SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0659
         (600 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)                      36   0.025
SB_15990| Best HMM Match : zf-CCCH (HMM E-Value=4.1)                   34   0.076
SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011)                    34   0.10 
SB_44281| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.10 
SB_9571| Best HMM Match : Plasmodium_HRP (HMM E-Value=6.2)             34   0.10 
SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 31   0.94 
SB_2337| Best HMM Match : zf-CCHC (HMM E-Value=0.0064)                 31   0.94 
SB_44732| Best HMM Match : TSP_1 (HMM E-Value=0)                       30   1.2  
SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7)               30   1.2  
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_52148| Best HMM Match : EGF (HMM E-Value=0)                         29   2.2  
SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11)          29   2.2  
SB_28303| Best HMM Match : DUF1168 (HMM E-Value=1.9)                   29   2.2  
SB_21375| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_12396| Best HMM Match : Myc-LZ (HMM E-Value=6.2e-10)                29   2.9  
SB_7863| Best HMM Match : Pentaxin (HMM E-Value=1.8)                   28   5.0  
SB_17488| Best HMM Match : Phi-29_GP3 (HMM E-Value=0.69)               28   5.0  
SB_51102| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_7039| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.6  
SB_33291| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_24577| Best HMM Match : Ribosomal_L44 (HMM E-Value=4.4)             28   6.6  
SB_26497| Best HMM Match : DUF963 (HMM E-Value=0.24)                   27   8.8  
SB_19328| Best HMM Match : RVT_1 (HMM E-Value=2e-36)                   27   8.8  
SB_13998| Best HMM Match : Kringle (HMM E-Value=0.0016)                27   8.8  
SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.8  
SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24)                  27   8.8  
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_16342| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
          Length = 451

 Score = 35.9 bits (79), Expect = 0.025
 Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = +2

Query: 410 CCEC-VTCVS--VCFYDVRVLRSECEFVCYIVPVIFSACTHEC 529
           CC C V C S  V  Y  RV    C  VCY   V+F +C   C
Sbjct: 171 CCSCRVVCYSCRVVCYSCRVACCSCRVVCYSCRVVFCSCRVAC 213


>SB_15990| Best HMM Match : zf-CCCH (HMM E-Value=4.1)
          Length = 236

 Score = 34.3 bits (75), Expect = 0.076
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
 Frame = -1

Query: 558 HITAXNKLITHS*VHALNITGTI*HTNSHSLRNTR---TS*KHTLTHVTHSQHFNTISNI 388
           H     + ++H+  H L++TG   H   H+L  TR    + +HTL HVT      T   +
Sbjct: 115 HTLHVTRYMSHATCHTLHVTGNTSHATCHTLHVTRYMSHATRHTL-HVTRYTSHATCHTL 173

Query: 387 SHYRFLGRL--HGDRHS 343
            H   + R   H  RH+
Sbjct: 174 RHTLHVTRYTSHSTRHT 190



 Score = 31.5 bits (68), Expect = 0.54
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
 Frame = -1

Query: 558 HITAXNKLITHS*VHALNITGTI*HTNSHSLRNTR---TS*KHTLTHVTHSQHFNTISNI 388
           H+T   + ++H+  H L++TG   H   H+L  TR    +  HTL HVT +    T   +
Sbjct: 90  HVT---RYMSHATCHTLHVTGNTSHATCHTLHVTRYMSHATCHTL-HVTGNTSHATCHTL 145

Query: 387 SHYRFLGRLHGDRHS 343
              R++   H  RH+
Sbjct: 146 HVTRYMS--HATRHT 158



 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -1

Query: 564 LXHITAXNKLITHS*VHALNITGTI*HTNSHSLRNTRTS*KHTLTHVTH 418
           L H     +  +HS  H L++T  + H + H L  TR +  H   H  H
Sbjct: 173 LRHTLHVTRYTSHSTRHTLHVTRYMSHASRHMLHVTRYT-SHATRHTLH 220



