPKGAGGNQSKDIKTKK--IFVGGIPSTVTEDELKDFF 129
Query: 463 APFGEISNCRIVRDPQTLKSKGYAFVSF 546
A +G + +++RD +T +S+G+ FV F
Sbjct: 130 AKYGNVVEHQVIRDHETNRSRGFGFVIF 157
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/65 (26%), Positives = 35/65 (53%)
Frame = +1
Query: 385 DTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADA 564
D ++ IF+G L + + + F +GEI++ I+RD T + +G+ F++F +
Sbjct: 14 DGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVV 73
Query: 565 EAAIQ 579
+ I+
Sbjct: 74 DKVIE 78
Score = 31.1 bits (67), Expect = 0.66
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +1
Query: 73 IDVKKVIDRLR*ANMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE 240
+++K+ I + N + K ++VG + +VTE L F + G+V ++IR+
Sbjct: 88 VEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRD 143
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 54.0 bits (124), Expect = 8e-08
Identities = 26/82 (31%), Positives = 47/82 (57%)
Frame = +1
Query: 379 KTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKA 558
+ D + IFVG LS ++ L F +G+I+ C+I+ T + +G+ F++F +
Sbjct: 5 ENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRR 64
Query: 559 DAEAAIQAMNGQWLGSRSIRTN 624
A+ AI+ M+G+ LG++ I N
Sbjct: 65 GADDAIKHMHGRELGNKVISVN 86
Score = 29.1 bits (62), Expect = 2.7
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +1
Query: 142 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFLEFTCHXXXXXXXXXM 312
++VG L VTE L + F + G + C+I+ R+ G + F+ FT M
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 313 NKRVVLDKEMKVNWA 357
+ R + +K + VN A
Sbjct: 74 HGRELGNKVISVNKA 88
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 54.0 bits (124), Expect = 8e-08
Identities = 26/82 (31%), Positives = 47/82 (57%)
Frame = +1
Query: 379 KTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKA 558
+ D + IFVG LS ++ L F +G+I+ C+I+ T + +G+ F++F +
Sbjct: 5 ENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRR 64
Query: 559 DAEAAIQAMNGQWLGSRSIRTN 624
A+ AI+ M+G+ LG++ I N
Sbjct: 65 GADDAIKHMHGRELGNKVISVN 86
Score = 29.1 bits (62), Expect = 2.7
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +1
Query: 142 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFLEFTCHXXXXXXXXXM 312
++VG L VTE L + F + G + C+I+ R+ G + F+ FT M
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 313 NKRVVLDKEMKVNWA 357
+ R + +K + VN A
Sbjct: 74 HGRELGNKVISVNKA 88
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 54.0 bits (124), Expect = 8e-08
Identities = 28/70 (40%), Positives = 42/70 (60%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
IFVG LSP + +L+EAF FG+I + +V D ++ S+G+ FV++ A A+QAM
Sbjct: 38 IFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAM 97
Query: 586 NGQWLGSRSI 615
+ L R I
Sbjct: 98 QNKELDGRII 107
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 53.6 bits (123), Expect = 1e-07
Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 1/136 (0%)
Frame = +1
Query: 142 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE-PGNDPYAFLEFTCHXXXXXXXXXMNK 318
++VG L T FG+ G++ I+++ P F T +
Sbjct: 44 IFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQDN 103
Query: 319 RVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIV 498
+++ K++++ G+ D IFVG + ++ + +E F FGE+ +I+
Sbjct: 104 HIIIGKQVEIKRTIPRGSMSSNDFKTKK-IFVGGIPSSVDDDEFKEFFMQFGELKEHQIM 162
Query: 499 RDPQTLKSKGYAFVSF 546
RD T +S+G+ FV++
Sbjct: 163 RDHSTGRSRGFGFVTY 178
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/58 (31%), Positives = 34/58 (58%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ 579
IFVG L+ E + + F +GEI++ I++D +T + +G+ FV++ + + IQ
Sbjct: 44 IFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQ 101
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 53.6 bits (123), Expect = 1e-07
Identities = 31/74 (41%), Positives = 40/74 (54%)
Frame = +1
Query: 367 GNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 546
GN TDT IFVG L+ E + + +R F FGEI ++ D T +SKGY FV+F
Sbjct: 12 GNNNTTDTKLTK-IFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTF 70
Query: 547 VKKADAEAAIQAMN 588
+ A A Q MN
Sbjct: 71 KEAEAAMRACQNMN 84
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 53.2 bits (122), Expect = 1e-07
Identities = 24/73 (32%), Positives = 45/73 (61%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
++VG L +I +R F+ +G + +IV D ++++ K Y FV+F + A+ AI+ M
Sbjct: 9 VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVND-RSVRGKCYGFVTFSNRRSADDAIEDM 67
Query: 586 NGQWLGSRSIRTN 624
+G+ +G R++R N
Sbjct: 68 DGKSIGGRAVRVN 80
Score = 28.3 bits (60), Expect = 4.7
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = +1
Query: 139 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGNDPYAFLEFTCHXXXXXXXXXM 312
++YVG L +TE + +F G V KI+ R Y F+ F+ M
Sbjct: 8 SVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIEDM 67
Query: 313 NKRVVLDKEMKVNWATSPGNQ 375
+ + + + ++VN T+ G +
Sbjct: 68 DGKSIGGRAVRVNDVTTRGGR 88
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 53.2 bits (122), Expect = 1e-07
Identities = 25/93 (26%), Positives = 50/93 (53%)
Frame = +1
Query: 367 GNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 546
G+ + + + + ++VG+LS ++ L F G++ R++ D + +SKG+ FV+
Sbjct: 238 GSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTL 297
Query: 547 VKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPP 645
+ + AI ++NG L R IR + + +PP
Sbjct: 298 SSSQEVQKAINSLNGADLDGRQIRVSEAEARPP 330
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/73 (32%), Positives = 39/73 (53%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
+FVG+LS +++ L + F G + ++ D T +S+G+ FV+ A+ EAA Q
Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160
Query: 586 NGQWLGSRSIRTN 624
NG R +R N
Sbjct: 161 NGYEFEGRPLRVN 173
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 53.2 bits (122), Expect = 1e-07
Identities = 25/93 (26%), Positives = 50/93 (53%)
Frame = +1
Query: 367 GNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 546
G+ + + + + ++VG+LS ++ L F G++ R++ D + +SKG+ FV+
Sbjct: 246 GSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTL 305
Query: 547 VKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPP 645
+ + AI ++NG L R IR + + +PP
Sbjct: 306 SSSQEVQKAINSLNGADLDGRQIRVSEAEARPP 338
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/73 (32%), Positives = 39/73 (53%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
+FVG+LS +++ L + F G + ++ D T +S+G+ FV+ A+ EAA Q
Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160
Query: 586 NGQWLGSRSIRTN 624
NG R +R N
Sbjct: 161 NGYEFEGRPLRVN 173
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 52.8 bits (121), Expect = 2e-07
Identities = 23/82 (28%), Positives = 48/82 (58%)
Frame = +1
Query: 400 HHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ 579
+ ++VG+LS ++ L F+ G++ R++ D + +SKG+ FV++ + + AI+
Sbjct: 204 NRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIK 263
Query: 580 AMNGQWLGSRSIRTNWSTRKPP 645
+++G L R IR + + +PP
Sbjct: 264 SLDGADLDGRQIRVSEAEARPP 285
Score = 48.0 bits (109), Expect = 5e-06
Identities = 23/73 (31%), Positives = 39/73 (53%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
+FVG+L +++ L + F G + ++ D T +S+G+ FV+ ++ EAA Q
Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152
Query: 586 NGQWLGSRSIRTN 624
NG L R +R N
Sbjct: 153 NGYELDGRPLRVN 165
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 52.4 bits (120), Expect = 3e-07
Identities = 27/78 (34%), Positives = 44/78 (56%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
+F+G LS L EAF+ G++ +IV D + +SKG+ FV+F +A+ A+
Sbjct: 36 LFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEF 95
Query: 586 NGQWLGSRSIRTNWSTRK 639
NGQ L R+I +++ K
Sbjct: 96 NGQQLNGRTIFVDYAKAK 113
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 52.4 bits (120), Expect = 3e-07
Identities = 43/145 (29%), Positives = 64/145 (44%), Gaps = 5/145 (3%)
Frame = +1
Query: 127 SHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGNDPYAFLEFTCHXXXXXX 300
S P L+VG + T FG+ G+V I+ R GN P F T
Sbjct: 63 SSPGKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGN-PRGFGFVTFADSAVAE 121
Query: 301 XXXMNKRVVLDKEMKVNWATSPGNQPKTD---TSNHHHIFVGDLSPEIETNILREAFAPF 471
V+ D+++ + T P TD S IFVG L P +E + L+ F +
Sbjct: 122 KVLEEDHVIDDRKVDLK-RTLPRGDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFCVY 180
Query: 472 GEISNCRIVRDPQTLKSKGYAFVSF 546
G+I +I+ D T +S+G+ FV+F
Sbjct: 181 GDIIEHQIMYDHHTGRSRGFGFVTF 205
Score = 37.1 bits (82), Expect = 0.010
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ 579
+FVG +S E F FGE+ + I+ D T +G+ FV+F A AE ++
Sbjct: 68 LFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLE 125
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 52.0 bits (119), Expect = 3e-07
Identities = 25/84 (29%), Positives = 41/84 (48%)
Frame = +1
Query: 364 PGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVS 543
P N P + +FV L+ E + ++ F +G I +V D T K KGYAF+
Sbjct: 126 PNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIE 185
Query: 544 FVKKADAEAAIQAMNGQWLGSRSI 615
++ D +AA + +GQ + R +
Sbjct: 186 YMHTRDMKAAYKQADGQKIDGRRV 209
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 52.0 bits (119), Expect = 3e-07
Identities = 32/77 (41%), Positives = 40/77 (51%)
Frame = +1
Query: 358 TSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAF 537
TS P DT+ H +FVG L+ E T+ +R F FGEI I+ D T KSKGY F
Sbjct: 4 TSYYRSPFGDTT-HTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGF 62
Query: 538 VSFVKKADAEAAIQAMN 588
V+F A A+ N
Sbjct: 63 VTFRDSDSATRAVADPN 79
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 51.6 bits (118), Expect = 4e-07
Identities = 28/82 (34%), Positives = 45/82 (54%)
Frame = +1
Query: 397 HHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAI 576
H IFV L + +T L EAF +GEI +C+ V D + KSKGY F+ + ++ A A+
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Query: 577 QAMNGQWLGSRSIRTNWSTRKP 642
+ + +GSR +++ P
Sbjct: 199 KQPQKK-IGSRMTACQLASKGP 219
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/75 (24%), Positives = 31/75 (41%)
Frame = +1
Query: 355 ATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYA 534
A S Q I+V ++ E++ L F+ FGEI + D T + KG+
Sbjct: 230 AVSAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFC 289
Query: 535 FVSFVKKADAEAAIQ 579
+ A+ A++
Sbjct: 290 LFVYKSSESAKRALE 304
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 51.6 bits (118), Expect = 4e-07
Identities = 28/82 (34%), Positives = 45/82 (54%)
Frame = +1
Query: 397 HHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAI 576
H IFV L + +T L EAF +GEI +C+ V D + KSKGY F+ + ++ A A+
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Query: 577 QAMNGQWLGSRSIRTNWSTRKP 642
+ + +GSR +++ P
Sbjct: 199 KQPQKK-IGSRMTACQLASKGP 219
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/75 (24%), Positives = 31/75 (41%)
Frame = +1
Query: 355 ATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYA 534
A S Q I+V ++ E++ L F+ FGEI + D T + KG+
Sbjct: 230 AVSAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFC 289
Query: 535 FVSFVKKADAEAAIQ 579
+ A+ A++
Sbjct: 290 LFVYKSSESAKRALE 304
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 51.6 bits (118), Expect = 4e-07
Identities = 28/82 (34%), Positives = 45/82 (54%)
Frame = +1
Query: 397 HHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAI 576
