Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0659
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0359 - 28269236-28269541,28270857-28270919,28271439-282714...    33   0.23 
04_04_1647 + 35032328-35033803                                         31   0.70 
05_04_0337 - 20372378-20373094,20373320-20373379,20373992-203742...    30   1.6  
03_01_0564 - 4176177-4178096                                           29   3.8  
07_03_0635 + 20151861-20152249,20152589-20152709,20154914-201549...    28   5.0  
04_04_0326 - 24407201-24407374,24407397-24407460,24408266-244086...    28   6.6  
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308...    27   8.7  

>02_05_0359 -
           28269236-28269541,28270857-28270919,28271439-28271459,
           28271660-28271716,28271789-28271874,28271982-28272039,
           28272176-28272311,28272799-28273073,28273564-28273602,
           28274052-28274143,28274422-28274454,28275041-28275088,
           28275191-28275323
          Length = 448

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = +2

Query: 242 SGCRQPS--CQWRPSPDPGQVRSCPRCPSLHTG 334
           SGCR+      WR SP    ++ CP C   HTG
Sbjct: 403 SGCREAGGPWTWRESPASRAMQKCPACKRTHTG 435


>04_04_1647 + 35032328-35033803
          Length = 491

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = +2

Query: 245 GCRQPSCQWRPSPDP-GQVRSCPRCP 319
           GCR PSC W  SPD     R+   CP
Sbjct: 150 GCRNPSCLWIHSPDHLSDCRAASSCP 175


>05_04_0337 -
           20372378-20373094,20373320-20373379,20373992-20374266,
           20374358-20374619
          Length = 437

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +2

Query: 257 PSCQWRPSPDPGQVRSCPRCPSLHTGIRSECRSPCSRP 370
           P+C+ RPSP      +  +  S H  ++ EC +  + P
Sbjct: 252 PACRHRPSPSSSSTTTAQQHTSFHQLLQGECSAAAAAP 289


>03_01_0564 - 4176177-4178096
          Length = 639

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/51 (21%), Positives = 27/51 (52%)
 Frame = +1

Query: 184 RRSIYPWVLWSYLSTMTWYQRLSATILSMETLAGSWPGSELSPMSITTYGY 336
           RR ++PWVL  ++ ++ W+  ++  ++++    G   G   S + +T   +
Sbjct: 467 RRFLFPWVLGGFVMSIIWFYIIANELVALLVAFGVILGINPSILGLTVLAW 517


>07_03_0635 +
           20151861-20152249,20152589-20152709,20154914-20154996,
           20155819-20155903,20155987-20156277,20156555-20156645,
           20157380-20158280,20158401-20158561,20158759-20158862,
           20159040-20159205,20159283-20159378,20159694-20159800,
           20160443-20160775,20161393-20161599,20161774-20161857,
           20162887-20163020,20163166-20163393,20163541-20163712,
           20164301-20164555,20164647-20164919
          Length = 1426

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +1

Query: 181 ARRSIYPWVLWSYLSTMTWYQRLSATILSMETLAGSW--PGSELSPMSITTYGYPF 342
           +R+ I PW +W Y ++   Y   + ++   E LA  W  P ++ S +S  T G  F
Sbjct: 706 SRKDIKPWWIWGYWTSPMMYSNNALSV--NEFLASRWAIPNND-SSISAPTIGKAF 758


>04_04_0326 -
           24407201-24407374,24407397-24407460,24408266-24408689,
           24408885-24409057,24409178-24409275,24409723-24409853,
           24410053-24410174,24411091-24411245,24411976-24412081,
           24412328-24412419,24412499-24412620,24413444-24413544,
           24413636-24413849,24414173-24414311,24415228-24415584
          Length = 823

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = -2

Query: 185 LAVWPSRVQVRWPWICHDGWPRLFDASI*SSAXLLPHVRSERLDI 51
           LAV PS      PW CH    R+ +A   +S    P  R E   +
Sbjct: 731 LAVTPSMFTDHLPWRCHYAMQRVLEAQTAASCPDSPESRIELFSV 775


>01_01_0409 -
           3084821-3084988,3085069-3085155,3085270-3085476,
           3085904-3085985,3086085-3086275,3086410-3086616,
           3086709-3086871,3087905-3087960,3088035-3088148,
           3088599-3089807
          Length = 827

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +2

Query: 209 CGVTCQR*LGTSGCRQPSCQWRPSPDPGQVRSCPRCPSL 325
           C + CQR       R+P C   P P P  +  CP C +L
Sbjct: 577 CNLPCQR------VREPPCS-HPCPLPCHLNDCPPCKAL 608


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,415,398
Number of Sequences: 37544
Number of extensions: 388917
Number of successful extensions: 1165
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)