 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = -1

Query: 558 HITAXNKLITHS*VHALNITGTI*HTNSHSLRNTRTS*KHTLTHVTHSQH 409
           H     + ++H+  H L++T    H   H+LR+T    ++T     H+ H
Sbjct: 143 HTLHVTRYMSHATRHTLHVTRYTSHATCHTLRHTLHVTRYTSHSTRHTLH 192


>SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011)
          Length = 734

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 23/41 (56%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = -1

Query: 531 THS*VHALNITGTI*HTNSH--SLRNTRTS*KHTLTHVTHS 415
           THS  HAL  T T+ HT+SH  SL  TRT    TL H THS
Sbjct: 263 THSHSHALLFTRTLIHTHSHPHSLLFTRTIIHTTLIH-THS 302



 Score = 32.3 bits (70), Expect = 0.31
 Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -1

Query: 531 THS*VHALNITGTI*HTNSHSLRNTRTS*KHTLTHV-THSQHFNTISNISH 382
           THS  HAL+ T TI HT+SHS  +   S   TL H  +HS   +  S + H
Sbjct: 365 THSHPHALSFTRTIIHTHSHS--HHALSFTCTLIHTHSHSLALSFTSTLIH 413



 Score = 30.7 bits (66), Expect = 0.94
 Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = -1

Query: 531 THS*VHALNITGTI*HTNSHS--LRNTRTS*KHTLTH 427
           THS  HAL+ T T+ HT+SHS  L  T  +  HT +H
Sbjct: 332 THSHSHALSFTHTLIHTHSHSHALSFTPRTVIHTHSH 368



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 22/44 (50%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -1

Query: 531 THS*VHALNITGTI*HTNSHS--LRNTRTS*KHTLTHVTHSQHF 406
           THS  H L+ T T+ HT+SHS  L  TRT   HT +H  HS  F
Sbjct: 247 THSPSHTLSFTRTLIHTHSHSHALLFTRTL-IHTHSH-PHSLLF 288



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 22/46 (47%), Positives = 27/46 (58%)
 Frame = -1

Query: 531 THS*VHALNITGTI*HTNSHSLRNTRTS*KHTLTHVTHSQHFNTIS 394
           THS  H+L  T TI  T+SHS   + T   HTL H THS H + +S
Sbjct: 316 THSHPHSLLFTFTIIRTHSHSHALSFT---HTLIH-THS-HSHALS 356



 Score = 27.5 bits (58), Expect = 8.8
 Identities = 20/38 (52%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = -1

Query: 534 ITHS*VHALNITGTI*HTN--SHSLRNTRTS*KHTLTH 427
           I HS  HAL+ T TI HT+  SH+L  TRT   HT +H
Sbjct: 232 IYHS--HALSFTRTIIHTHSPSHTLSFTRTL-IHTHSH 266


>SB_44281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 292

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 12/114 (10%)
 Frame = -1

Query: 600 IIFLXYXQHXNDLX---HITAXNKLITH-------S*VHALNITGTI*HTNSHSLRNTRT 451
           ++F  Y +H N +    H    N  + H       S  H  +IT TI  T+ +++ NT  
Sbjct: 134 LVFTQYHKHTNIVSRTHHYNITNTSLQHHEHITTTSRTHHEHIT-TISRTHHYNITNTSL 192

Query: 450 S*KHTLTHV--THSQHFNTISNISHYRFLGRLHGDRHSERIPVCSDGHRGQLRT 295
                +T +  TH +H  TIS   HY         +H E I   S  H   + T
Sbjct: 193 QHHEHITTISRTHHEHITTISRTHHYNITNT--SLQHHEHITTISRTHHEHITT 244



 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -1

Query: 537 LITHS*VHALNITGTI*HTNSHSLRNTRTS*KHTLTHV--THSQHFNTISNISHY 379
           + T S  H  +IT TI  T+ +++ NT       +T +  TH +H  TIS   HY
Sbjct: 198 ITTISRTHHEHIT-TISRTHHYNITNTSLQHHEHITTISRTHHEHITTISRTHHY 251