H IFV L + +T L EAF +GEI +C+ V D + KSKGY F+ + ++ A A+
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Query: 577 QAMNGQWLGSRSIRTNWSTRKP 642
+ + +GSR +++ P
Sbjct: 199 KQPQKK-IGSRMTACQLASKGP 219
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/75 (24%), Positives = 31/75 (41%)
Frame = +1
Query: 355 ATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYA 534
A S Q I+V ++ E++ L F+ FGEI + D T + KG+
Sbjct: 230 AVSAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFC 289
Query: 535 FVSFVKKADAEAAIQ 579
+ A+ A++
Sbjct: 290 LFVYKSSESAKRALE 304
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 51.2 bits (117), Expect = 6e-07
Identities = 31/77 (40%), Positives = 41/77 (53%)
Frame = +1
Query: 358 TSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAF 537
TS P DT+ + +FVG L+ E T+ +R F FGEI I+ D T KSKGY F
Sbjct: 4 TSYYRSPFGDTT-YTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGF 62
Query: 538 VSFVKKADAEAAIQAMN 588
V+F + A A+ N
Sbjct: 63 VTFRESDSATRAVADPN 79
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 51.2 bits (117), Expect = 6e-07
Identities = 31/77 (40%), Positives = 41/77 (53%)
Frame = +1
Query: 358 TSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAF 537
TS P DT+ + +FVG L+ E T+ +R F FGEI I+ D T KSKGY F
Sbjct: 4 TSYYRSPFGDTT-YTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGF 62
Query: 538 VSFVKKADAEAAIQAMN 588
V+F + A A+ N
Sbjct: 63 VTFRESDSATRAVADPN 79
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 50.8 bits (116), Expect = 8e-07
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Frame = +1
Query: 403 HIFVGDLSPEIETNILREAFAPFGEISNCRIV---RDPQTLKSKGYAFVSFVKKADAEAA 573
+++VG+LSP+++ N L F FG I++ +I+ D + + + FVSF+ +AD +AA
Sbjct: 180 NLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSFMNRADGQAA 239
Query: 574 IQAMNGQWLGSRSIRTNW 627
M G + ++ W
Sbjct: 240 KDEMQGIIVYEYELKIGW 257
Score = 39.9 bits (89), Expect = 0.001
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 9/87 (10%)
Frame = +1
Query: 121 DESHPKT--LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP-------YAFLEF 273
D+ P+T LYVGNL P V E FL FG+ G + KI+ P D F+ F
Sbjct: 172 DDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIM-WPRTDEEKRRQRNCGFVSF 230
Query: 274 TCHXXXXXXXXXMNKRVVLDKEMKVNW 354
M +V + E+K+ W
Sbjct: 231 MNRADGQAAKDEMQGIIVYEYELKIGW 257
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 50.8 bits (116), Expect = 8e-07
Identities = 24/70 (34%), Positives = 39/70 (55%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
I V +L + L+ F+ FGEI+ ++++D +SKGYAF+ F + DA AI+ M
Sbjct: 42 IMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETM 101
Query: 586 NGQWLGSRSI 615
+ + R I
Sbjct: 102 DRRMYNGRMI 111
Score = 28.7 bits (61), Expect = 3.5
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Frame = +1
Query: 142 LYVGNLDPSVTEVFL---CTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXM 312
+ V NL S +E FL + FG+I +VK K + YAF++FT M
Sbjct: 42 IMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETM 101
Query: 313 NKRVVLDKEMKVNWATSPGNQ 375
++R+ + + ++ A PG +
Sbjct: 102 DRRMYNGRMIYIDIA-KPGKR 121
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/76 (34%), Positives = 44/76 (57%)
Frame = +1
Query: 373 QPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVK 552
+P+ + S + +FV LS + LR AFA FGE+++ ++V D + SKG+ FV +
Sbjct: 49 RPQAEPSTN--LFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYAT 106
Query: 553 KADAEAAIQAMNGQWL 600
D+ I M+G++L
Sbjct: 107 LEDSAKGIAGMDGKFL 122
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/78 (33%), Positives = 44/78 (56%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
+F+G L ++ LR+ GEI R+++D + SKGYAFV+F K A+ AI+ +
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 177
Query: 586 NGQWLGSRSIRTNWSTRK 639
+ + ++IR + S K
Sbjct: 178 HSKEFKGKTIRCSLSETK 195
Score = 37.5 bits (83), Expect = 0.008
Identities = 34/157 (21%), Positives = 71/157 (45%), Gaps = 5/157 (3%)
Frame = +1
Query: 130 HPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGNDP-YAFLEFTCHXXXXXX 300
H +++G L V E L L +IG++ +++ R+ G+ YAF+ F
Sbjct: 114 HGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKA 173
Query: 301 XXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGE- 477
++ + K ++ + ++T N +F+G++ + R+ G
Sbjct: 174 IEELHSKEFKGKTIRCS---------LSETKN--RLFIGNIPKNWTEDEFRKVIEDVGPG 222
Query: 478 ISNCRIVRDP-QTLKSKGYAFVSFVKKADAEAAIQAM 585
+ N +++DP T +++G+AFV + A A+ + Q M
Sbjct: 223 VENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKM 259
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/74 (33%), Positives = 41/74 (55%)
Frame = +1
Query: 379 KTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKA 558
+ T +FV LS L++AFA FG++ + R++ D + +SKG+ FV++
Sbjct: 27 RCSTLTSPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIE 86
Query: 559 DAEAAIQAMNGQWL 600
DAE A MN ++L
Sbjct: 87 DAEKAKAEMNAKFL 100
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/75 (32%), Positives = 42/75 (56%)
Frame = +1
Query: 400 HHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ 579
+ FVG L+ L+ F+ FG++ + +I+ D ++ +S+G+ FV+F + AI+
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 580 AMNGQWLGSRSIRTN 624
MNG+ L R I N
Sbjct: 66 EMNGKELDGRVITVN 80
Score = 27.5 bits (58), Expect = 8.2
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Frame = +1
Query: 145 YVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFLEFTCHXXXXXXXXXMN 315
+VG L + + L F Q GDV KII RE G + F+ F MN
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 316 KRVVLDKEMKVNWATSPGN 372
+ + + + VN A S G+
Sbjct: 69 GKELDGRVITVNEAQSRGS 87
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/75 (32%), Positives = 42/75 (56%)
Frame = +1
Query: 400 HHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ 579
+ FVG L+ L+ F+ FG++ + +I+ D ++ +S+G+ FV+F + AI+
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 580 AMNGQWLGSRSIRTN 624
MNG+ L R I N
Sbjct: 66 EMNGKELDGRVITVN 80
Score = 27.5 bits (58), Expect = 8.2
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Frame = +1
Query: 145 YVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFLEFTCHXXXXXXXXXMN 315
+VG L + + L F Q GDV KII RE G + F+ F MN
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 316 KRVVLDKEMKVNWATSPGN 372
+ + + + VN A S G+
Sbjct: 69 GKELDGRVITVNEAQSRGS 87
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/75 (32%), Positives = 42/75 (56%)
Frame = +1
Query: 400 HHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ 579
+ FVG L+ L+ F+ FG++ + +I+ D ++ +S+G+ FV+F + AI+
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 580 AMNGQWLGSRSIRTN 624
MNG+ L R I N
Sbjct: 66 EMNGKELDGRVITVN 80
Score = 27.5 bits (58), Expect = 8.2
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Frame = +1
Query: 145 YVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFLEFTCHXXXXXXXXXMN 315
+VG L + + L F Q GDV KII RE G + F+ F MN
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 316 KRVVLDKEMKVNWATSPGN 372
+ + + + VN A S G+
Sbjct: 69 GKELDGRVITVNEAQSRGS 87
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 50.0 bits (114), Expect = 1e-06
Identities = 44/169 (26%), Positives = 72/169 (42%), Gaps = 9/169 (5%)
Frame = +1
Query: 115 MGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE-PGNDPYAFLEFTC---H 282
M +E K L+VG + +TE+ L TLF + V II+E P TC
Sbjct: 6 MENEERVK-LFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTRE 64
Query: 283 XXXXXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDT-----SNHHHIFVGDLSPEIETNI 447
NK+ + + + G + D + H +FVG L +
Sbjct: 65 DADKVINSFHNKKTLPGASSPLQVKYADGELERLDVLDCSCNPEHKLFVGMLPKNVSETE 124
Query: 448 LREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQ 594
++ F+ +G I + +I+R SKG F+ + K A AA++A+NG+
Sbjct: 125 VQSLFSEYGTIKDLQILRG-SLQTSKGCLFLKYESKEQAVAAMEALNGR 172
Score = 48.0 bits (109), Expect = 5e-06
Identities = 26/90 (28%), Positives = 47/90 (52%)
Frame = +1
Query: 349 NWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKG 528
N TS + +T+ ++F+ ++ E E L F PFG++ + ++ D T SK
Sbjct: 322 NNGTSIPSSLQTEGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKC 381
Query: 529 YAFVSFVKKADAEAAIQAMNGQWLGSRSIR 618
+ F+S+ +A A+ AI MNG L + ++
Sbjct: 382 FGFISYDSQAAAQNAINTMNGCQLSGKKLK 411
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/72 (33%), Positives = 41/72 (56%)
Frame = +1
Query: 400 HHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ 579
+ F+G L+ LR+AF +G + ++V D + +S+G+ F++F +K + AI
Sbjct: 7 YRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIA 66
Query: 580 AMNGQWLGSRSI 615
AMNG L R+I
Sbjct: 67 AMNGMDLDGRTI 78
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 49.6 bits (113), Expect = 2e-06
Identities = 26/79 (32%), Positives = 42/79 (53%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
+F+ LS LR AF FGE+ +I+ D + +SKGYAF+ + + A A++ M
Sbjct: 284 LFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEM 343
Query: 586 NGQWLGSRSIRTNWSTRKP 642
NG+ + I + + KP
Sbjct: 344 NGKIINGWMIVVDVAKTKP 362
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/68 (33%), Positives = 37/68 (54%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
IFVG L L++ F GE++ RI+++PQT KSKG AF+ F A+ A++ +
Sbjct: 216 IFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKEL 275
Query: 586 NGQWLGSR 609
+ +
Sbjct: 276 KSPMINGK 283
Score = 41.5 bits (93), Expect = 5e-04
Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 6/147 (4%)
Frame = +1
Query: 142 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP---GNDPYAFLEFTCHXXXXXXXXXM 312
++VG+LD +E L +FG +G+V +I++ P + AFL F
Sbjct: 216 IFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFA--------TVEQ 267
Query: 313 NKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFG--EISN 486
KR V KE+K T + ++ +FVG++ LRE +G + +
Sbjct: 268 AKRAV--KELKSPMINGK-KCGVTASQDNDTLFVGNICKIWTPEALREKLKHYGVENMDD 324
Query: 487 CRIVRDPQTLK-SKGYAFVSFVKKADA 564
+V D + ++GYAF+ F ++DA
Sbjct: 325 ITLVEDSNNVNMNRGYAFLEFSSRSDA 351
Score = 40.7 bits (91), Expect = 8e-04
Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 3/122 (2%)
Frame = +1
Query: 247 NDPYAFLEFTCHXXXXXXXXXMNKRVVL---DKEMKVNWATSPGNQPKTDTSNHHHIFVG 417
N YAFLEF+ + K+ V+ +K KV++ S + + IF+
Sbjct: 337 NRGYAFLEFSSRSDAMDAHKRLVKKDVMFGVEKPAKVSFTDSFLDLEDEIMAQVKTIFID 396
Query: 418 DLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQW 597
L P +R+ P+G++ + R+ + + K + FV+F A + + +N
Sbjct: 397 GLLPSWNEERVRDLLKPYGKLEKVELARNMPSARRKDFGFVTFDTHEAAVSCAKFINNSE 456
Query: 598 LG 603
LG
Sbjct: 457 LG 458
>At1g32790.1 68414.m04042 RNA-binding protein, putative similar to
RNA-binding protein GB:CAB40027 GI:4539439 from
[Arabidopsis thaliana]
Length = 358
Score = 49.6 bits (113), Expect = 2e-06
Identities = 53/175 (30%), Positives = 80/175 (45%), Gaps = 12/175 (6%)
Frame = +1
Query: 136 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND-PYAFLEFTCHXXXXXXXXXM 312
+T+YV +LD VTE L LF G V C+I +P + +AF+EFT
Sbjct: 173 RTVYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGDPNSVLRFAFIEFTDEEGAMTALNLS 232
Query: 313 NKRVVL--DKEMKVNWATSPGNQ---PKTDTSNH---HHIFVGDLSPEIETNILREAFAP 468
+ K + A +P N P+T+ I+ ++ ++ + ++ F
Sbjct: 233 GTMLGFYPVKVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQSDVKIFFES 292
Query: 469 F-GEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN--GQWLGSRSIRTN 624
