Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0661
         (351 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49585| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.4  
SB_10216| Best HMM Match : RVT_1 (HMM E-Value=0.00039)                 28   1.9  
SB_51246| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.2  
SB_33819| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.2  
SB_27413| Best HMM Match : 7tm_1 (HMM E-Value=6.5e-08)                 27   3.2  
SB_9691| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-08)                  27   3.2  
SB_30074| Best HMM Match : PAN (HMM E-Value=3.3e-07)                   27   5.7  
SB_21913| Best HMM Match : C2 (HMM E-Value=0.31)                       26   7.5  
SB_57150| Best HMM Match : ThiF (HMM E-Value=2.8e-35)                  26   7.5  

>SB_49585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 100 SVYFRSAFTNFRSSSQRGLVEYQGM 26
           S YF + FTN    SQ+G++E QG+
Sbjct: 60  SDYFYAMFTNDMLESQKGVIELQGL 84


>SB_10216| Best HMM Match : RVT_1 (HMM E-Value=0.00039)
          Length = 566

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 17/54 (31%), Positives = 21/54 (38%)
 Frame = +2

Query: 137 ADQNSIPTNADSTRTPVPFYFCCTECIKFGCCHERQTFNCDGFSNRSFVSDDNQ 298
           A QN       S   PV    CC    ++   H + T N     +R  V DDNQ
Sbjct: 489 APQNQHEDQRQSFHPPVLSAGCCIYSFQYTVTHIKGTDNASDVLSRLPVGDDNQ 542


>SB_51246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 105 IYIICATETKWRIKIRYLPTLIQRGHLCHFI 197
           IY++  T T+  +   ++ T +QR H C+F+
Sbjct: 242 IYLLFITSTRRSVSYEHM-TRLQRSHFCYFV 271


>SB_33819| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 618

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +3

Query: 105 IYIICATETKWRIKIRYLPTLIQRGHLCHFI 197
           +Y++  T T+  +   ++ T +QR H C+F+
Sbjct: 359 VYLLLITSTRRSVSYEHM-TRLQRSHFCYFV 388


>SB_27413| Best HMM Match : 7tm_1 (HMM E-Value=6.5e-08)
          Length = 646

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +3

Query: 105 IYIICATETKWRIKIRYLPTLIQRGHLCHFI 197
           +Y++  T T+  +   ++ T +QR H C+F+
Sbjct: 280 VYLLLITSTRRSVSYEHM-TRLQRSHFCYFV 309



 Score = 27.5 bits (58), Expect = 3.2
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +3

Query: 105 IYIICATETKWRIKIRYLPTLIQRGHLCHFI 197
           +Y++  T T+  +   ++ T +QR H C+F+
Sbjct: 402 VYLLLITSTRRSVSYEHM-TRLQRSHFCYFV 431


>SB_9691| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-08)
          Length = 419

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +3

Query: 105 IYIICATETKWRIKIRYLPTLIQRGHLCHFI 197
           +Y++  T T+  +   ++ T +QR H C+F+
Sbjct: 161 VYLLLITSTRRSVSYEHM-TRLQRSHFCYFV 190


>SB_30074| Best HMM Match : PAN (HMM E-Value=3.3e-07)
          Length = 221

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
 Frame = +2

Query: 170 STRTPVPFYFCCTECIKFGCCHE---RQTFNCDGFSNRSFVSDDN 295
           S   P P Y   T CIK    HE   R    C G ++ SFV++ N
Sbjct: 155 SVNQPCPHYAAGTICIKKDTVHETLLRIRDLCQGNNSCSFVANTN 199


>SB_21913| Best HMM Match : C2 (HMM E-Value=0.31)
          Length = 987

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 15/48 (31%), Positives = 18/48 (37%), Gaps = 7/48 (14%)
 Frame = +2

Query: 110 HNMCNRNKMADQNSIPTNADSTRTP-VP------FYFCCTECIKFGCC 232
           H   + N   D N    + D   TP VP      +Y CC  C    CC
Sbjct: 398 HADVSNNYYGDDNDDNADDDQGHTPFVPVVWLSCYYLCCCRCFCRSCC 445


>SB_57150| Best HMM Match : ThiF (HMM E-Value=2.8e-35)
          Length = 1026

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 248 TFGVHGNIQTLYTLCNKNKMAQV 180
           T G  GN+Q L TL N+N   QV
Sbjct: 444 TLGTKGNVQVLATLKNRNWYYQV 466


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,613,135
Number of Sequences: 59808
Number of extensions: 186254
Number of successful extensions: 374
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 535585339
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)