>SB_9571| Best HMM Match : Plasmodium_HRP (HMM E-Value=6.2)
          Length = 225

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 12/114 (10%)
 Frame = -1

Query: 600 IIFLXYXQHXNDLX---HITAXNKLITH-------S*VHALNITGTI*HTNSHSLRNTRT 451
           ++F  Y +H N +    H    N  + H       S  H  +IT TI  T+ +++ NT  
Sbjct: 67  LVFTQYHKHTNIVSRTHHYNITNTSLQHHEHITTTSRTHHEHIT-TISRTHHYNITNTSL 125

Query: 450 S*KHTLTHV--THSQHFNTISNISHYRFLGRLHGDRHSERIPVCSDGHRGQLRT 295
                +T +  TH +H  TIS   HY         +H E I   S  H   + T
Sbjct: 126 QHHEHITTISRTHHEHITTISRTHHYNITNT--SLQHHEHITTISRTHHEHITT 177



 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -1

Query: 537 LITHS*VHALNITGTI*HTNSHSLRNTRTS*KHTLTHV--THSQHFNTISNISHY 379
           + T S  H  +IT TI  T+ +++ NT       +T +  TH +H  TIS   HY
Sbjct: 131 ITTISRTHHEHIT-TISRTHHYNITNTSLQHHEHITTISRTHHEHITTISRTHHY 184


>SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 1841

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -3

Query: 196 KLISSQSGPQEYRFDGRGYAT-MAGRGYLTPQSNQVLXFFRTYAPNGLI 53
           +++  ++ P+ Y FDG  YA  +     +    N V+  FRT  PNGL+
Sbjct: 749 RILKRETDPEGY-FDGSAYAEYLLNDEKVDSNKNTVMLEFRTIQPNGLL 796


>SB_2337| Best HMM Match : zf-CCHC (HMM E-Value=0.0064)
          Length = 422

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +2

Query: 290 GQVRSCPRCPSLHTGIRSECRSPCSRPKKR*CEILEIVLKCCEC 421
           GQ +SC RC  +  G++ EC  P  RP +R  E L    +  +C
Sbjct: 198 GQPQSCLRCSEIGHGVK-ECTKPRRRPHRRRREELTTEQERMQC 240


>SB_44732| Best HMM Match : TSP_1 (HMM E-Value=0)
          Length = 675

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
 Frame = +2

Query: 209 CGVTCQR*--LGTSGCRQPSCQWRPSPDPGQVRSC--PRCPSLHTGIRSECRSPC 361
           C VTC     L T  C   +      P P + R C  P CP    G  SEC   C
Sbjct: 222 CSVTCGEGIQLHTVVCSTGNQSQCKKPKPSEARKCQLPACPEWTVGKWSECSRTC 276


>SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7)
          Length = 540

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 28/80 (35%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
 Frame = +2

Query: 302 SCPRCPSLHTGIRSECRSPCSRPKKR*CEILEIVLKCCECV---TCVSVCFYDVRVLRSE 472
           SC RC  LH G+ S C      P +   ++  I   C  CV     +S+CF   RVL   
Sbjct: 337 SC-RCV-LHRGLMSMCF-----PSRANVDVFHIACSCL-CVLHRVLMSMCFD--RVLMPM 386

Query: 473 CEFVCYIVPVIFSACTHECV 532
           C  +C  V V   AC+  CV
Sbjct: 387 CSPLCVHVDVFPIACSCRCV 406


>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2680

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -3

Query: 157  FDGRGYATMAGRGYLTPQSNQVLXFFRTYAPNGLIYLLKAS 35
            F G GY    G       +N++  +FRT  P+GLI  L  S
Sbjct: 1339 FPGNGYYKFPGSYVREGTTNEIELWFRTQYPDGLILFLSDS 1379