F GE+ R++ D Q S AFV FV AE+AI A+N G LGS IR +
Sbjct: 293 FCGEVYRLRLLGDYQ--HSTRIAFVEFVM---AESAIAALNCSGVVLGSLPIRVS 342
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 49.6 bits (113), Expect = 2e-06
Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 5/165 (3%)
Frame = +1
Query: 115 MGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND-PYAFLEFTC---H 282
M +E K L+VG + +TE+ L TLF + V II+E P TC
Sbjct: 6 MENEERVK-LFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTRE 64
Query: 283 XXXXXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAF 462
NK+ + + + G + + H +FVG L + ++ F
Sbjct: 65 DADKVINSFHNKKTLPGASSPLQVKYADGELERLE----HKLFVGMLPKNVSETEVQSLF 120
Query: 463 APFGEISNCRIVRDP-QTLKSKGYAFVSFVKKADAEAAIQAMNGQ 594
+ +G I + +I+R QT SKG F+ + K A AA++A+NG+
Sbjct: 121 SEYGTIKDLQILRGSLQT--SKGCLFLKYESKEQAVAAMEALNGR 163
Score = 48.0 bits (109), Expect = 5e-06
Identities = 26/90 (28%), Positives = 47/90 (52%)
Frame = +1
Query: 349 NWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKG 528
N TS + +T+ ++F+ ++ E E L F PFG++ + ++ D T SK
Sbjct: 313 NNGTSIPSSLQTEGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKC 372
Query: 529 YAFVSFVKKADAEAAIQAMNGQWLGSRSIR 618
+ F+S+ +A A+ AI MNG L + ++
Sbjct: 373 FGFISYDSQAAAQNAINTMNGCQLSGKKLK 402
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 49.2 bits (112), Expect = 2e-06
Identities = 29/71 (40%), Positives = 41/71 (57%)
Frame = +1
Query: 370 NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 549
N P DT+ +FVG L+ E ++ LR+ F +GEI ++ D T +SKGY FV+F
Sbjct: 15 NSPFGDTT-FTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTF- 72
Query: 550 KKADAEAAIQA 582
D EAA +A
Sbjct: 73 --RDPEAARRA 81
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 48.8 bits (111), Expect = 3e-06
Identities = 35/161 (21%), Positives = 72/161 (44%)
Frame = +1
Query: 136 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMN 315
+ L+V N+D S+ + L LF Q GDV+ + N + + + ++
Sbjct: 211 RILFVRNVDSSIEDCELGVLFKQFGDVRALHTAGK--NRGFIMVSYYDIRAAQKAARALH 268
Query: 316 KRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRI 495
R++ +++ + ++ P PK + S+ ++V +L I L F+ +GEI R
Sbjct: 269 GRLLRGRKLDIRYSI-PKENPK-ENSSEGALWVNNLDSSISNEELHGIFSSYGEIREVR- 325
Query: 496 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIR 618
+T+ ++ F A+ A+Q +NG + R ++
Sbjct: 326 ----RTMHENSQVYIEFFDVRKAKVALQGLNGLEVAGRQLK 362
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 48.8 bits (111), Expect = 3e-06
Identities = 25/85 (29%), Positives = 44/85 (51%)
Frame = +1
Query: 361 SPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFV 540
S + P + + ++V LS + LR+ F FG + + +V D + KG+AF+
Sbjct: 64 SSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFL 123
Query: 541 SFVKKADAEAAIQAMNGQWLGSRSI 615
+ + +A AIQ M+G++L R I
Sbjct: 124 RYETEEEAMKAIQGMHGKFLDGRVI 148
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 48.4 bits (110), Expect = 4e-06
Identities = 22/77 (28%), Positives = 44/77 (57%)
Frame = +1
Query: 394 NHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAA 573
N +++VG + ++ L F+ +GEI + ++RD T KSKG+AF+++ + A
Sbjct: 34 NSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILA 93
Query: 574 IQAMNGQWLGSRSIRTN 624
+ +NG + R+I+ +
Sbjct: 94 VDNLNGALVLGRTIKVD 110
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 48.0 bits (109), Expect = 5e-06
Identities = 22/56 (39%), Positives = 37/56 (66%)
Frame = +1
Query: 448 LREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 615
LR+ FAPF R+++D QT + KG+ F++F + DA+ A++A+NG+ + R I
Sbjct: 87 LRQLFAPFA-----RLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLI 137
>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) (2 copies)
Length = 327
Score = 48.0 bits (109), Expect = 5e-06
Identities = 51/181 (28%), Positives = 87/181 (48%), Gaps = 13/181 (7%)
Frame = +1
Query: 121 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND-PYAFLEFT----CHX 285
++S +T+YV ++D SVTE L LF G V C+I +P + +AF+EF H
Sbjct: 136 EDSIRRTVYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSVLRFAFVEFADDQGAHE 195
Query: 286 XXXXXXXXMN---KRVVLDKE--MKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNIL 450
+ RV+ K + VN P ++ + + I+ ++ ++ +
Sbjct: 196 ALSLGGTMLGFYPVRVLPSKTAILPVNPTFLPRSEDEREMCT-RTIYCTNIDKKVSQADV 254
Query: 451 REAF-APFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN--GQWLGSRSIRT 621
R F + GE++ R++ D L S AFV F A A++A+ A+N G +GS+ IR
Sbjct: 255 RNFFESACGEVTRLRLLGD--QLHSTRIAFVEF---ALADSALSALNCSGMVVGSQPIRV 309
Query: 622 N 624
+
Sbjct: 310 S 310
Score = 35.9 bits (79), Expect = 0.023
Identities = 21/83 (25%), Positives = 40/83 (48%)
Frame = +1
Query: 370 NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 549
++ + + S ++V D+ + L F+ G++ +CRI DP ++ +AFV F
Sbjct: 131 SKAQREDSIRRTVYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSVLR--FAFVEFA 188
Query: 550 KKADAEAAIQAMNGQWLGSRSIR 618
A A+ ++ G LG +R
Sbjct: 189 DDQGAHEAL-SLGGTMLGFYPVR 210
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 47.6 bits (108), Expect = 7e-06
Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 4/166 (2%)
Frame = +1
Query: 112 NMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPY---AFLEFTCH 282
++ D S L+VG++ + TE + F Q G+V +I++ F+++
Sbjct: 112 DVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATS 171
Query: 283 XXXXXXXXXMNKRVVLDKEM-KVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREA 459
++ ++ L V + G + + T +FVG L+ + + E
Sbjct: 172 KDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFK-LFVGSLNKQATEKEVEEI 230
Query: 460 FAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQW 597
F FG + + ++RD + +S+G FV + K A AAI +NG +
Sbjct: 231 FLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAAIDGLNGTY 275
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 47.6 bits (108), Expect = 7e-06
Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 4/166 (2%)
Frame = +1
Query: 112 NMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPY---AFLEFTCH 282
++ D S L+VG++ + TE + F Q G+V +I++ F+++
Sbjct: 112 DVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATS 171
Query: 283 XXXXXXXXXMNKRVVLDKEM-KVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREA 459
++ ++ L V + G + + T +FVG L+ + + E
Sbjct: 172 KDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFK-LFVGSLNKQATEKEVEEI 230
Query: 460 FAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQW 597
F FG + + ++RD + +S+G FV + K A AAI +NG +
Sbjct: 231 FLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAAIDGLNGTY 275
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 47.2 bits (107), Expect = 9e-06
Identities = 24/79 (30%), Positives = 38/79 (48%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
+ V L I L EAF+ G + C +V + + + +G+AFV F + D AI+
Sbjct: 22 VCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELK 81
Query: 586 NGQWLGSRSIRTNWSTRKP 642
NG +G R I + +P
Sbjct: 82 NGSTVGGRRITVKQAAHRP 100
Score = 44.8 bits (101), Expect = 5e-05
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
Frame = +1
Query: 337 EMKVN--WATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQ 510
E+K N WA G + + + + +L + + + ++ F+ G + + I ++ +
Sbjct: 310 EVKGNLIWARQLGGEGSK--AQKWKLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFE 367
Query: 511 TLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRK 639
T KG+AFV F K DA AI+ NG G R I +W+ K
Sbjct: 368 TGLPKGFAFVKFTCKKDAANAIKKFNGHMFGKRPIAVDWAVPK 410
Score = 35.1 bits (77), Expect = 0.041
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAE-AAIQA 582
+F+ +L ++ +++ F FGE+ + +V T + +G AFV F K ADA AAI A
Sbjct: 563 LFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKF-KTADASVAAISA 621
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Frame = +1
Query: 118 GDESHPK---TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP---YAFLEF 273
G+E P T+ V L S+T L F ++G V+ C ++ G+D +AF++F
Sbjct: 11 GEEKSPHAAATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKF 68
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 46.8 bits (106), Expect = 1e-05
Identities = 26/81 (32%), Positives = 41/81 (50%)
Frame = +1
Query: 346 VNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSK 525
V + S + ++T H + V L + + +LR F+ I + R+VRD T S+
Sbjct: 440 VGLSNSAAGKRISETGPTHVLVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSR 499
Query: 526 GYAFVSFVKKADAEAAIQAMN 588
G+AFV F DA A++A N
Sbjct: 500 GFAFVHFYSVEDATKALEATN 520
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = +1
Query: 370 NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 546
NQ + + V LS + L + A +G + + R++R+ + S+G+AF+ F
Sbjct: 288 NQDHFSATPSATVVVKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDF 346
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 46.8 bits (106), Expect = 1e-05
Identities = 20/63 (31%), Positives = 38/63 (60%)
Frame = +1
Query: 391 SNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEA 570
S+ +F+G +S + + N+LRE F+ FGE+ ++R+ T + +G+ FV+F A +
Sbjct: 3 SDQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDR 62
Query: 571 AIQ 579
+Q
Sbjct: 63 VLQ 65
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 46.8 bits (106), Expect = 1e-05
Identities = 23/63 (36%), Positives = 36/63 (57%)
Frame = +1
Query: 391 SNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEA 570
S+ +IFV L + L+ AF +GEI+ C +V D T ++KG+ FV F + A A
Sbjct: 160 SSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARA 219
Query: 571 AIQ 579
A++
Sbjct: 220 ALK 222
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 46.8 bits (106), Expect = 1e-05
Identities = 28/71 (39%), Positives = 40/71 (56%)
Frame = +1
Query: 370 NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 549
N P DT+ +FVG L+ E ++ LR F +G+I ++ D T +SKGY FV+F
Sbjct: 15 NSPFGDTT-FTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTF- 72
Query: 550 KKADAEAAIQA 582
D EAA +A
Sbjct: 73 --RDPEAARRA 81
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 46.8 bits (106), Expect = 1e-05
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Frame = +1
Query: 361 SPGNQPKTDTSNH-HHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAF 537
SP +D N + ++V LS + L + FA G++++ +V DP T +S+G+ F
Sbjct: 61 SPTRSVSSDAENPGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGF 120
Query: 538 VSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRK 639
+S DA I++++ L R I + R+
Sbjct: 121 ISMKSVGDANRCIRSLDHSVLQGRVITVEKARRR 154
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/61 (36%), Positives = 36/61 (59%)
Frame = +1
Query: 397 HHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAI 576
H IFV L + + + L +AF +GEI +C+ V D + +SKGY F+ F ++ A A+
Sbjct: 127 HRKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNAL 186
Query: 577 Q 579
+
Sbjct: 187 K 187
Score = 33.5 bits (73), Expect = 0.12
Identities = 18/58 (31%), Positives = 31/58 (53%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ 579
I+V ++S +I+ L E F+ FGEI + D T + KG+A + A+ A++
Sbjct: 229 IYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALE 286
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 46.4 bits (105), Expect = 2e-05
Identities = 37/164 (22%), Positives = 73/164 (44%), Gaps = 1/164 (0%)
Frame = +1
Query: 130 HP-KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXX 306
HP +TL+V N++ +V + L LF Q GD++ + + + + +
