Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0661
         (351 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   1.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   1.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   4.2  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   4.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   5.6  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    20   7.4  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    20   9.8  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -3

Query: 211 LCATKIKWHRCP 176
           LC T   WH CP
Sbjct: 466 LCNTLHHWHHCP 477


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 6/21 (28%), Positives = 11/21 (52%)
 Frame = -1

Query: 261 PSQLNVWRSWQHPNFIHSVQQ 199
           P+    WR W+ PN +  + +
Sbjct: 856 PAVYEDWRHWKFPNLVEVLDE 876


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 227 CCHERQTFNCDGFSNRSFVSDDN 295
           CC  R   +  G SNRS  S ++
Sbjct: 88  CCGMRWPGDATGLSNRSSTSSND 110


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 86  SKIDTFYLHNMCNRNKMADQNSIPTNADSTR 178
           +KID ++LH M N   + D   +  N D T+
Sbjct: 274 TKIDKWFLHKMKN---IIDYYLVLENTDHTK 301


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 257 DGFSNRSFVSDDNQ 298
           DG+S R  VSD N+
Sbjct: 376 DGWSARGLVSDGNE 389


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = -1

Query: 57  LNEAWWNIK 31
           +N+ WWN+K
Sbjct: 363 MNKWWWNMK 371


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +2

Query: 170 STRTPVPFYFCCTE 211
           S R  V +Y CC E
Sbjct: 185 SARRNVEYYSCCPE 198


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,300
Number of Sequences: 438
Number of extensions: 1881
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)