Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0661
         (351 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g50010.1 68416.m05468 DC1 domain-containing protein contains ...    28   1.5  
At4g14965.1 68417.m02300 cytochrome b5 domain-containing protein...    28   2.0  
At3g52030.1 68416.m05707 F-box family protein / WD-40 repeat fam...    27   2.7  
At2g23550.2 68415.m02811 hydrolase, alpha/beta fold family prote...    26   6.1  
At2g23550.1 68415.m02810 hydrolase, alpha/beta fold family prote...    26   6.1  
At1g76970.1 68414.m08962 VHS domain-containing protein / GAT dom...    26   8.1  

>At3g50010.1 68416.m05468 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 769

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = +2

Query: 101 FYLHNMCN-RNKMADQNSIPTNADSTRTPVPFYFCCTECIKFGCCHERQTFNC 256
           FYLH  C   ++  D  S       T  P      C+ C K G C  ++TFNC
Sbjct: 571 FYLHVQCAIASEPLDHPSHIHPLYLTSKPDEEQRKCSVCKKSGHCPTKETFNC 623


>At4g14965.1 68417.m02300 cytochrome b5 domain-containing protein
           similar to SP|O15173 Membrane associated progesterone
           receptor component 2 (Steroid receptor protein DG6)
           {Homo sapiens}; contains Pfam profile PF00173:
           Heme/Steroid binding domain
          Length = 245

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -3

Query: 151 RILIRHFVSVAHIM*IKSVYFRSAFTNFRSSSQRGL 44
           R L+  FV V  I+ + S+YFRS+F + +   Q+ L
Sbjct: 6   RFLLSPFVGVTFIVVLVSLYFRSSFKSPQHQYQKRL 41


>At3g52030.1 68416.m05707 F-box family protein / WD-40 repeat family
           protein 
          Length = 454

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 246 VWRSWQHPNFIHSVQQK*NGTGVRVESALVGI 151
           +W     PN ++S+QQ  N T V V   + G+
Sbjct: 338 LWEKRVSPNVVYSIQQLRNDTSVMVAGGIDGV 369


>At2g23550.2 68415.m02811 hydrolase, alpha/beta fold family protein
           similar to ethylene-induced esterase [Citrus sinensis]
           GI:14279437, polyneuridine aldehyde esterase [Rauvolfia
           serpentina] GI:6651393; contains Pfam profile PF00561:
           hydrolase, alpha/beta fold family
          Length = 243

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -2

Query: 236 HGNIQTLYTLCNKNKMAQVSALNQRW*VSNFDP 138
           +G++  +Y +C ++ + +V    QRW +SNF P
Sbjct: 178 YGSVTRIYIVCRED-LVEVEDY-QRWMISNFPP 208


>At2g23550.1 68415.m02810 hydrolase, alpha/beta fold family protein
           similar to ethylene-induced esterase [Citrus sinensis]
           GI:14279437, polyneuridine aldehyde esterase [Rauvolfia
           serpentina] GI:6651393; contains Pfam profile PF00561:
           hydrolase, alpha/beta fold family
          Length = 272

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -2

Query: 236 HGNIQTLYTLCNKNKMAQVSALNQRW*VSNFDP 138
           +G++  +Y +C ++ + +V    QRW +SNF P
Sbjct: 207 YGSVTRIYIVCRED-LVEVEDY-QRWMISNFPP 237


>At1g76970.1 68414.m08962 VHS domain-containing protein / GAT
           domain-containing protein weak similarity to
           HGF-regulated tyrosine kinase substrate [Mus musculus]
           GI:1089781; contains Pfam profiles PF00790: VHS domain,
           PF03127: GAT domain
          Length = 446

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 71  ICKG*SKIDTFYLHNMCNRNKMADQNSIPTNADSTRTPVP 190
           +C+G +  D    H +   + +A+  S+P+N  +TR P P
Sbjct: 238 LCQGLALNDNLQ-HVLQRHDDIANVGSVPSNGRNTRAPPP 276


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,690,776
Number of Sequences: 28952
Number of extensions: 126249
Number of successful extensions: 264
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 439384704
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)