Sbjct: 165 HPSRTLFVRNINSNVEDSELTALFEQYGDIR--TLYTTCKHRGFVMISYYDIRSARMAMR 222
Query: 307 XMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISN 486
+ + + +++ ++++ P + P N + V +L P I + L F GEI
Sbjct: 223 SLQNKPLRRRKLDIHFSI-PKDNPSEKDMNQGTLVVFNLDPSISNDDLHGIFGAHGEIKE 281
Query: 487 CRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIR 618
R +T + + FV F AEAA++A+N + + I+
Sbjct: 282 IR-----ETPHKRHHKFVEFYDVRGAEAALKALNRCEIAGKRIK 320
Score = 33.1 bits (72), Expect = 0.16
Identities = 24/77 (31%), Positives = 37/77 (48%)
Frame = +1
Query: 139 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNK 318
TL V NLDPS++ L +FG G++K +I P + F+EF +N+
Sbjct: 254 TLVVFNLDPSISNDDLHGIFGAHGEIK--EIRETPHKRHHKFVEFYDVRGAEAALKALNR 311
Query: 319 RVVLDKEMKVNWATSPG 369
+ K +KV + PG
Sbjct: 312 CEIAGKRIKVE-PSRPG 327
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 46.4 bits (105), Expect = 2e-05
Identities = 37/164 (22%), Positives = 73/164 (44%), Gaps = 1/164 (0%)
Frame = +1
Query: 130 HP-KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXX 306
HP +TL+V N++ +V + L LF Q GD++ + + + + +
Sbjct: 165 HPSRTLFVRNINSNVEDSELTALFEQYGDIR--TLYTTCKHRGFVMISYYDIRSARMAMR 222
Query: 307 XMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISN 486
+ + + +++ ++++ P + P N + V +L P I + L F GEI
Sbjct: 223 SLQNKPLRRRKLDIHFSI-PKDNPSEKDMNQGTLVVFNLDPSISNDDLHGIFGAHGEIKE 281
Query: 487 CRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIR 618
R +T + + FV F AEAA++A+N + + I+
Sbjct: 282 IR-----ETPHKRHHKFVEFYDVRGAEAALKALNRCEIAGKRIK 320
Score = 33.1 bits (72), Expect = 0.16
Identities = 24/77 (31%), Positives = 37/77 (48%)
Frame = +1
Query: 139 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNK 318
TL V NLDPS++ L +FG G++K +I P + F+EF +N+
Sbjct: 254 TLVVFNLDPSISNDDLHGIFGAHGEIK--EIRETPHKRHHKFVEFYDVRGAEAALKALNR 311
Query: 319 RVVLDKEMKVNWATSPG 369
+ K +KV + PG
Sbjct: 312 CEIAGKRIKVE-PSRPG 327
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/68 (33%), Positives = 38/68 (55%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
++V LS + L FA G++++C +V +P+T S+G+AFV+ DAE I+ +
Sbjct: 74 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYL 133
Query: 586 NGQWLGSR 609
N L R
Sbjct: 134 NQSVLEGR 141
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/68 (33%), Positives = 38/68 (55%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
++V LS + L FA G++++C +V +P+T S+G+AFV+ DAE I+ +
Sbjct: 73 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYL 132
Query: 586 NGQWLGSR 609
N L R
Sbjct: 133 NQSVLEGR 140
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/87 (24%), Positives = 47/87 (54%)
Frame = +1
Query: 355 ATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYA 534
+++PG + ++V +L + + + F+ FG+++ +++D T +S+G A
Sbjct: 42 SSAPGGGSGGLAPSKSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVA 101
Query: 535 FVSFVKKADAEAAIQAMNGQWLGSRSI 615
FV +V + DA A ++M+ + L R +
Sbjct: 102 FVLYVSREDAAKAARSMDAKILNGRKL 128
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 139 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE 240
TLYV NLD S+T + TLF G V ++++
Sbjct: 58 TLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKD 91
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 45.6 bits (103), Expect = 3e-05
Identities = 23/74 (31%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
++VG+L + LR+ F FG + ++ DP+T + KG+ F+ FV+ ++AA A+
Sbjct: 267 LYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIAL 326
Query: 586 NGQW-LGSRSIRTN 624
NG+ + R+I+ +
Sbjct: 327 NGKLEIAGRTIKVS 340
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 45.6 bits (103), Expect = 3e-05
Identities = 24/80 (30%), Positives = 43/80 (53%)
Frame = +1
Query: 379 KTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKA 558
+T+ ++F+ ++ E L AF FG + + ++ D T SK + FVS+ +A
Sbjct: 342 QTEGPEGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQA 401
Query: 559 DAEAAIQAMNGQWLGSRSIR 618
A+ AI MNG+ LG + ++
Sbjct: 402 AAQNAIDMMNGRHLGGKKLK 421
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/65 (32%), Positives = 38/65 (58%)
Frame = +1
Query: 400 HHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ 579
H +FVG L + ++ F+ +G I + +I+R Q SKG AF+ + K A +A++
Sbjct: 106 HKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQT-SKGCAFLKYETKEQAVSAME 164
Query: 580 AMNGQ 594
++NG+
Sbjct: 165 SINGK 169
Score = 33.1 bits (72), Expect = 0.16
Identities = 16/75 (21%), Positives = 33/75 (44%)
Frame = +1
Query: 370 NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 549
N+ K + +FVG + + + L F F + I++D T S+G F+
Sbjct: 8 NREKNEEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCP 67
Query: 550 KKADAEAAIQAMNGQ 594
+ +A+ + A + +
Sbjct: 68 SREEADKLVNACHNK 82
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 45.6 bits (103), Expect = 3e-05
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Frame = +1
Query: 361 SPGNQPKTDTSNH-HHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAF 537
SP +D N + ++V LS + L + FA G++++ +V DP T +S+G+ F
Sbjct: 31 SPTRSVSSDAENPGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGF 90
Query: 538 VSFVKKADAEAAIQAMNGQWLGSRSI 615
+S DA I++++ L R I
Sbjct: 91 ISMKSVGDANRCIRSLDHSVLQGRVI 116
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 45.2 bits (102), Expect = 4e-05
Identities = 25/94 (26%), Positives = 49/94 (52%)
Frame = +1
Query: 367 GNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 546
G D S+ + + V +++ + L FA +G++ + I RD +T S+G+AFV +
Sbjct: 5 GRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRY 64
Query: 547 VKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPA 648
K +A A++ ++G+ + R I ++ P A
Sbjct: 65 KYKDEAHKAVERLDGRVVDGREITVQFAKYGPNA 98
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 45.2 bits (102), Expect = 4e-05
Identities = 25/94 (26%), Positives = 49/94 (52%)
Frame = +1
Query: 367 GNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 546
G D S+ + + V +++ + L FA +G++ + I RD +T S+G+AFV +
Sbjct: 5 GRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRY 64
Query: 547 VKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPA 648
K +A A++ ++G+ + R I ++ P A
Sbjct: 65 KYKDEAHKAVERLDGRVVDGREITVQFAKYGPNA 98
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 45.2 bits (102), Expect = 4e-05
Identities = 25/80 (31%), Positives = 40/80 (50%)
Frame = +1
Query: 403 HIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQA 582
+IFV + L+ AF +GEI C +V D T + KGY FV F + A A++
Sbjct: 409 NIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKR 468
Query: 583 MNGQWLGSRSIRTNWSTRKP 642
+ + +R + N ++ KP
Sbjct: 469 PEKR-MYNRIVVCNLASEKP 487
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 45.2 bits (102), Expect = 4e-05
Identities = 22/80 (27%), Positives = 43/80 (53%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
++V ++ + L + F PFG + + + R+PQT +S+G +V+ A+ AI ++
Sbjct: 110 LYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASL 169
Query: 586 NGQWLGSRSIRTNWSTRKPP 645
+G +G R +R +S P
Sbjct: 170 DGTEVGGREMRVRYSVDMNP 189
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 44.8 bits (101), Expect = 5e-05
Identities = 20/64 (31%), Positives = 37/64 (57%)
Frame = +1
Query: 400 HHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ 579
+ FVG L+ L+ F+ FG++ + +I+ D ++ +S+G+ FV+F + AI+
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 580 AMNG 591
MNG
Sbjct: 66 EMNG 69
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 44.4 bits (100), Expect = 7e-05
Identities = 19/70 (27%), Positives = 45/70 (64%)
Frame = +1
Query: 430 EIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSR 609
+I+++ L++ + FG++ +C +++D T +S+G+ +V+F DA+ A++ + +LG+R
Sbjct: 13 DIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKGEH--FLGNR 70
Query: 610 SIRTNWSTRK 639
+ +T K
Sbjct: 71 ILEVKVATPK 80
Score = 44.4 bits (100), Expect = 7e-05
Identities = 25/73 (34%), Positives = 36/73 (49%)
Frame = +1
Query: 349 NWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKG 528
N AT G T + IFVG L E + LR+ F FG I + I +DP+ +G
Sbjct: 223 NPATFYGRGEPTTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRG 282
Query: 529 YAFVSFVKKADAE 567
+ FV+F + A+
Sbjct: 283 FGFVTFAENGVAD 295
Score = 30.7 bits (66), Expect = 0.88
Identities = 21/100 (21%), Positives = 45/100 (45%)
Frame = +1
Query: 340 MKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLK 519
++V AT P + + IFV + + + R F +GEI++ + +D + +
Sbjct: 72 LEVKVAT-PKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQ 130
Query: 520 SKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRK 639
+G F++F E ++ + LG ++ + +T K
Sbjct: 131 HRGIGFITFSSADSVEDLMEDTHD--LGGTTVAVDRATPK 168
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 44.4 bits (100), Expect = 7e-05
Identities = 25/75 (33%), Positives = 39/75 (52%)
Frame = +1
Query: 391 SNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEA 570
S+H + V ++ + LRE F FG + + I RD + + +G+AFV FV DA
Sbjct: 44 SSHGSLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGE 103
Query: 571 AIQAMNGQWLGSRSI 615
A ++MN + R I
Sbjct: 104 AQRSMNRRSFAGREI 118
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 44.4 bits (100), Expect = 7e-05
Identities = 20/70 (28%), Positives = 38/70 (54%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
+FV +S L +AF+ +G++ ++ D + KG+A+V+F K +AE A+ +
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLEL 82
Query: 586 NGQWLGSRSI 615
N Q + R +
Sbjct: 83 NAQLVDGRVV 92
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 44.0 bits (99), Expect = 9e-05
Identities = 25/92 (27%), Positives = 43/92 (46%)
Frame = +1
Query: 364 PGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVS 543
P K + +FVG LS + LRE + +G I N R+VR T S+GY FV
Sbjct: 52 PSGDSKAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVE 111
Query: 544 FVKKADAEAAIQAMNGQWLGSRSIRTNWSTRK 639
+ + + A + + + R I +++ ++
Sbjct: 112 YETEKEMLRAYEDAHHSLIDGREIIVDYNRQQ 143
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 44.0 bits (99), Expect = 9e-05
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Frame = +1
Query: 361 SPGNQPKTDTSNHHHI-FVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAF 537
S G+ P+ + ++ FV L+P E L F+ FG + + ++RD +T S YAF
Sbjct: 229 SIGDIPEAEVKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAF 288
Query: 538 VSFVKKADAEAAIQAMNGQWLGSRSIRTNWS 630
+ F K E A M+ + R I ++S
Sbjct: 289 IEFENKESCEQAYFKMDNALIDDRRIHVDFS 319
Score = 31.1 bits (67), Expect = 0.66
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Frame = +1
Query: 142 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE--PGND-PYAFLEFTCHXXXXXXXXXM 312
L+V L+P + L T+F + G V +IR+ G+ YAF+EF M
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKM 304
Query: 313 NKRVVLDKEMKVNWATS 363
+ ++ D+ + V+++ S
Sbjct: 305 DNALIDDRRIHVDFSQS 321
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/63 (33%), Positives = 36/63 (57%)
Frame = +1
Query: 391 SNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEA 570
S+ +FVG +S E + + LRE F +GE+S ++RD T + +G+ FV F + +
Sbjct: 3 SDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDR 62
Query: 571 AIQ 579
+Q
Sbjct: 63 VLQ 65
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/62 (33%), Positives = 36/62 (58%)
Frame = +1
Query: 391 SNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEA 570
S++ +F+G +S + L+E F+ FGE+ I++D T +++G+ FV F A AE
