Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0661
         (351 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0674 - 5502275-5502954,5503054-5504746                           27   4.1  
10_08_1024 + 22371260-22371481,22371514-22372188,22372291-223732...    27   4.1  
07_01_0173 - 1212858-1213805,1214982-1215642,1215699-1215724,121...    27   4.1  
10_03_0002 - 6858257-6861205                                           27   5.5  
11_04_0341 - 16565757-16566418,16566668-16567799,16567965-16568549     26   7.2  
10_01_0127 - 1519803-1520036,1520802-1521095,1521840-1522614,152...    26   7.2  
07_03_1436 - 26543846-26546806                                         26   7.2  
06_03_0390 - 20280355-20281178,20281392-20281565,20281613-20281847     26   7.2  

>11_01_0674 - 5502275-5502954,5503054-5504746
          Length = 790

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +2

Query: 188 PFYFCCTECIKFGCCH-ERQTF-NC-DGFSNRS 277
           PF FC   C  FG C   R+ F +C +GFS +S
Sbjct: 324 PFSFCIATCGPFGVCDGSRKPFCDCMEGFSPKS 356


>10_08_1024 +
           22371260-22371481,22371514-22372188,22372291-22373236,
           22389377-22389552
          Length = 672

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 113 NMCNRNKMADQNSIPTNADSTRTP 184
           N+ N+ K     S+P N+ STRTP
Sbjct: 136 NILNQTKTMIATSVPANSASTRTP 159


>07_01_0173 -
           1212858-1213805,1214982-1215642,1215699-1215724,
           1216037-1216121,1216382-1216404,1216463-1216465
          Length = 581

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 131 KMADQNSIPTNADSTRTPVPFYFCCTECIK 220
           K+  +N+I TN  S    V FY  C  C++
Sbjct: 355 KLLKENNIWTNGSSDSCVVTFYSSCRNCLE 384


>10_03_0002 - 6858257-6861205
          Length = 982

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 104 YLHNMCNRNKMADQNSIPTNADSTRTP 184
           ++ N+ N+ K     S+P N++S RTP
Sbjct: 306 HVDNILNQTKTMIAASVPVNSESVRTP 332


>11_04_0341 - 16565757-16566418,16566668-16567799,16567965-16568549
          Length = 792

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 113 NMCNRNKMADQNSIPTNADSTRTP 184
           N+ N+ K     S+P N+ STRTP
Sbjct: 257 NILNQTKTMIAASVPVNSASTRTP 280


>10_01_0127 -
           1519803-1520036,1520802-1521095,1521840-1522614,
           1524574-1525412
          Length = 713

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 115 YVQQKQNGGSKFDTYQR*FN 174
           +VQQ QNGGS F+  +  FN
Sbjct: 462 FVQQTQNGGSLFEQGENYFN 481


>07_03_1436 - 26543846-26546806
          Length = 986

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 113 NMCNRNKMADQNSIPTNADSTRTP 184
           N+ N+ K     S+P N+ STRTP
Sbjct: 312 NILNQTKTMIAASVPANSASTRTP 335


>06_03_0390 - 20280355-20281178,20281392-20281565,20281613-20281847
          Length = 410

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 113 NMCNRNKMADQNSIPTNADSTRTP 184
           N+ N+ K     S+P N+ STRTP
Sbjct: 112 NILNQTKTMIAASVPANSASTRTP 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,093,082
Number of Sequences: 37544
Number of extensions: 145866
Number of successful extensions: 278
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)