BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0659 (600 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_11394| Best HMM Match : GntR (HMM E-Value=7.9) 36 0.025 SB_15990| Best HMM Match : zf-CCCH (HMM E-Value=4.1) 34 0.076 SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011) 34 0.10 SB_44281| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.10 SB_9571| Best HMM Match : Plasmodium_HRP (HMM E-Value=6.2) 34 0.10 SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 31 0.94 SB_2337| Best HMM Match : zf-CCHC (HMM E-Value=0.0064) 31 0.94 SB_44732| Best HMM Match : TSP_1 (HMM E-Value=0) 30 1.2 SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7) 30 1.2 SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6 SB_52148| Best HMM Match : EGF (HMM E-Value=0) 29 2.2 SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2 SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11) 29 2.2 SB_28303| Best HMM Match : DUF1168 (HMM E-Value=1.9) 29 2.2 SB_21375| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2 SB_12396| Best HMM Match : Myc-LZ (HMM E-Value=6.2e-10) 29 2.9 SB_7863| Best HMM Match : Pentaxin (HMM E-Value=1.8) 28 5.0 SB_17488| Best HMM Match : Phi-29_GP3 (HMM E-Value=0.69) 28 5.0 SB_51102| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6 SB_7039| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6 SB_33291| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6 SB_24577| Best HMM Match : Ribosomal_L44 (HMM E-Value=4.4) 28 6.6 SB_26497| Best HMM Match : DUF963 (HMM E-Value=0.24) 27 8.8 SB_19328| Best HMM Match : RVT_1 (HMM E-Value=2e-36) 27 8.8 SB_13998| Best HMM Match : Kringle (HMM E-Value=0.0016) 27 8.8 SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8 SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24) 27 8.8 SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8 SB_16342| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8 >SB_11394| Best HMM Match : GntR (HMM E-Value=7.9) Length = 451 Score = 35.9 bits (79), Expect = 0.025 Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 3/43 (6%) Frame = +2 Query: 410 CCEC-VTCVS--VCFYDVRVLRSECEFVCYIVPVIFSACTHEC 529 CC C V C S V Y RV C VCY V+F +C C Sbjct: 171 CCSCRVVCYSCRVVCYSCRVACCSCRVVCYSCRVVFCSCRVAC 213 >SB_15990| Best HMM Match : zf-CCCH (HMM E-Value=4.1) Length = 236 Score = 34.3 bits (75), Expect = 0.076 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 5/77 (6%) Frame = -1 Query: 558 HITAXNKLITHS*VHALNITGTI*HTNSHSLRNTR---TS*KHTLTHVTHSQHFNTISNI 388 H + ++H+ H L++TG H H+L TR + +HTL HVT T + Sbjct: 115 HTLHVTRYMSHATCHTLHVTGNTSHATCHTLHVTRYMSHATRHTL-HVTRYTSHATCHTL 173 Query: 387 SHYRFLGRL--HGDRHS 343 H + R H RH+ Sbjct: 174 RHTLHVTRYTSHSTRHT 190 Score = 31.5 bits (68), Expect = 0.54 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 3/75 (4%) Frame = -1 Query: 558 HITAXNKLITHS*VHALNITGTI*HTNSHSLRNTR---TS*KHTLTHVTHSQHFNTISNI 388 H+T + ++H+ H L++TG H H+L TR + HTL HVT + T + Sbjct: 90 HVT---RYMSHATCHTLHVTGNTSHATCHTLHVTRYMSHATCHTL-HVTGNTSHATCHTL 145 Query: 387 SHYRFLGRLHGDRHS 343 R++ H RH+ Sbjct: 146 HVTRYMS--HATRHT 158 Score = 28.7 bits (61), Expect = 3.8 