BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0659 (600 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 02_05_0359 - 28269236-28269541,28270857-28270919,28271439-282714... 33 0.23 04_04_1647 + 35032328-35033803 31 0.70 05_04_0337 - 20372378-20373094,20373320-20373379,20373992-203742... 30 1.6 03_01_0564 - 4176177-4178096 29 3.8 07_03_0635 + 20151861-20152249,20152589-20152709,20154914-201549... 28 5.0 04_04_0326 - 24407201-24407374,24407397-24407460,24408266-244086... 28 6.6 01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 27 8.7 >02_05_0359 - 28269236-28269541,28270857-28270919,28271439-28271459, 28271660-28271716,28271789-28271874,28271982-28272039, 28272176-28272311,28272799-28273073,28273564-28273602, 28274052-28274143,28274422-28274454,28275041-28275088, 28275191-28275323 Length = 448 Score = 32.7 bits (71), Expect = 0.23 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%) Frame = +2 Query: 242 SGCRQPS--CQWRPSPDPGQVRSCPRCPSLHTG 334 SGCR+ WR SP ++ CP C HTG Sbjct: 403 SGCREAGGPWTWRESPASRAMQKCPACKRTHTG 435 >04_04_1647 + 35032328-35033803 Length = 491 Score = 31.1 bits (67), Expect = 0.70 Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%) Frame = +2 Query: 245 GCRQPSCQWRPSPDP-GQVRSCPRCP 319 GCR PSC W SPD R+ CP Sbjct: 150 GCRNPSCLWIHSPDHLSDCRAASSCP 175 >05_04_0337 - 20372378-20373094,20373320-20373379,20373992-20374266, 20374358-20374619 Length = 437 Score = 29.9 bits (64), Expect = 1.6 Identities = 11/38 (28%), Positives = 19/38 (50%) Frame = +2 Query: 257 PSCQWRPSPDPGQVRSCPRCPSLHTGIRSECRSPCSRP 370 P+C+ RPSP + + S H ++ EC + + P Sbjct: 252 PACRHRPSPSSSSTTTAQQHTSFHQLLQGECSAAAAAP 289 >03_01_0564 - 4176177-4178096 Length = 639 Score = 28.7 bits (61), Expect = 3.8 Identities = 11/51 (21%), Positives = 27/51 (52%) Frame = +1 Query: 184 RRSIYPWVLWSYLSTMTWYQRLSATILSMETLAGSWPGSELSPMSITTYGY 336 RR ++PWVL ++ ++ W+ ++ ++++ G G S + +T + Sbjct: 467 RRFLFPWVLGGFVMSIIWFYIIANELVALLVAFGVILGINPSILGLTVLAW 517 >07_03_0635 + 20151861-20152249,20152589-20152709,20154914-20154996, 20155819-20155903,20155987-20156277,20156555-20156645, 20157380-20158280,20158401-20158561,20158759-20158862, 20159040-20159205,20159283-20159378,20159694-20159800, 20160443-20160775,20161393-20161599,20161774-20161857, 20162887-20163020,20163166-20163393,20163541-20163712, 20164301-20164555,20164647-20164919 Length = 1426 Score = 28.3 bits (60), Expect = 5.0 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%) Frame = +1 Query: 181 ARRSIYPWVLWSYLSTMTWYQRLSATILSMETLAGSW--PGSELSPMSITTYGYPF 342 +R+ I PW +W Y ++ Y + ++ E LA W P ++ S +S T G F Sbjct: 706 SRKDIKPWWIWGYWTSPMMYSNNALSV--NEFLASRWAIPNND-SSISAPTIGKAF 758 >04_04_0326 - 24407201-24407374,24407397-24407460,24408266-24408689, 24408885-24409057,24409178-24409275,24409723-24409853, 24410053-24410174,24411091-24411245,24411976-24412081, 24412328-24412419,24412499-24412620,24413444-24413544, 24413636-24413849,24414173-24414311,24415228-24415584 Length = 823 Score = 27.9 bits (59), Expect = 6.6 Identities = 15/45 (33%), Positives = 19/45 (42%) Frame = -2 Query: 185 LAVWPSRVQVRWPWICHDGWPRLFDASI*SSAXLLPHVRSERLDI 51 LAV PS PW CH R+ +A +S P R E + Sbjct: 731 LAVTPSMFTDHLPWRCHYAMQRVLEAQTAASCPDSPESRIELFSV 775 >01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476, 3085904-3085985,3086085-3086275,3086410-3086616, 3086709-3086871,3087905-3087960,3088035-3088148, 3088599-3089807 Length = 827 Score = 27.5 bits (58), Expect = 8.7 Identities = 14/39 (35%), Positives = 18/39 (46%) Frame = +2 Query: 209 CGVTCQR*LGTSGCRQPSCQWRPSPDPGQVRSCPRCPSL 325 C + CQR R+P C P P P + CP C +L Sbjct: 577 CNLPCQR------VREPPCS-HPCPLPCHLNDCPPCKAL 608 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,415,398 Number of Sequences: 37544 Number of extensions: 388917 Number of successful extensions: 1165 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 1126 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1165 length of database: 14,793,348 effective HSP length: 78 effective length of database: 11,864,916 effective search space used: 1435654836 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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