Sbjct: 3 SDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEI 62
Query: 571 AI 576
I
Sbjct: 63 VI 64
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/62 (33%), Positives = 36/62 (58%)
Frame = +1
Query: 391 SNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEA 570
S++ +F+G +S + L+E F+ FGE+ I++D T +++G+ FV F A AE
Sbjct: 3 SDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEI 62
Query: 571 AI 576
I
Sbjct: 63 VI 64
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 43.6 bits (98), Expect = 1e-04
Identities = 36/170 (21%), Positives = 71/170 (41%), Gaps = 3/170 (1%)
Frame = +1
Query: 130 HP-KTLYVGNLDPSVTEVFLCTLFGQIGDVKGC-KIIREPGNDPYAFLEF-TCHXXXXXX 300
HP +TL+V N++ SV + L LF G+++ + G ++ + H
Sbjct: 182 HPSRTLFVRNINSSVEDSELSALFEPFGEIRSLYTACKSRGFVMISYYDIRAAHAAMRAL 241
Query: 301 XXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEI 480
+ ++ LD + P P N + + ++ + + L + F +GEI
Sbjct: 242 QNTLLRKRTLDIHFSI-----PKENPSEKDMNQGTLVIFNVDTTVSNDELLQLFGAYGEI 296
Query: 481 SNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWS 630
R +T + + F+ + DAE A++A+N +G + I+ S
Sbjct: 297 REIR-----ETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLELS 341
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 43.6 bits (98), Expect = 1e-04
Identities = 36/170 (21%), Positives = 71/170 (41%), Gaps = 3/170 (1%)
Frame = +1
Query: 130 HP-KTLYVGNLDPSVTEVFLCTLFGQIGDVKGC-KIIREPGNDPYAFLEF-TCHXXXXXX 300
HP +TL+V N++ SV + L LF G+++ + G ++ + H
Sbjct: 195 HPSRTLFVRNINSSVEDSELSALFEPFGEIRSLYTACKSRGFVMISYYDIRAAHAAMRAL 254
Query: 301 XXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEI 480
+ ++ LD + P P N + + ++ + + L + F +GEI
Sbjct: 255 QNTLLRKRTLDIHFSI-----PKENPSEKDMNQGTLVIFNVDTTVSNDELLQLFGAYGEI 309
Query: 481 SNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWS 630
R +T + + F+ + DAE A++A+N +G + I+ S
Sbjct: 310 REIR-----ETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLELS 354
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +1
Query: 406 IFVGDLSPEIETNI-LREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQA 582
IFVG L P T + +RE FG + +V+D +T SKGYAF + + + A A
Sbjct: 377 IFVGGL-PYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAA 435
Query: 583 MNGQWLGSRSI 615
+NG +G +++
Sbjct: 436 LNGIKMGDKTL 446
Score = 31.9 bits (69), Expect = 0.38
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Frame = +1
Query: 133 PKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGNDP-YAFLEFTCHXXXXXXX 303
P ++VG L TEV + L G ++G ++ RE GN YAF +
Sbjct: 374 PDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIAC 433
Query: 304 XXMNKRVVLDKEMKVNWATSPGNQPKTD 387
+N + DK + V A QPK +
Sbjct: 434 AALNGIKMGDKTLTVRRAIQGAIQPKPE 461
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/70 (32%), Positives = 37/70 (52%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
IFVG L + +RE FG + +V+D +T SKGYAF + + + A A+
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 586 NGQWLGSRSI 615
NG +G +++
Sbjct: 421 NGIKMGDKTL 430
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/70 (32%), Positives = 37/70 (52%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
IFVG L + +RE FG + +V+D +T SKGYAF + + + A A+
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 586 NGQWLGSRSI 615
NG +G +++
Sbjct: 421 NGIKMGDKTL 430
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/70 (32%), Positives = 37/70 (52%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
IFVG L + +RE FG + +V+D +T SKGYAF + + + A A+
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 586 NGQWLGSRSI 615
NG +G +++
Sbjct: 421 NGIKMGDKTL 430
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/61 (37%), Positives = 31/61 (50%)
Frame = +1
Query: 397 HHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAI 576
H IFV L E L F +GEI C +V D T K+KG+ FV F + A+ A+
Sbjct: 103 HRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEAL 162
Query: 577 Q 579
+
Sbjct: 163 K 163
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/61 (37%), Positives = 31/61 (50%)
Frame = +1
Query: 397 HHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAI 576
H IFV L E L F +GEI C +V D T K+KG+ FV F + A+ A+
Sbjct: 103 HRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEAL 162
Query: 577 Q 579
+
Sbjct: 163 K 163
>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
RNA-binding protein GB:AAA86641 GI:1174153 from
[Arabidopsis thaliana]
Length = 314
Score = 43.2 bits (97), Expect = 2e-04
Identities = 50/181 (27%), Positives = 85/181 (46%), Gaps = 13/181 (7%)
Frame = +1
Query: 121 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND-PYAFLEF-------T 276
++S +T+YV ++D SVTE L LF G V C+I +P + +AF+EF +
Sbjct: 123 EDSIRRTVYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVLRFAFVEFSDDQGARS 182
Query: 277 CHXXXXXXXXXMNKRVVLDKE--MKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNIL 450
RV+ K + VN P ++ + + + I+ ++ + +
Sbjct: 183 ALSLGGTMIGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS-RTIYCTNVDKNATEDDV 241
Query: 451 REAF-APFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN--GQWLGSRSIRT 621
F + GE++ R++ D + S AFV F A AE+A+ A+N G LGS+ IR
Sbjct: 242 NTFFQSACGEVTRLRLLGD--QVHSTRIAFVEF---AMAESAVAALNCSGIVLGSQPIRV 296
Query: 622 N 624
+
Sbjct: 297 S 297
Score = 38.7 bits (86), Expect = 0.003
Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 7/109 (6%)
Frame = +1
Query: 313 NKRVVLDKEMKVNWATS-----PGNQPKT--DTSNHHHIFVGDLSPEIETNILREAFAPF 471
NK+V +++ + N+ PG K + S ++V D+ + L F+
Sbjct: 92 NKKVAINRRRRNNYNQGRRVRLPGRASKAQREDSIRRTVYVSDIDQSVTEEGLAGLFSSC 151
Query: 472 GEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIR 618
G++ +CRI DP ++ +AFV F A +A+ ++ G +G +R
Sbjct: 152 GQVVDCRICGDPNSVLR--FAFVEFSDDQGARSAL-SLGGTMIGYYPVR 197
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 42.3 bits (95), Expect = 3e-04
Identities = 32/161 (19%), Positives = 66/161 (40%)
Frame = +1
Query: 136 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMN 315
+TL VGN+ +V + L LF Q GD++ + N + + + +
Sbjct: 217 RTLLVGNISSNVEDYELKVLFEQFGDIQALHTACK--NRGFIMVSYCDIRAAQNAARALQ 274
Query: 316 KRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRI 495
+++ ++ + ++ S N + DTS + V +L I L +GE+ R
Sbjct: 275 NKLLRGTKLDIRYSISKENPSQKDTSK-GALLVNNLDSSISNQELNRLVKSYGEVKEIR- 332
Query: 496 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIR 618
+T+ ++ F A AA+ +NG + + ++
Sbjct: 333 ----RTMHDNSQIYIEFFDVRAAAAALGGLNGLEVAGKKLQ 369
>At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing
protein KIAA0332 gene, Homo sapiens, EMBL:HSAB2330
Length = 947
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Frame = +1
Query: 403 HIFVGDLSPEIETNILREAFAPFGEISNCRIV---RDPQTLKSKGYAFVSFVKKADAEAA 573
+++V +LS +++ N L F FG I++ +I+ + + + + FV+F+ +AD EAA
Sbjct: 188 NLYVVNLSSKVDENFLLRTFGRFGPIASVKIMWPRTEEEKRRERHCGFVAFMNRADGEAA 247
Query: 574 IQAMNGQWLGSRSIRTNW 627
+ M G + ++ W
Sbjct: 248 KEKMQGIIVYEYELKIGW 265
Score = 33.9 bits (74), Expect = 0.094
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Frame = +1
Query: 121 DESHPKT--LYVGNLDPSVTEVFLCTLFGQIGDVKGCKII-----REPGNDPY-AFLEFT 276
D+ P+T LYV NL V E FL FG+ G + KI+ E + + F+ F
Sbjct: 180 DDGDPQTTNLYVVNLSSKVDENFLLRTFGRFGPIASVKIMWPRTEEEKRRERHCGFVAFM 239
Query: 277 CHXXXXXXXXXMNKRVVLDKEMKVNW 354
M +V + E+K+ W
Sbjct: 240 NRADGEAAKEKMQGIIVYEYELKIGW 265
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/59 (38%), Positives = 34/59 (57%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQA 582
+FVG L+ E +++ F FGEI ++ D + +SKGY FV+F +AEAA A
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTF---REAEAARSA 70
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/59 (38%), Positives = 34/59 (57%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQA 582
+FVG L+ E +++ F FGEI ++ D + +SKGY FV+F +AEAA A
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTF---REAEAARSA 70
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/59 (38%), Positives = 34/59 (57%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQA 582
+FVG L+ E +++ F FGEI ++ D + +SKGY FV+F +AEAA A
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTF---REAEAARSA 70
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/72 (27%), Positives = 38/72 (52%)
Frame = +1
Query: 361 SPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFV 540
+P Q S+ +F+G +S + + L+E F +G++ I+RD T +++G+ F+
Sbjct: 2 NPEEQKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFI 61
Query: 541 SFVKKADAEAAI 576
F + AE I
Sbjct: 62 VFADPSVAERVI 73
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/65 (32%), Positives = 38/65 (58%)
Frame = +1
Query: 400 HHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ 579
H +FVG L + ++ F+ +G I + +I+R Q SKG AF+ + K A +A++
Sbjct: 106 HKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQT-SKGCAFLKYETKEQAVSAME 164
Query: 580 AMNGQ 594
++NG+
Sbjct: 165 SINGK 169
Score = 33.1 bits (72), Expect = 0.16
Identities = 16/75 (21%), Positives = 33/75 (44%)
Frame = +1
Query: 370 NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 549
N+ K + +FVG + + + L F F + I++D T S+G F+
Sbjct: 8 NREKNEEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCP 67
Query: 550 KKADAEAAIQAMNGQ 594
+ +A+ + A + +
Sbjct: 68 SREEADKLVNACHNK 82
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 41.9 bits (94), Expect = 4e-04
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
++VG+L + + LR+ F FG + ++ RD +T KG+ FV F + DA A+ +
Sbjct: 287 LYVGNLHINMSEDDLRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFARLEDARNALN-L 344
Query: 586 NGQW-LGSRSIRTN 624
NGQ + R+I+ +
Sbjct: 345 NGQLEIAGRAIKVS 358
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +1
Query: 373 QPKTDTSNHHH-IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 549
+P+ D +F ++ + E F+ G++ + RI+ D + +S+G +V F
Sbjct: 172 EPEADPERDQRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFY 231
Query: 550 KKADAEAAIQAMNGQ 594
AI A++GQ
Sbjct: 232 DTMSVPMAI-ALSGQ 245
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 41.9 bits (94), Expect = 4e-04
Identities = 24/59 (40%), Positives = 33/59 (55%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQA 582
+FVG L+ E LR F FG+I ++ D + +SKGY FV+F D EAA +A
Sbjct: 9 VFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTF---CDPEAAQKA 64
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 41.9 bits (94), Expect = 4e-04
Identities = 24/59 (40%), Positives = 33/59 (55%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQA 582
+FVG L+ E LR F FG+I ++ D + +SKGY FV+F D EAA +A
Sbjct: 9 VFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTF---CDPEAAQKA 64
>At4g10610.1 68417.m01735 RNA-binding protein, putative
Length = 336
Score = 41.5 bits (93), Expect = 5e-04
Identities = 51/175 (29%), Positives = 78/175 (44%), Gaps = 12/175 (6%)
Frame = +1
Query: 136 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND-PYAFLEFTCHXXXXXXXXXM 312
+T+YV ++D VTE L LF G V C+I +P + +AF+EFT
Sbjct: 150 RTVYVSDIDQQVTEEQLAGLFIGFGQVVDCRICGDPNSVLRFAFIEFTDEVGARTALNLS 209
Query: 313 NKRVVL--DKEMKVNWATSPGNQ---PKTDTSNH---HHIFVGDLSPEI-ETNILREAFA 465
+ K M A +P N P+T+ I+ ++ ++ +T+I +
Sbjct: 210 GTMLGFYPVKVMPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKLTQTDIKLFFES 269
Query: 466 PFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN--GQWLGSRSIRTN 624
GE+ R++ D G FV FV AE+AI A+N G LGS IR +
