Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0661
         (351 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    26   1.5  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      26   1.5  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   2.0  
SPBC1A4.06c |||mitochondrial matrix protein import protein|Schiz...    24   6.0  

>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = +2

Query: 14  ICSIHSLIFHQASLRARSEICKG*SKIDTFYLHNMCNRNKMADQNSIPTNADSTRTPVPF 193
           + S+H +   Q+ + ARS    G   +  F  H   + +K  + +S P +  +T+TP P 
Sbjct: 631 LASLHDMRKSQSPICARSATSAG---LPRFEYHT--SLSKSLEHSSTPASLQATKTPSPS 685

Query: 194 Y 196
           +
Sbjct: 686 F 686


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 1   LNEHNLFNTFLDIPPGLVE 57
           L EHN+FNTFL    G+V+
Sbjct: 585 LLEHNIFNTFLVYNEGIVK 603


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 155  VSNFDPPFCFCCTYYVNKK 99
            VSN  PPF  C TY ++K+
Sbjct: 3032 VSNIGPPFPNCSTYILSKE 3050


>SPBC1A4.06c |||mitochondrial matrix protein import
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 14/51 (27%), Positives = 29/51 (56%)
 Frame = +3

Query: 153 YLPTLIQRGHLCHFIFVAQSV*SLDVAMNAKRLIVTASVTEVLLAMIINNL 305
           YLP L     + HFI  ++ + S+D + N++ L    ++T+  ++ ++N L
Sbjct: 262 YLPLLYAEPGV-HFIESSEVLKSMDPSDNSRYLSFHQNITKDSISRLLNGL 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,307,435
Number of Sequences: 5004
Number of extensions: 24838
Number of successful extensions: 63
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)