Identities = 15/49 (30%), Positives = 22/49 (44%) Frame = -1 Query: 564 LXHITAXNKLITHS*VHALNITGTI*HTNSHSLRNTRTS*KHTLTHVTH 418 L H + +HS H L++T + H + H L TR + H H H Sbjct: 173 LRHTLHVTRYTSHSTRHTLHVTRYMSHASRHMLHVTRYT-SHATRHTLH 220 Score = 27.9 bits (59), Expect = 6.6 Identities = 13/50 (26%), Positives = 24/50 (48%) Frame = -1 Query: 558 HITAXNKLITHS*VHALNITGTI*HTNSHSLRNTRTS*KHTLTHVTHSQH 409 H + ++H+ H L++T H H+LR+T ++T H+ H Sbjct: 143 HTLHVTRYMSHATRHTLHVTRYTSHATCHTLRHTLHVTRYTSHSTRHTLH 192 >SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011) Length = 734 Score = 33.9 bits (74), Expect = 0.10 Identities = 23/41 (56%), Positives = 25/41 (60%), Gaps = 2/41 (4%) Frame = -1 Query: 531 THS*VHALNITGTI*HTNSH--SLRNTRTS*KHTLTHVTHS 415 THS HAL T T+ HT+SH SL TRT TL H THS Sbjct: 263 THSHSHALLFTRTLIHTHSHPHSLLFTRTIIHTTLIH-THS 302 Score = 32.3 bits (70), Expect = 0.31 Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Frame = -1 Query: 531 THS*VHALNITGTI*HTNSHSLRNTRTS*KHTLTHV-THSQHFNTISNISH 382 THS HAL+ T TI HT+SHS + S TL H +HS + S + H Sbjct: 365 THSHPHALSFTRTIIHTHSHS--HHALSFTCTLIHTHSHSLALSFTSTLIH 413 Score = 30.7 bits (66), Expect = 0.94 Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 2/37 (5%) Frame = -1 Query: 531 THS*VHALNITGTI*HTNSHS--LRNTRTS*KHTLTH 427 THS HAL+ T T+ HT+SHS L T + HT +H Sbjct: 332 THSHSHALSFTHTLIHTHSHSHALSFTPRTVIHTHSH 368 Score = 30.3 bits (65), Expect = 1.2 Identities = 22/44 (50%), Positives = 26/44 (59%), Gaps = 2/44 (4%) Frame = -1 Query: 531 THS*VHALNITGTI*HTNSHS--LRNTRTS*KHTLTHVTHSQHF 406 THS H L+ T T+ HT+SHS L TRT HT +H HS F Sbjct: 247 THSPSHTLSFTRTLIHTHSHSHALLFTRTL-IHTHSH-PHSLLF 288 Score = 29.5 bits (63), Expect = 2.2 Identities = 22/46 (47%), Positives = 27/46 (58%) Frame = -1 Query: 531 THS*VHALNITGTI*HTNSHSLRNTRTS*KHTLTHVTHSQHFNTIS 394 THS H+L T TI T+SHS + T HTL H THS H + +S Sbjct: 316 THSHPHSLLFTFTIIRTHSHSHALSFT---HTLIH-THS-HSHALS 356 Score = 27.5 bits (58), Expect = 8.8 Identities = 20/38 (52%), Positives = 24/38 (63%), Gaps = 2/38 (5%) Frame = -1 Query: 534 ITHS*VHALNITGTI*HTN--SHSLRNTRTS*KHTLTH 427 I HS HAL+ T TI HT+ SH+L TRT HT +H Sbjct: 232 IYHS--HALSFTRTIIHTHSPSHTLSFTRTL-IHTHSH 266 >SB_44281| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 292 Score = 33.9 bits (74), Expect = 0.10 Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 12/114 (10%) Frame = -1 Query: 600 IIFLXYXQHXNDLX---HITAXNKLITH-------S*VHALNITGTI*HTNSHSLRNTRT 451 ++F Y +H N + H N + H S H +IT TI T+ +++ NT Sbjct: 134 LVFTQYHKHTNIVSRTHHYNITNTSLQHHEHITTTSRTHHEHIT-TISRTHHYNITNTSL 192 Query: 450 S*KHTLTHV--THSQHFNTISNISHYRFLGRLHGDRHSERIPVCSDGHRGQLRT 295 +T + TH +H TIS HY +H E I S H + T Sbjct: 193 QHHEHITTISRTHHEHITTISRTHHYNITNT--SLQHHEHITTISRTHHEHITT 244 Score = 29.9 bits (64), Expect = 1.6 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%) Frame = -1 Query: 537 LITHS*VHALNITGTI*HTNSHSLRNTRTS*KHTLTHV--THSQHFNTISNISHY 379 + T S H +IT TI T+ +++ NT +T + TH +H TIS HY Sbjct: 198 ITTISRTHHEHIT-TISRTHHYNITNTSLQHHEHITTISRTHHEHITTISRTHHY 251 >SB_9571| Best HMM Match : Plasmodium_HRP (HMM E-Value=6.2) Length = 225 Score = 33.9 bits (74), Expect = 