Sbjct: 270 VCGEVYRLRLLGDYHHPTRIG--FVEFVM---AESAIAALNCSGVLLGSLPIRVS 319
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 41.5 bits (93), Expect = 5e-04
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +1
Query: 403 HIFVGDLSPEIETNILREAF-APFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ 579
++FV +L+ E L+E F A G + + ++ +S GY FVSF K AEAA+
Sbjct: 190 NLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALI 249
Query: 580 AMNGQWLGSRSIR 618
G+ R IR
Sbjct: 250 EFQGKDFLGRPIR 262
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/75 (28%), Positives = 37/75 (49%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
+ V LS + L+E F FGE+ + I D +G+ +V F +ADAE A M
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 586 NGQWLGSRSIRTNWS 630
+G + + ++ ++
Sbjct: 160 DGAQIDGKVVKATFT 174
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/75 (28%), Positives = 37/75 (49%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
+ V LS + L+E F FGE+ + I D +G+ +V F +ADAE A M
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 586 NGQWLGSRSIRTNWS 630
+G + + ++ ++
Sbjct: 160 DGAQIDGKVVKATFT 174
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 41.1 bits (92), Expect = 6e-04
Identities = 22/59 (37%), Positives = 34/59 (57%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQA 582
+FVG L+ + + + F +G+I I+ D T +SKGY FV+F DA+AA +A
Sbjct: 19 VFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTF---KDAKAATRA 74
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 41.1 bits (92), Expect = 6e-04
Identities = 37/158 (23%), Positives = 69/158 (43%), Gaps = 5/158 (3%)
Frame = +1
Query: 130 HPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP---YAFLEFTCHXXXXXX 300
H +Y+G + TE L G IG+V +I+RE + YAF+ F
Sbjct: 90 HGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEA 149
Query: 301 XXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPE-IETNILREAFAPFGE 477
+N K +K + T H +F+G++ +E++I + A
Sbjct: 150 IDTLNNTDFRGKRIKC-----------STTQAKHRLFLGNVPRNWMESDIKKAANRIGPG 198
Query: 478 ISNCRIVRDPQTL-KSKGYAFVSFVKKADAEAAIQAMN 588
+ + ++PQ + +++G+AF+ + A AE + Q M+
Sbjct: 199 VQIVELPKEPQNMGRNRGFAFIEYYNHACAEYSKQKMS 236
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/78 (26%), Positives = 38/78 (48%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
+++G + + L+ GE++ RI+R+ + KGYAFV+F K A AI +
Sbjct: 94 VYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTL 153
Query: 586 NGQWLGSRSIRTNWSTRK 639
N + I+ + + K
Sbjct: 154 NNTDFRGKRIKCSTTQAK 171
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 40.7 bits (91), Expect = 8e-04
Identities = 43/177 (24%), Positives = 80/177 (45%), Gaps = 12/177 (6%)
Frame = +1
Query: 136 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR-EPGN-DPYAFLEFTCHXXXXXXXXX 309
KTL+ GNL + + F + G+V ++ + G+ Y +EF
Sbjct: 384 KTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGSFKGYGHIEFAS-PEEAQKALE 442
Query: 310 MNKRVVLDKEMKVNWATSPG----NQP--KTDTSNHHHIFVGDLSPEI-ETNI---LREA 459
MN +++L ++++++ A G + P K + S I+V S + E I LR
Sbjct: 443 MNGKLLLGRDVRLDLANERGTPRNSNPGRKGEGSQSRTIYVRGFSSSLGEDEIKKELRSH 502
Query: 460 FAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWS 630
F+ GE++ + D +T S+G+A++ D A+Q ++G +G +I S
Sbjct: 503 FSKCGEVTRVHVPTDRETGASRGFAYIDLTSGFD--EALQ-LSGSEIGGGNIHVEES 556
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 40.7 bits (91), Expect = 8e-04
Identities = 19/58 (32%), Positives = 33/58 (56%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ 579
+F+ L+ + T LR F+ +G++ ++ D T KSKGY FV+F+ A A++
Sbjct: 77 LFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALK 134
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 40.7 bits (91), Expect = 8e-04
Identities = 19/58 (32%), Positives = 33/58 (56%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ 579
+F+ L+ + T LR F+ +G++ ++ D T KSKGY FV+F+ A A++
Sbjct: 77 LFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALK 134
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 40.7 bits (91), Expect = 8e-04
Identities = 21/83 (25%), Positives = 41/83 (49%)
Frame = +1
Query: 382 TDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAD 561
+ +S +FVG++ + LRE G + + R+V D +T K KGY F + +
Sbjct: 3 SSSSQRRCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEET 62
Query: 562 AEAAIQAMNGQWLGSRSIRTNWS 630
A +A + + + R +R +++
Sbjct: 63 ALSARRNLQSYEINGRQLRVDFA 85
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +1
Query: 382 TDTSNHH----HIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 549
+ T+NH IFVG+L+ + LR F FG++ + +V + +SKGY F++F
Sbjct: 2 SQTNNHDTRVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFR 61
Query: 550 KKADAEAAIQ 579
A+Q
Sbjct: 62 DYVSTVRALQ 71
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/57 (33%), Positives = 32/57 (56%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAI 576
+F+G +S E + LR+ F FGE+ I++D T +++G+ FV F AE +
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVV 64
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/57 (33%), Positives = 32/57 (56%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAI 576
+F+G +S E + LR+ F FGE+ I++D T +++G+ FV F AE +
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVV 64
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 39.9 bits (89), Expect = 0.001
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
+ V +L + LR++F FG + + + RD T +G+ FV F+ ADA A M
Sbjct: 38 LLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHM 97
Query: 586 NGQWLGSRSIRTNWS--TRKPP 645
+G L R + ++ RK P
Sbjct: 98 DGYLLLGRELTVVFAEENRKKP 119
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 39.9 bits (89), Expect = 0.001
Identities = 42/193 (21%), Positives = 80/193 (41%), Gaps = 7/193 (3%)
Frame = +1
Query: 85 KVIDRLR*ANMGDESHP----KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPG 246
K++ ++ DE+ P + + V NL P + F + V +++ E
Sbjct: 137 KLLRQVHTVQSKDETPPDFVDEVVIVSNLSPLTKIAHIKGFFNGVAQVVSVRLVVNHEGK 196
Query: 247 NDPYAFLEFTCHXXXXXXXXXMNKRVVLD-KEMKVNWATSPGNQPKTDTSNHHHIFVGDL 423
+ Y F+EF N + + K + + SPG + + +FV +L
Sbjct: 197 HVGYGFVEFASAYGANKALEEKNGEYLHNHKILLMKGHESPGFAEEAAITKT--LFVANL 254
Query: 424 SPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLG 603
I+ + + F GE+ + R++ + Q K G+ FV F +AE A+ NG++L
Sbjct: 255 RDSIQISDIINFFKDVGEVVHVRLIVNSQG-KHAGWGFVEFASANEAEKAL-VKNGEYLH 312
Query: 604 SRSIRTNWSTRKP 642
+ I + + P
Sbjct: 313 NYKISLDGAKTAP 325
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/74 (29%), Positives = 37/74 (50%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
+++G++S L E F+ GEI + D T G+ FV F + D E A++ +
Sbjct: 36 VYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKYI 95
Query: 586 NGQWLGSRSIRTNW 627
+G L R IR ++
Sbjct: 96 SGTILDDRPIRVDF 109
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/70 (28%), Positives = 39/70 (55%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
+FV +LSP+ + + + + F GE+ + R++ + + K GY FV F + + A++
Sbjct: 246 LFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHEG-KHVGYGFVEFASADETKKALENK 304
Query: 586 NGQWLGSRSI 615
NG++L I
Sbjct: 305 NGEYLHDHKI 314
Score = 38.7 bits (86), Expect = 0.003
Identities = 22/70 (31%), Positives = 38/70 (54%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
+FV +LSP + + + + F E+ R++ + + + G FV F +A+ A+Q M
Sbjct: 491 LFVANLSPRTKISHIIKFFKDVAEVVRVRLIVNHRG-EHVGCGFVEFASVNEAQKALQKM 549
Query: 586 NGQWLGSRSI 615
NG+ L SR I
Sbjct: 550 NGENLRSREI 559
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 39.5 bits (88), Expect = 0.002
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Frame = +1
Query: 310 MNKRVVLDKEMKVNWATSPGNQPKTDT---SNHHHIFVGDLSPEIETNILREAFAPFGEI 480
+ K+ +K +K + GN D+ + HI V DL P ++ F FG I
Sbjct: 517 VEKKYAYNKNIKADAGADTGNGNSQDSQAITEDAHIRVKDLPPNATVALVESVFKQFGPI 576
Query: 481 SNCRI-VRDPQTLKSKGYAFVSFVKKADAEAAIQA 582
RI V +P + YAFV F + A+ AIQA
Sbjct: 577 KKGRIRVINPAN-SNYWYAFVEFEEADAAKRAIQA 610
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 39.5 bits (88), Expect = 0.002
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Frame = +1
Query: 367 GNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 546
G D + ++VG L+ I +R+ F GEI + RI+ D K AFV++
Sbjct: 217 GTLESPDDESIKTLYVGGLNSRILEQDIRDQFYAHGEIESIRILAD------KACAFVTY 270
Query: 547 VKKADAEAAIQAMNGQW-LGSRSIRTNWSTRKP 642
+ AE A Q ++ + + + ++ W KP
Sbjct: 271 TSREGAEKAAQELSNRLVINGQRLKLTWGRPKP 303
Score = 32.7 bits (71), Expect = 0.22
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Frame = +1
Query: 121 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXX 300
D+ KTLYVG L+ + E + F G+++ +I+ + AF+ +T
Sbjct: 223 DDESIKTLYVGGLNSRILEQDIRDQFYAHGEIESIRILADKA---CAFVTYTSREGAEKA 279
Query: 301 XXXMNKRVVLD-KEMKVNWATSPGNQ 375
++ R+V++ + +K+ W +Q
Sbjct: 280 AQELSNRLVINGQRLKLTWGRPKPDQ 305
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/75 (30%), Positives = 39/75 (52%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
+ V +++ E LR+ F+PFG+I + R+ + + GYAFV FV K +A A +A+
Sbjct: 671 LHVKNIAFEATKRELRQLFSPFGQIKSMRLPKK-NIGQYAGYAFVEFVTKQEALNAKKAL 729
Query: 586 NGQWLGSRSIRTNWS 630
R + W+
Sbjct: 730 ASTHFYGRHLVLEWA 744
Score = 35.9 bits (79), Expect = 0.023
Identities = 19/68 (27%), Positives = 36/68 (52%)
Frame = +1
Query: 385 DTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADA 564
D + +FV +L L E F+ FG+IS +V D +T +S+G A++ ++ A
Sbjct: 256 DVLDTGRLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECA 315
Query: 565 EAAIQAMN 588
A++ ++
Sbjct: 316 ARAMEELD 323
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 39.1 bits (87), Expect = 0.003
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
+ V +L + LR F FG + + + RD T +G+ F+ F+ ADA A M
Sbjct: 39 LLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQM 98
Query: 586 NGQWLGSRSIRTNWS--TRKPP 645
+G L R + ++ RK P
Sbjct: 99 DGYLLLGRELTVVFAEENRKKP 120
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 39.1 bits (87), Expect = 0.003
Identities = 26/82 (31%), Positives = 42/82 (51%)
Frame = +1
Query: 373 QPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVK 552
+P D S+ IFV ++ + L F FGE+ IV DP T + G A++ F +
Sbjct: 508 RPLEDASSRT-IFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTR 566
Query: 553 KADAEAAIQAMNGQWLGSRSIR 618
K AE A+ +++G SR ++
Sbjct: 567 KEAAENAL-SLDGTSFMSRILK 587
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/57 (28%), Positives = 33/57 (57%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAI 576
+F+G +S + + LR+ F+ +G++ I+RD T +++G+ F+ F +E I
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI 64
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/57 (28%), Positives = 33/57 (57%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAI 576
+F+G +S + + LR+ F+ +G++ I+RD T +++G+ F+ F +E I
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI 64
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/57 (28%), Positives = 33/57 (57%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAI 576
+F+G +S + + LR+ F+ +G++ I+RD T +++G+ F+ F +E I
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI 64
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 38.3 bits (85), Expect = 0.004
Identities = 24/59 (40%), Positives = 33/59 (55%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQA 582
I+VG L L F FGEI + +V D +T +S+GY FV+F DAE+A +A