>SB_52148| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1055

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +1

Query: 49  GISSRSERTCGRRXALD*IEASNNLGQPSWHIHGHRTCTLEGQTARR 189
           G +   E  CG+R   D    +NN+ Q S  IHG+   TL+G    R
Sbjct: 684 GTNKLYECKCGQRHCGDKSNLTNNVCQFSHCIHGNCMVTLDGHRCAR 730


>SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +2

Query: 2   RATLLLRCFEYRRLEKVYQAVRSVRAEEXKHL 97
           R  L +RC++YR+L  +++A R  R ++ + L
Sbjct: 20  RFLLRVRCWQYRQLTAIHRATRPTRPDKARRL 51


>SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11)
          Length = 129

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
 Frame = -1

Query: 564 LXHITAXNKLITHS*VHALNIT------GTI*H-TNSHSLRNTRTS*KHTLTHVTHSQHF 406
           L H+T     ITHS +  L +T       T+ H T +HS     T    TLTH T +   
Sbjct: 62  LTHLTITYSTITHSTLTHLTLTHLTLTYSTLTHSTLTHSTLTHSTLTHSTLTHSTITHST 121

Query: 405 NTISNISH 382
            T SN++H
Sbjct: 122 LTHSNLTH 129


>SB_28303| Best HMM Match : DUF1168 (HMM E-Value=1.9)
          Length = 304

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/58 (27%), Positives = 31/58 (53%)
 Frame = +3

Query: 204 GSVELPVNDDLVPAVVGNHLVNGDPRRILARFGAVPDVHHYIRVSVLNADHHVVVLKN 377
           G V+ P+N D +   + N +V+G P + ++R+     VH Y  V  ++++     L+N
Sbjct: 61  GPVQNPINHDTLRGEIRN-VVSGSPSKKISRWRREYRVHFYNEVGKIDSEKLKETLQN 117


>SB_21375| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 90

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
 Frame = -1

Query: 585 YXQHXND-LXHITAXNKLITHS*VHALNITGTI*HTNSHSLRNTR--TS*KHTLT----H 427
           Y +H    + H+T   + +TH   H    TG +     H++R T   T  KH +T    H
Sbjct: 14  YTRHFTRYMRHVTRYTRHVTHYTRHVTRYTGHVTRYTRHAIRYTNHVTCYKHYITCYTRH 73

Query: 426 VT-HSQH 409
           VT H +H
Sbjct: 74  VTNHKRH 80


>SB_12396| Best HMM Match : Myc-LZ (HMM E-Value=6.2e-10)
          Length = 293

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 486 HTNSHSLRNTRTS*KHTLTHVTHSQHFNTISNISHYR 376
           HT ++S  +TR +  H  TH TH    +T +N SH R
Sbjct: 170 HTRNNS-SHTRNNSSHGTTHRTHGTTHHTQNNSSHTR 205


>SB_7863| Best HMM Match : Pentaxin (HMM E-Value=1.8)
          Length = 604

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = -1

Query: 519 VHALNI-TGTI*HTNSHSLRNTRTS*K-HTLTHVTHSQHFNTISNISH 382
           VH+ NI +GT    N ++L +   S   +TL+ + HS + NT+S I H
Sbjct: 308 VHSSNILSGTDHSDNGNNLSSMDHSDNDYTLSGIDHSDNGNTLSGIDH 355


>SB_17488| Best HMM Match : Phi-29_GP3 (HMM E-Value=0.69)
          Length = 250

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 494 LYNTQTHTHFVTRAHHKNTH 435
           +YN + HT   + AHH NTH
Sbjct: 19  IYNNKCHTEKASIAHHLNTH 38


>SB_51102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 357

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -1

Query: 462 NTRTS*KHTLTHVTHSQHFNTISNISHYRFLGRLHGDR 349
           +T  S   TL  VTHS  ++++ ++SH RF G  H  R
Sbjct: 240 HTLVSVSLTLLGVTHSIRYHSLFSVSHTRF-GVTHSSR 276


>SB_7039| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 577

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
 Frame = +2

Query: 257 PSCQWRPSPDPGQ---VRSCPRCPSL 325
           P C+W P+PD G       C  CP L
Sbjct: 161 PDCRWCPAPDCGYAVIATGCASCPKL 186