0.10 Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 12/114 (10%) Frame = -1 Query: 600 IIFLXYXQHXNDLX---HITAXNKLITH-------S*VHALNITGTI*HTNSHSLRNTRT 451 ++F Y +H N + H N + H S H +IT TI T+ +++ NT Sbjct: 67 LVFTQYHKHTNIVSRTHHYNITNTSLQHHEHITTTSRTHHEHIT-TISRTHHYNITNTSL 125 Query: 450 S*KHTLTHV--THSQHFNTISNISHYRFLGRLHGDRHSERIPVCSDGHRGQLRT 295 +T + TH +H TIS HY +H E I S H + T Sbjct: 126 QHHEHITTISRTHHEHITTISRTHHYNITNT--SLQHHEHITTISRTHHEHITT 177 Score = 29.9 bits (64), Expect = 1.6 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%) Frame = -1 Query: 537 LITHS*VHALNITGTI*HTNSHSLRNTRTS*KHTLTHV--THSQHFNTISNISHY 379 + T S H +IT TI T+ +++ NT +T + TH +H TIS HY Sbjct: 131 ITTISRTHHEHIT-TISRTHHYNITNTSLQHHEHITTISRTHHEHITTISRTHHY 184 >SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0) Length = 1841 Score = 30.7 bits (66), Expect = 0.94 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Frame = -3 Query: 196 KLISSQSGPQEYRFDGRGYAT-MAGRGYLTPQSNQVLXFFRTYAPNGLI 53 +++ ++ P+ Y FDG YA + + N V+ FRT PNGL+ Sbjct: 749 RILKRETDPEGY-FDGSAYAEYLLNDEKVDSNKNTVMLEFRTIQPNGLL 796 >SB_2337| Best HMM Match : zf-CCHC (HMM E-Value=0.0064) Length = 422 Score = 30.7 bits (66), Expect = 0.94 Identities = 16/44 (36%), Positives = 23/44 (52%) Frame = +2 Query: 290 GQVRSCPRCPSLHTGIRSECRSPCSRPKKR*CEILEIVLKCCEC 421 GQ +SC RC + G++ EC P RP +R E L + +C Sbjct: 198 GQPQSCLRCSEIGHGVK-ECTKPRRRPHRRRREELTTEQERMQC 240 >SB_44732| Best HMM Match : TSP_1 (HMM E-Value=0) Length = 675 Score = 30.3 bits (65), Expect = 1.2 Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 4/55 (7%) Frame = +2 Query: 209 CGVTCQR*--LGTSGCRQPSCQWRPSPDPGQVRSC--PRCPSLHTGIRSECRSPC 361 C VTC L T C + P P + R C P CP G SEC C Sbjct: 222 CSVTCGEGIQLHTVVCSTGNQSQCKKPKPSEARKCQLPACPEWTVGKWSECSRTC 276 >SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7) Length = 540 Score = 30.3 bits (65), Expect = 1.2 Identities = 28/80 (35%), Positives = 36/80 (45%), Gaps = 3/80 (3%) Frame = +2 Query: 302 SCPRCPSLHTGIRSECRSPCSRPKKR*CEILEIVLKCCECV---TCVSVCFYDVRVLRSE 472 SC RC LH G+ S C P + ++ I C CV +S+CF RVL Sbjct: 337 SC-RCV-LHRGLMSMCF-----PSRANVDVFHIACSCL-CVLHRVLMSMCFD--RVLMPM 386 Query: 473 CEFVCYIVPVIFSACTHECV 532 C +C V V AC+ CV Sbjct: 387 CSPLCVHVDVFPIACSCRCV 406 >SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2680 Score = 29.9 bits (64), Expect = 1.6 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = -3 Query: 157 FDGRGYATMAGRGYLTPQSNQVLXFFRTYAPNGLIYLLKAS 35 F G GY G +N++ +FRT P+GLI L S Sbjct: 1339 FPGNGYYKFPGSYVREGTTNEIELWFRTQYPDGLILFLSDS 1379 >SB_52148| Best HMM Match : EGF (HMM E-Value=0) Length = 1055 Score = 29.5 bits (63), Expect = 2.2 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = +1 Query: 49 GISSRSERTCGRRXALD*IEASNNLGQPSWHIHGHRTCTLEGQTARR 189 G + E CG+R D +NN+ Q S IHG+ TL+G R Sbjct: 684 GTNKLYECKCGQRHCGDKSNLTNNVCQFSHCIHGNCMVTLDGHRCAR 730 >SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 204 Score = 29.5 bits (63), Expect = 2.2 Identities = 11/32 (34%), Positives = 21/32 (65%) Frame = +2 Query: 2 RATLLLRCFEYRRLEKVYQAVRSVRAEEXKHL 97 R L +RC++YR+L +++A R R ++ + L Sbjct: 20 RFLLRVRCWQYRQLTAIHRATRPTRPDKARRL 51 >SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11) Length = 129 Score = 29.5 bits (63), Expect = 2.2 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 7/68 (10%) Frame = -1 Query: 564 LXHITAXNKLITHS*VHALNIT------GTI*H-TNSHSLRNTRTS*KHTLTHVTHSQHF 406 L H+T ITHS + L +T T+ H T +HS T TLTH T + Sbjct: 62 LTHLTITYSTITHSTLTHLTLTHLTLTYSTLTHSTLTHSTLTHSTLTHSTLTHSTITHST 121 Query: 405 NTISNISH 382 T SN++H Sbjct: 122 LTHSNLTH 129 >SB_28303| Best HMM Match : DUF1168 (HMM E-Value=1.9) Length = 304 Score = 29.5 bits (63), Expect = 2.2 Identities = 16/58 (27%), Positives = 31/58 (53%) Frame = +3 Query: 204 GSVELPVNDDLVPAVVGNHLVNGDPRRILARFGAVPDVHHYIRVSVLNADHHVVVLKN 377 G V+ P+N D + + N +V+G P + ++R+ VH Y V ++++ L+N Sbjct: 61 GPVQNPINHDTLRGEIRN-VVSGSPSKKISRWRREYRVHFYNEVGKIDSEKLKETLQN 117 >SB_21375| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 90 Score = 29.5 bits (63), Expect = 2.2 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 8/67 (11%) Frame = -1 Query: 585 YXQHXND-LXHITAXNKLITHS*VHALNITGTI*HTNSHSLRNTR--TS*KHTLT----H 427 Y +H + H+T + +TH H TG + H++R T T KH +T H Sbjct: 14 YTRHFTRYMRHVTRYTRHVTHYTRHVTRYTGHVTRYTRHAIRYTNHVTCYKHYITCYTRH 73 Query: 426 VT-HSQH 409 VT H +H Sbjct: 74 VTNHKRH 80 >SB_12396| Best HMM Match : Myc-LZ (HMM E-Value=6.2e-10) Length = 293 Score = 29.1 bits (62), Expect = 2.9 Identities = 15/37 (40%), Positives = 21/37 (56%) Frame = -1 Query: 486 HTNSHSLRNTRTS*KHTLTHVTHSQHFNTISNISHYR 376 HT ++S +TR + H TH TH +T +N SH R Sbjct: 170 HTRNNS-SHTRNNSSHGTTHRTHGTTHHTQNNSSHTR 205 >SB_7863| Best HMM Match : Pentaxin (HMM E-Value=1.8) Length = 604 Score = 28.3 bits (60), Expect = 5.0 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%) Frame = -1 Query: 519 VHALNI-TGTI*HTNSHSLRNTRTS*K-HTLTHVTHSQHFNTISNISH 382 VH+ NI +GT N ++L + S +TL+ + HS + NT+S I H Sbjct: 308 VHSSNILSGTDHSDNGNNLSSMDHSDNDYTLSGIDHSDNGNTLSGIDH 355 >SB_17488| Best HMM Match : Phi-29_GP3 (HMM E-Value=0.69) Length = 250 Score = 28.3 bits (60), Expect = 5.0 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = -2 Query: 494 LYNTQTHTHFVTRAHHKNTH 435 +YN + HT + AHH NTH Sbjct: 19 IYNNKCHTEKASIAHHLNTH 38 >SB_51102| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 357 Score = 27.9 bits (59), Expect = 6.6 Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = -1 Query: 462 NTRTS*KHTLTHVTHSQHFNTISNISHYRFLGRLHGDR 349 +T S TL VTHS ++++ ++SH RF G H R Sbjct: 240 HTLVSVSLTLLGVTHSIRYHSLFSVSHTRF-GVTHSSR 276 >SB_7039| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 577 Score = 27.9 bits (59), Expect = 6.6 Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 3/26 (11%) Frame = +2 Query: 257 PSCQWRPSPDPGQ---VRSCPRCPSL 325 P C+W P+PD G C CP L Sbjct: 161 PDCRWCPAPDCGYAVIATGCASCPKL 186 >SB_33291| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1227 Score = 27.9 bits (59), Expect = 6.6 Identities = 12/42 (28%), Positives = 19/42 (45%) Frame = -1 Query: 465 RNTRTS*KHTLTHVTHSQHFNTISNISHYRFLGRLHGDRHSE 340 R T ++T+ TH +H NTI +H+ + H E Sbjct: 413 RTTHLEHENTIPRTTHHEHENTIPRTTHHEHENTIPRTTHHE 454 >SB_24577| Best HMM Match : Ribosomal_L44 (HMM E-Value=4.4) Length = 196 Score = 27.9 bits (59), Expect = 6.6 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 12/68 (17%) Frame = -3 Query: 289 RIRRGSPLTRW-----LPTTAGTKS-SLTGNSTEPRDKLISSQSG--PQEYRFDG----R 146 ++ GSP+TRW LP T + TG+ E + SQ G PQ YR G + Sbjct: 95 KVTTGSPVTRWKVTTGLPVTRWKVTYRATGHKVESYLQGYRSQGGRLPQGYRSQGGRLPQ 154 Query: 145 GYATMAGR 122 GY + G+ Sbjct: 155 GYRSQGGK 162 >SB_26497| Best HMM Match : DUF963 (HMM E-Value=0.24) Length = 889 Score = 27.5 bits (58), Expect = 8.8 Identities = 16/60 (26%), Positives = 27/60 (45%) Frame = -3 Query: 307 TAPNLARIRRGSPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMA 128 T P+L + + + +G SSL GN++ P L +S + PQ G + + A Sbjct: 528 TDPSLGTASQSASIFGTAVNPSGQLSSLFGNTSHPSTTLTASTNNPQPSTQSGALFGSAA 587 >SB_19328| Best HMM Match : RVT_1 (HMM E-Value=2e-36) Length = 295 Score = 27.5 bits (58), Expect = 8.8 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Frame = +3 Query: 177 DCEEINLSLGSV-ELPVNDDLVPAVVGNHLVNGDPRRILARFGAVPDVHHYIR 332 D E LS+ + +LP++ + + V H+++ + L +G + DV H R Sbjct: 29 DAESFTLSIKTRGDLPISLTCIASKVLEHIIHSHVMKHLQHYGILTDVQHGFR 81 >SB_13998| Best HMM Match : Kringle (HMM E-Value=0.0016) Length = 832 Score = 27.5 bits (58), Expect = 8.8 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = +1 Query: 202 WVLWSYLSTMTWYQ 243 WV+ SYL+ TWYQ Sbjct: 65 WVITSYLTNCTWYQ 78 >SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 824 Score = 27.5 bits (58), Expect = 8.8 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%) Frame = -2 Query: 479 THTHFVTR--AHHKNTHSHM*RTHNTSTQFLIFHTTVF*DDYM 357 THTH TR H +TH+H H+T + H T D ++ Sbjct: 483 THTHETTRHDTHLYDTHTHETTRHDTHLHDMHTHETTRHDTHL 525 >SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24) Length = 429 Score = 27.5 bits (58), Expect = 8.8 Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 4/55 (7%) Frame = +2 Query: 209 CGVTCQR*LG--TSGCRQPSCQWRPSPDPGQVRSCPR--CPSLHTGIRSECRSPC 361 C VTC + T C + S P V C + CP G SEC S C Sbjct: 15 CSVTCGAGVKRRTVTCTSDNITCNESQKPPHVARCEKGECPRWTAGAWSECSSTC 69 >SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1480 Score = 27.5 bits (58), Expect = 8.8 Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 5/43 (11%) Frame = +2 Query: 410 CCECV-----TCVSVCFYDVRVLRSECEFVCYIVPVIFSACTH 523 C CV C+ VCF V + C VC V SAC H Sbjct: 1046 CFSCVHLSVRVCLPVCFSCVHLSVRVCSPVCSRVFTCLSACVH 1088 >SB_16342| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 309 Score = 27.5 bits (58), Expect = 8.8 Identities = 16/51 (31%), Positives = 24/51 (47%) Frame = -3 Query: 313 SGTAPNLARIRRGSPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQEY 161 SG+AP RR L + T G+K S G+ST+ ++S E+ Sbjct: 211 SGSAPGSDLFRRRDFLEVDMDTDGGSKGSSVGSSTKGSKASLNSSDNSSEH 261 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,344,243 Number of Sequences: 59808 Number of extensions: 466168 Number of successful extensions: 1489 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 1183 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1471 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1451595000 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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