Sbjct: 15 IYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTF---KDAESATRA 70
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 38.3 bits (85), Expect = 0.004
Identities = 15/62 (24%), Positives = 33/62 (53%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
+++G++ + +L + G + + I RD +T K KG+AF + + A+ A++
Sbjct: 9 VYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIADYAVKLF 68
Query: 586 NG 591
+G
Sbjct: 69 SG 70
>At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-binding
protein RBP37, Arabidopsis thaliana, PIR:T04196
Length = 353
Score = 38.3 bits (85), Expect = 0.004
Identities = 19/66 (28%), Positives = 36/66 (54%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
++V D+ ++ L F G++ +CR+ DP ++ +AF+ F + A AA+ +M
Sbjct: 171 VYVSDIDQQVTEENLAGVFINCGQVVDCRVCGDPNSVLR--FAFIEFTNEEGARAAL-SM 227
Query: 586 NGQWLG 603
+G LG
Sbjct: 228 SGTVLG 233
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +1
Query: 121 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND-PYAFLEFT 276
D+ +T+YV ++D VTE L +F G V C++ +P + +AF+EFT
Sbjct: 164 DDVIRRTVYVSDIDQQVTEENLAGVFINCGQVVDCRVCGDPNSVLRFAFIEFT 216
>At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing
protein similar to Tat-SF1 - Homo sapiens, GI:1667611;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 519
Score = 37.9 bits (84), Expect = 0.006
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +1
Query: 418 DLSPEIETNILREAF--APFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNG 591
DL E+E ++ E+ PF + C PQ G V F + DA+ I+AMNG
Sbjct: 424 DLVAELEEDVKEESLKHGPFDSVKVCE--HHPQ-----GVVLVRFKDRRDAQKCIEAMNG 476
Query: 592 QWLGSRSIRTN 624
+W R I +
Sbjct: 477 RWYAKRQIHAS 487
>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
gb:D86122
Length = 785
Score = 37.9 bits (84), Expect = 0.006
Identities = 23/89 (25%), Positives = 39/89 (43%)
Frame = +1
Query: 364 PGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVS 543
P + P N + V +L+P + L F +GEI R +T + + FV
Sbjct: 210 PKDNPSEKDVNQGTLVVFNLAPSVSNRDLENIFGVYGEIKEIR-----ETPNKRHHKFVE 264
Query: 544 FVKKADAEAAIQAMNGQWLGSRSIRTNWS 630
F A+AA++A+N + + I+ S
Sbjct: 265 FFDVRSADAALKALNRTEIAGKRIKLEHS 293
Score = 31.5 bits (68), Expect = 0.50
Identities = 22/77 (28%), Positives = 35/77 (45%)
Frame = +1
Query: 139 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNK 318
TL V NL PSV+ L +FG G++K +I P + F+EF +N+
Sbjct: 223 TLVVFNLAPSVSNRDLENIFGVYGEIK--EIRETPNKRHHKFVEFFDVRSADAALKALNR 280
Query: 319 RVVLDKEMKVNWATSPG 369
+ K +K+ + G
Sbjct: 281 TEIAGKRIKLEHSRPGG 297
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 37.5 bits (83), Expect = 0.008
Identities = 19/73 (26%), Positives = 34/73 (46%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
+++G + + F+ FG + R+ R+ +T KSK + F+ F AE A AM
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAM 121
Query: 586 NGQWLGSRSIRTN 624
N L ++ +
Sbjct: 122 NDYLLMEHMLKVH 134
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 36.3 bits (80), Expect = 0.018
Identities = 21/44 (47%), Positives = 25/44 (56%)
Frame = +1
Query: 142 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 273
+YVGNLDP VTE L F G V+ + R P YAFL+F
Sbjct: 4 VYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPG--YAFLDF 45
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 36.3 bits (80), Expect = 0.018
Identities = 20/44 (45%), Positives = 25/44 (56%)
Frame = +1
Query: 142 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 273
+YVGNLDP VTE L F G ++ + R P YAFL+F
Sbjct: 4 VYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPG--YAFLDF 45
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 36.3 bits (80), Expect = 0.018
Identities = 21/44 (47%), Positives = 25/44 (56%)
Frame = +1
Query: 142 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 273
+YVGNLDP VTE L F G ++ + R P YAFLEF
Sbjct: 4 VYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPG--YAFLEF 45
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 36.3 bits (80), Expect = 0.018
Identities = 21/44 (47%), Positives = 25/44 (56%)
Frame = +1
Query: 142 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 273
+YVGNLDP VTE L F G ++ + R P YAFLEF
Sbjct: 4 VYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPG--YAFLEF 45
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 35.9 bits (79), Expect = 0.023
Identities = 24/76 (31%), Positives = 39/76 (51%)
Frame = +1
Query: 403 HIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQA 582
H++VG+L I L + F FGE+ + + P + YAFV+F DA AAI++
Sbjct: 24 HLWVGNLPHGILERELADRFLRFGELES--LAFQP----GRSYAFVNFNHDEDAFAAIES 77
Query: 583 MNGQWLGSRSIRTNWS 630
+ G L +R ++
Sbjct: 78 LQGFPLSGNPLRIEFA 93
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 35.9 bits (79), Expect = 0.023
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +1
Query: 388 TSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAE 567
TS IFVG LS + F FG ++ ++ D T + +G+ FV++ + E
Sbjct: 116 TSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVE 175
Query: 568 AAIQA 582
+Q+
Sbjct: 176 VVMQS 180
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 35.9 bits (79), Expect = 0.023
Identities = 24/65 (36%), Positives = 33/65 (50%)
Frame = +1
Query: 409 FVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 588
F LS + N LRE F+ GEI N + D T SKG A++ F E A++ +N
Sbjct: 408 FDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEF--SEGKEKALE-LN 464
Query: 589 GQWLG 603
G +G
Sbjct: 465 GSDMG 469
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 35.5 bits (78), Expect = 0.031
Identities = 22/61 (36%), Positives = 30/61 (49%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
I+V L T L F FGEI ++V D T +SKG+ FV+F + A A +
Sbjct: 11 IYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACENP 70
Query: 586 N 588
N
Sbjct: 71 N 71
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 35.1 bits (77), Expect = 0.041
Identities = 16/68 (23%), Positives = 38/68 (55%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
+++ +L ++ +L F+ FG++ + +D + +S+G+AF+ F A A+ M
Sbjct: 19 LYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRG-ESRGFAFIEFESADSAGRAMLHM 77
Query: 586 NGQWLGSR 609
+G+ +G +
Sbjct: 78 DGRLIGQK 85
Score = 31.1 bits (67), Expect = 0.66
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Frame = +1
Query: 112 NMGDESHPK---TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFT 276
N G S P+ +LY+ NLD V+E L +F G V + ++ + +AF+EF
Sbjct: 6 NHGSSSCPRKFTSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFE 65
Query: 277 CHXXXXXXXXXMNKRVVLDK 336
M+ R++ K
Sbjct: 66 SADSAGRAMLHMDGRLIGQK 85
>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
protein / RNA recognition motif (RRM)-containing protein
similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
{Escherichia coli O157:H7}; contains Pfam profiles
PF01743: polyA polymerase family protein, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 881
Score = 35.1 bits (77), Expect = 0.041
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +1
Query: 460 FAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 615
F GE+ + R++ P++ K GY FV F A A++ NG++L I
Sbjct: 702 FNDVGEVVSVRLIVSPES-KHVGYGFVEFASPCLANMALEKKNGEYLHDHKI 752
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 35.1 bits (77), Expect = 0.041
Identities = 21/62 (33%), Positives = 34/62 (54%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
++V L+ + + E F+ +G I + + D + +GYAFV F K A AAI+A+
Sbjct: 209 LYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKI-CRGYAFVQFSCKEMALAAIKAL 267
Query: 586 NG 591
NG
Sbjct: 268 NG 269
Score = 34.3 bits (75), Expect = 0.071
Identities = 15/64 (23%), Positives = 31/64 (48%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
++V +S +R+ F +G ++ + +D T + Y F+ + K + AAI A+
Sbjct: 112 LYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYCFIKYKKVEEGNAAIAAL 171
Query: 586 NGQW 597
Q+
Sbjct: 172 TEQF 175
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 35.1 bits (77), Expect = 0.041
Identities = 19/64 (29%), Positives = 35/64 (54%)
Frame = +1
Query: 400 HHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ 579
++++VG L+PE + L E F +G+I + S+G+AF+ + +A AA +
Sbjct: 18 NNLWVGSLTPETTESDLTELFGRYGDIDRITV------YSSRGFAFIYYRHVEEAVAAKE 71
Query: 580 AMNG 591
A+ G
Sbjct: 72 ALQG 75
Score = 30.7 bits (66), Expect = 0.88
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +1
Query: 142 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 273
L+VG+L P TE L LFG+ GD+ + G +AF+ +
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITVYSSRG---FAFIYY 60
>At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing
protein low similarity to poly(A) binding protein II
from [Xenopus laevis] GI:11527140, [Mus musculus]
GI:2351846, [Bos taurus] GI:1051125; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) domain
Length = 537
Score = 34.7 bits (76), Expect = 0.054
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = +1
Query: 472 GEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIR 618
G + N +V DP T KG AFV+F K A+ A++G SR I+
Sbjct: 469 GAVQNVIVVTDPVTRHPKGTAFVTFATKESVGKAV-ALSGTMFYSRPIK 516
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 34.7 bits (76), Expect = 0.054
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
++VG+L +I + + F+ +G + + P + GYAFV F DAE AI
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP---RPPGYAFVEFDDARDAEDAIHGR 65
Query: 586 NG 591
+G
Sbjct: 66 DG 67
Score = 30.7 bits (66), Expect = 0.88
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +1
Query: 136 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 273
+T+YVGNL + E + LF + G V + P YAF+EF
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEF 52
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 34.7 bits (76), Expect = 0.054
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
++VG+L +I + + F+ +G + + P + GYAFV F DAE AI
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP---RPPGYAFVEFDDARDAEDAIHGR 65
Query: 586 NG 591
+G
Sbjct: 66 DG 67
Score = 30.7 bits (66), Expect = 0.88
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +1
Query: 136 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 273
+T+YVGNL + E + LF + G V + P YAF+EF
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEF 52
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 34.7 bits (76), Expect = 0.054
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
++VG+L +I + + F+ +G + + P + GYAFV F DAE AI
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP---RPPGYAFVEFDDARDAEDAIHGR 65
Query: 586 NG 591
+G
Sbjct: 66 DG 67
Score = 30.7 bits (66), Expect = 0.88
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +1
Query: 136 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 273
+T+YVGNL + E + LF + G V + P YAF+EF
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEF 52
>At5g24440.1 68418.m02880 RNA-binding protein, putative
Length = 320
Score = 33.9 bits (74), Expect = 0.094
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +1
Query: 136 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND-PYAFLEFT 276
+T+YV ++D VTE L +LF G V C++ + + +AF+EFT
Sbjct: 137 RTVYVSDIDNQVTEEQLASLFLSCGQVVDCRMCGDYKSILRFAFIEFT 184
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 33.9 bits (74), Expect = 0.094
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
I+VG+L +I + + F+ +G + + P + GYAFV F DA+ AI
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPP---RPPGYAFVEFEDARDADDAIYGR 65
Query: 586 NG 591
+G
Sbjct: 66 DG 67
Score = 31.1 bits (67), Expect = 0.66
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +1
Query: 136 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 273
+T+YVGNL + E + LF + G V + P YAF+EF
Sbjct: 7 RTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEF 52
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 33.9 bits (74), Expect = 0.094
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
I+VG+L +I + + F+ +G + + P + GYAFV F DA+ AI
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPP---RPPGYAFVEFEDARDADDAIYGR 65
Query: 586 NG 591
+G
Sbjct: 66 DG 67
Score = 31.1 bits (67), Expect = 0.66
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +1
Query: 136 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 273
+T+YVGNL + E + LF + G V + P YAF+EF
Sbjct: 7 RTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEF 52
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 33.9 bits (74), Expect = 0.094
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = +1
Query: 403 HIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQA 582
H++VG+ + + L F+ FG + +KS GYAFV F + DAE AI+
Sbjct: 3 HVYVGNFDYDTRHSDLERLFSKFGRVKRV-------DMKS-GYAFVYFEDERDAEDAIRR 54
Query: 583 MNGQWL--GSRSIRTNWS 630
+ G R + W+
Sbjct: 55 TDNTTFGYGRRKLSVEWA 72
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 33.1 bits (72), Expect = 0.16
Identities = 21/71 (29%), Positives = 34/71 (47%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
I+VG+L +I + + + F +G I + + P + Y FV F DAE AI+
Sbjct: 9 IYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPP---RPPCYCFVEFEHSRDAEDAIKGR 65
Query: 586 NGQWLGSRSIR 618
+G L +R
Sbjct: 66 DGYNLDGCRLR 76
>At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing
protein similar to SP|P42731 Polyadenylate-binding
protein 2 (Poly(A) binding protein 2) (PABP 2)
{Arabidopsis thaliana}; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 423
Score = 33.1 bits (72), Expect = 0.16
Identities = 18/70 (25%), Positives = 36/70 (51%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
+FV +LSP+ + + GE+ + R++ + + K G AFV F+ +A+ ++
Sbjct: 129 LFVANLSPQTKILDIFGFCQDVGEVVSVRLIANHED-KPVGCAFVEFLSANEAKKVLENK 187
Query: 586 NGQWLGSRSI 615
NG++ I
Sbjct: 188 NGEYFHGHKI 197
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 33.1 bits (72), Expect = 0.16
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
+FVG+L + + +G + + + + KSKGY V F A A A + M
Sbjct: 204 LFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAAACKEGM 263
Query: 586 NG 591
NG
Sbjct: 264 NG 265
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 32.7 bits (71), Expect = 0.22
Identities = 19/62 (30%), Positives = 26/62 (41%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
+FVGDL L +G + + + + KSKGY V F A A A+
Sbjct: 236 LFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACKDAL 295
Query: 586 NG 591
NG
Sbjct: 296 NG 297
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 32.7 bits (71), Expect = 0.22
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
++VG L+ + +R+ F GEI + RI L K AFV++ + AE A + +
Sbjct: 230 LYVGGLNSRVLEQDIRDQFYAHGEIESIRI------LAEKACAFVTYTTREGAEKAAEEL 283
Query: 586 NGQW-LGSRSIRTNWSTRKPP 645
+ + + + ++ W + P
Sbjct: 284 SNRLVVNGQRLKLTWGRPQVP 304
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 32.7 bits (71), Expect = 0.22
Identities = 23/89 (25%), Positives = 40/89 (44%)
Frame = +1
Query: 139 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNK 318
+L + NL+P+V+ L +F G+VK ++ P F+EF MN
Sbjct: 184 SLVIMNLEPTVSSSTLRHIFQVYGEVK--QVRETPCKREQRFVEFFDVRDAAKALRVMNG 241
Query: 319 RVVLDKEMKVNWATSPGNQPKTDTSNHHH 405
+V+ K M + ++ G K ++H H
Sbjct: 242 KVISGKPMVIQFSRPGGLTKKLFFASHFH 270
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/73 (21%), Positives = 32/73 (43%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
I++G ++ +E + + G + +C DP T K KG+ F F AI+ +
Sbjct: 206 IYIGKIAT-VENDFMMSILEFCGHVKSCLRAEDPTTKKPKGFGFYEFESAEGILRAIRLL 264
Query: 586 NGQWLGSRSIRTN 624
+ + + + N
Sbjct: 265 TQRTIDGQELLVN 277
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 32.3 bits (70), Expect = 0.29
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
I+VG+L +I + + F +G I + + P + GYAFV F DA+ AI
Sbjct: 9 IYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPP---RPPGYAFVEFEDPRDADDAIYGR 65
Query: 586 NG 591
+G
Sbjct: 66 DG 67
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +1
Query: 136 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 273
+T+YVGNL + + + LF + G + + P YAF+EF
Sbjct: 7 RTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEF 52
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 31.9 bits (69), Expect = 0.38
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
+FVG+ E + L F +G + D +KS GYAFV F + DAE AI+ +
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRV-------DRVDMKS-GYAFVYFEDERDAEDAIRKL 55
Query: 586 NGQWLG--SRSIRTNWS 630
+ G R + W+
Sbjct: 56 DNFPFGYEKRRLSVEWA 72
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 31.9 bits (69), Expect = 0.38
Identities = 23/86 (26%), Positives = 36/86 (41%)
Frame = +1
Query: 385 DTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADA 564
D + ++VG LS T L F+ +G + + + RD YAFV F DA
Sbjct: 6 DRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD--------YAFVEFGDPRDA 57
Query: 565 EAAIQAMNGQWLGSRSIRTNWSTRKP 642
+ A ++G+ I +S P
Sbjct: 58 DDARHYLDGRDFDGSRITVEFSRGAP 83
>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
protein
Length = 987
Score = 31.1 bits (67), Expect = 0.66
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = +1
Query: 412 VGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNG 591
V +LSP + T LR+ F+ G + +C I SK A++ + +A AA+ N
Sbjct: 355 VSNLSPSLTTEQLRQLFSFCGTVVDCSIT------DSKHIAYIEYSNSEEATAALALNNT 408
Query: 592 QWLG 603
+ G
Sbjct: 409 EVFG 412
Score = 30.3 bits (65), Expect = 1.2
Identities = 24/87 (27%), Positives = 39/87 (44%)
Frame = +1
Query: 136 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMN 315
K L V NL PS+T L LF G V C I + A++E++ + +N
Sbjct: 351 KFLQVSNLSPSLTTEQLRQLFSFCGTVVDCSI---TDSKHIAYIEYS-NSEEATAALALN 406
Query: 316 KRVVLDKEMKVNWATSPGNQPKTDTSN 396
V + + V A S ++P ++ S+
Sbjct: 407 NTEVFGRALNVEIAKSLPHKPSSNNSS 433
>At2g45260.1 68415.m05634 expressed protein contains Pfam profile
PF04859: Plant protein of unknown function (DUF641
Length = 425
Score = 31.1 bits (67), Expect = 0.66
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +1
Query: 97 RLR*ANMGDESHPKTLYVG-NLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPY 258
+LR +N + HP+ + N +P E + LFG I +K I + + PY
Sbjct: 10 QLRESNNNQKVHPQPMEESINQNPEAMEALISNLFGNISSLKSAYIELQSAHTPY 64
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 30.7 bits (66), Expect = 0.88
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = +1
Query: 385 DTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADA 564
D + ++VG LS T L F+ +G + + + RD YAFV F DA
Sbjct: 6 DRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD--------YAFVEFSDPRDA 57
Query: 565 EAAIQAMNGQ-WLGSR 609
+ A ++G+ + GSR
Sbjct: 58 DDARYYLDGRDFDGSR 73
>At1g05400.1 68414.m00548 hypothetical protein contains Pfam profile
PF04396: Protein of unknown function, DUF537
Length = 161
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 183 PMYVVWSNRRCKRLQDYTGARK*PVCISRVYVSHG 287
P+YV W +RC DY R P CI R+ G
Sbjct: 13 PVYVYWDMKRCPVPDDYDARRVGP-CIKRILRKSG 46
>At1g79100.1 68414.m09223 arginine/serine-rich protein-related
similar to arginine/serine-rich protein [Arabidopsis
thaliana] GI:6601502
Length = 70
Score = 29.5 bits (63), Expect = 2.0
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +1
Query: 469 FGEISNCRIVRDPQTLKSKGYAFVSF-VKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPP 645
FGEI + ++ D S+G A+V F K ADAE M+G + R IR + + R+ P
Sbjct: 11 FGEIIHVQLAIDRAANLSRGDAYVEFKAKIADAEKPQLYMDGGY--PRRIRGSPALRRSP 68
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 29.1 bits (62), Expect = 2.7
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRI 495
+FVG+L +++ ++ + F+ FGE+ + RI
Sbjct: 173 VFVGNLPLKVKKKVILKEFSKFGEVESVRI 202
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +1
Query: 109 ANMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDV 216
A+ D +Y+ NL P VT L LFG IG V
Sbjct: 271 ADCDDNCDNARIYISNLPPDVTTDELKDLFGGIGQV 306
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +1
Query: 109 ANMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDV 216
A+ D +Y+ NL P VT L LFG IG V
Sbjct: 271 ADCDDNCDNARIYISNLPPDVTTDELKDLFGGIGQV 306
>At2g35920.1 68415.m04409 helicase domain-containing protein similar
to DEIH-box RNA/DNA helicase [Arabidopsis thaliana]
GI:5881579; contains Pfam profiles PF04408: Helicase
associated domain (HA2), PF00271: Helicase conserved
C-terminal domain
Length = 995
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 285 GGGHSAGRH-EQASGPRQGNEG*LGDESW 368
GGGHS+GR + G R G G G++ W
Sbjct: 14 GGGHSSGRRGGRGGGGRGGGGGGRGEQRW 42
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 28.3 bits (60), Expect = 4.7
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = +1
Query: 406 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 585
++V +L I + + + F +G I RI D T KG AFV + DA+ A+ +
Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKAT---KGTAFVVYEDIYDAKNAVDHL 77
Query: 586 NG 591
+G
Sbjct: 78 SG 79
>At3g21215.1 68416.m02681 RNA-binding protein, putative contains RNA
recognition motif, Pfam:PF00076; contains AT-AC splice
sites at intron 8
Length = 339
Score = 28.3 bits (60), Expect = 4.7
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +1
Query: 112 NMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 273
N+ D TL++GNL ++ E L +L K KI+R+ F+EF
Sbjct: 225 NIKDNPPCNTLFIGNLGENINEEELRSLLSAQPGFKQMKILRQE-RHTVCFIEF 277
>At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing
protein
Length = 90
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = +1
Query: 409 FVGDLSPEIETNILREAFAPFGEI--SNCR 492
+VG+L + E N L+ AF+ FG++ SN R
Sbjct: 11 YVGNLESDTEENDLKNAFSQFGDVIHSNVR 40
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 142 LYVGNLDPSVTEVFLCTLFGQIGDVK 219
LY+ NLD V+ + LF ++GD+K
Sbjct: 110 LYISNLDYGVSNEDIKELFSEVGDLK 135
>At3g24440.1 68416.m03067 fibronectin type III domain-containing
protein contains Pfam profile PF00041: Fibronectin type
III domain
Length = 602
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = -3
Query: 297 CGRRRVTRKLEKCIRVISWLP---YNLATFYIAYLT 199
C + LEKC++VI WL + TF + +LT
Sbjct: 514 CDSSSIDDTLEKCVKVIRWLEREGHIKTTFRVRFLT 549
>At1g66260.1 68414.m07522 RNA and export factor-binding protein,
putative similar to GI:7159943 from [Mus musculus] (RNA
6 (4), 638-650 (2000))
Length = 295
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 139 TLYVGNLDPSVTEVFLCTLFGQIGDVK 219
T+Y+ NLD VT + L+ +IG++K
Sbjct: 108 TVYITNLDQGVTNEDIRELYAEIGELK 134
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,932,538
Number of Sequences: 28952
Number of extensions: 319743
Number of successful extensions: 1269
Number of sequences better than 10.0: 217
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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