>SB_33291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1227

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -1

Query: 465 RNTRTS*KHTLTHVTHSQHFNTISNISHYRFLGRLHGDRHSE 340
           R T    ++T+   TH +H NTI   +H+     +    H E
Sbjct: 413 RTTHLEHENTIPRTTHHEHENTIPRTTHHEHENTIPRTTHHE 454


>SB_24577| Best HMM Match : Ribosomal_L44 (HMM E-Value=4.4)
          Length = 196

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 12/68 (17%)
 Frame = -3

Query: 289 RIRRGSPLTRW-----LPTTAGTKS-SLTGNSTEPRDKLISSQSG--PQEYRFDG----R 146
           ++  GSP+TRW     LP T    +   TG+  E   +   SQ G  PQ YR  G    +
Sbjct: 95  KVTTGSPVTRWKVTTGLPVTRWKVTYRATGHKVESYLQGYRSQGGRLPQGYRSQGGRLPQ 154

Query: 145 GYATMAGR 122
           GY +  G+
Sbjct: 155 GYRSQGGK 162


>SB_26497| Best HMM Match : DUF963 (HMM E-Value=0.24)
          Length = 889

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = -3

Query: 307 TAPNLARIRRGSPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMA 128
           T P+L    + + +       +G  SSL GN++ P   L +S + PQ     G  + + A
Sbjct: 528 TDPSLGTASQSASIFGTAVNPSGQLSSLFGNTSHPSTTLTASTNNPQPSTQSGALFGSAA 587


>SB_19328| Best HMM Match : RVT_1 (HMM E-Value=2e-36)
          Length = 295

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +3

Query: 177 DCEEINLSLGSV-ELPVNDDLVPAVVGNHLVNGDPRRILARFGAVPDVHHYIR 332
           D E   LS+ +  +LP++   + + V  H+++    + L  +G + DV H  R
Sbjct: 29  DAESFTLSIKTRGDLPISLTCIASKVLEHIIHSHVMKHLQHYGILTDVQHGFR 81


>SB_13998| Best HMM Match : Kringle (HMM E-Value=0.0016)
          Length = 832

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 202 WVLWSYLSTMTWYQ 243
           WV+ SYL+  TWYQ
Sbjct: 65  WVITSYLTNCTWYQ 78


>SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 824

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -2

Query: 479 THTHFVTR--AHHKNTHSHM*RTHNTSTQFLIFHTTVF*DDYM 357
           THTH  TR   H  +TH+H    H+T    +  H T   D ++
Sbjct: 483 THTHETTRHDTHLYDTHTHETTRHDTHLHDMHTHETTRHDTHL 525


>SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24)
          Length = 429

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
 Frame = +2

Query: 209 CGVTCQR*LG--TSGCRQPSCQWRPSPDPGQVRSCPR--CPSLHTGIRSECRSPC 361
           C VTC   +   T  C   +     S  P  V  C +  CP    G  SEC S C
Sbjct: 15  CSVTCGAGVKRRTVTCTSDNITCNESQKPPHVARCEKGECPRWTAGAWSECSSTC 69


>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1480

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
 Frame = +2

Query: 410  CCECV-----TCVSVCFYDVRVLRSECEFVCYIVPVIFSACTH 523
            C  CV      C+ VCF  V +    C  VC  V    SAC H
Sbjct: 1046 CFSCVHLSVRVCLPVCFSCVHLSVRVCSPVCSRVFTCLSACVH 1088


>SB_16342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -3

Query: 313 SGTAPNLARIRRGSPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQEY 161
           SG+AP     RR   L   + T  G+K S  G+ST+     ++S     E+
Sbjct: 211 SGSAPGSDLFRRRDFLEVDMDTDGGSKGSSVGSSTKGSKASLNSSDNSSEH 261


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,344,243
Number of Sequences: 59808
Number of extensions: 466168
Number of successful extensions: 1489
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1471
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -