Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0661
         (351 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66521-1|CAA91393.2|  382|Caenorhabditis elegans Hypothetical pr...    27   3.8  
Z82261-4|CAB05147.1|  203|Caenorhabditis elegans Hypothetical pr...    26   6.6  
Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical pr...    26   8.7  
Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical pr...    26   8.7  
AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis p...    26   8.7  
AF068717-2|AAC17763.1|  325|Caenorhabditis elegans Serpentine re...    26   8.7  

>Z66521-1|CAA91393.2|  382|Caenorhabditis elegans Hypothetical
           protein W02B12.1 protein.
          Length = 382

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +2

Query: 230 CHERQTFNCDGFSNRSFVSDDNQ 298
           C    TF CD  SN+ F  DD Q
Sbjct: 236 CEGLHTFECDCESNKQFTDDDIQ 258


>Z82261-4|CAB05147.1|  203|Caenorhabditis elegans Hypothetical
           protein C35D6.4 protein.
          Length = 203

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 106 FT*YVQQKQNGGSKFDTYQR*FNADTCAILFLLHRVYK 219
           F+ +VQQ + G  K  +YQ   N D C I   LH+  K
Sbjct: 44  FSRFVQQNETG-HKLTSYQSLANRDPCTIPDELHQEMK 80


>Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical protein
            F18C12.2b protein.
          Length = 2271

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +2

Query: 101  FYLHNMCNRNKMADQNSIPTNADSTRTPVPFYFCC 205
            +YL ++CN+ +  D           R P+PF  CC
Sbjct: 1276 YYLRHLCNKQRFPDW--------EIRDPIPFLRCC 1302


>Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical protein
            F18C12.2a protein.
          Length = 2279

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +2

Query: 101  FYLHNMCNRNKMADQNSIPTNADSTRTPVPFYFCC 205
            +YL ++CN+ +  D           R P+PF  CC
Sbjct: 1276 YYLRHLCNKQRFPDW--------EIRDPIPFLRCC 1302


>AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis
            protein RME-8 protein.
          Length = 2279

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +2

Query: 101  FYLHNMCNRNKMADQNSIPTNADSTRTPVPFYFCC 205
            +YL ++CN+ +  D           R P+PF  CC
Sbjct: 1276 YYLRHLCNKQRFPDW--------EIRDPIPFLRCC 1302


>AF068717-2|AAC17763.1|  325|Caenorhabditis elegans Serpentine
           receptor, class h protein248 protein.
          Length = 325

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 169 FNADTCAILFLLHRVYKVWML 231
           F  +TC ++ L+HR Y+ + L
Sbjct: 282 FGLETCVVMILVHRPYREYAL 302


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,336,480
Number of Sequences: 27780
Number of extensions: 146949
Number of successful extensions: 323
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)