Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0659
(600 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9) 36 0.025
SB_15990| Best HMM Match : zf-CCCH (HMM E-Value=4.1) 34 0.076
SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011) 34 0.10
SB_44281| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.10
SB_9571| Best HMM Match : Plasmodium_HRP (HMM E-Value=6.2) 34 0.10
SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 31 0.94
SB_2337| Best HMM Match : zf-CCHC (HMM E-Value=0.0064) 31 0.94
SB_44732| Best HMM Match : TSP_1 (HMM E-Value=0) 30 1.2
SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7) 30 1.2
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_52148| Best HMM Match : EGF (HMM E-Value=0) 29 2.2
SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11) 29 2.2
SB_28303| Best HMM Match : DUF1168 (HMM E-Value=1.9) 29 2.2
SB_21375| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_12396| Best HMM Match : Myc-LZ (HMM E-Value=6.2e-10) 29 2.9
SB_7863| Best HMM Match : Pentaxin (HMM E-Value=1.8) 28 5.0
SB_17488| Best HMM Match : Phi-29_GP3 (HMM E-Value=0.69) 28 5.0
SB_51102| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_7039| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_33291| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_24577| Best HMM Match : Ribosomal_L44 (HMM E-Value=4.4) 28 6.6
SB_26497| Best HMM Match : DUF963 (HMM E-Value=0.24) 27 8.8
SB_19328| Best HMM Match : RVT_1 (HMM E-Value=2e-36) 27 8.8
SB_13998| Best HMM Match : Kringle (HMM E-Value=0.0016) 27 8.8
SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24) 27 8.8
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_16342| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
Length = 451
Score = 35.9 bits (79), Expect = 0.025
Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = +2
Query: 410 CCEC-VTCVS--VCFYDVRVLRSECEFVCYIVPVIFSACTHEC 529
CC C V C S V Y RV C VCY V+F +C C
Sbjct: 171 CCSCRVVCYSCRVVCYSCRVACCSCRVVCYSCRVVFCSCRVAC 213
>SB_15990| Best HMM Match : zf-CCCH (HMM E-Value=4.1)
Length = 236
Score = 34.3 bits (75), Expect = 0.076
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Frame = -1
Query: 558 HITAXNKLITHS*VHALNITGTI*HTNSHSLRNTR---TS*KHTLTHVTHSQHFNTISNI 388
H + ++H+ H L++TG H H+L TR + +HTL HVT T +
Sbjct: 115 HTLHVTRYMSHATCHTLHVTGNTSHATCHTLHVTRYMSHATRHTL-HVTRYTSHATCHTL 173
Query: 387 SHYRFLGRL--HGDRHS 343
H + R H RH+
Sbjct: 174 RHTLHVTRYTSHSTRHT 190
Score = 31.5 bits (68), Expect = 0.54
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Frame = -1
Query: 558 HITAXNKLITHS*VHALNITGTI*HTNSHSLRNTR---TS*KHTLTHVTHSQHFNTISNI 388
H+T + ++H+ H L++TG H H+L TR + HTL HVT + T +
Sbjct: 90 HVT---RYMSHATCHTLHVTGNTSHATCHTLHVTRYMSHATCHTL-HVTGNTSHATCHTL 145
Query: 387 SHYRFLGRLHGDRHS 343
R++ H RH+
Sbjct: 146 HVTRYMS--HATRHT 158
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = -1
Query: 564 LXHITAXNKLITHS*VHALNITGTI*HTNSHSLRNTRTS*KHTLTHVTH 418
L H + +HS H L++T + H + H L TR + H H H
Sbjct: 173 LRHTLHVTRYTSHSTRHTLHVTRYMSHASRHMLHVTRYT-SHATRHTLH 220
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = -1
Query: 558 HITAXNKLITHS*VHALNITGTI*HTNSHSLRNTRTS*KHTLTHVTHSQH 409
H + ++H+ H L++T H H+LR+T ++T H+ H
Sbjct: 143 HTLHVTRYMSHATRHTLHVTRYTSHATCHTLRHTLHVTRYTSHSTRHTLH 192
>SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011)
Length = 734
Score = 33.9 bits (74), Expect = 0.10
Identities = 23/41 (56%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = -1
Query: 531 THS*VHALNITGTI*HTNSH--SLRNTRTS*KHTLTHVTHS 415
THS HAL T T+ HT+SH SL TRT TL H THS
Sbjct: 263 THSHSHALLFTRTLIHTHSHPHSLLFTRTIIHTTLIH-THS 302
Score = 32.3 bits (70), Expect = 0.31
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = -1
Query: 531 THS*VHALNITGTI*HTNSHSLRNTRTS*KHTLTHV-THSQHFNTISNISH 382
THS HAL+ T TI HT+SHS + S TL H +HS + S + H
Sbjct: 365 THSHPHALSFTRTIIHTHSHS--HHALSFTCTLIHTHSHSLALSFTSTLIH 413
Score = 30.7 bits (66), Expect = 0.94
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = -1
Query: 531 THS*VHALNITGTI*HTNSHS--LRNTRTS*KHTLTH 427
THS HAL+ T T+ HT+SHS L T + HT +H
Sbjct: 332 THSHSHALSFTHTLIHTHSHSHALSFTPRTVIHTHSH 368
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/44 (50%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = -1
Query: 531 THS*VHALNITGTI*HTNSHS--LRNTRTS*KHTLTHVTHSQHF 406
THS H L+ T T+ HT+SHS L TRT HT +H HS F
Sbjct: 247 THSPSHTLSFTRTLIHTHSHSHALLFTRTL-IHTHSH-PHSLLF 288
Score = 29.5 bits (63), Expect = 2.2
Identities = 22/46 (47%), Positives = 27/46 (58%)
Frame = -1
Query: 531 THS*VHALNITGTI*HTNSHSLRNTRTS*KHTLTHVTHSQHFNTIS 394
THS H+L T TI T+SHS + T HTL H THS H + +S
Sbjct: 316 THSHPHSLLFTFTIIRTHSHSHALSFT---HTLIH-THS-HSHALS 356
Score = 27.5 bits (58), Expect = 8.8
Identities = 20/38 (52%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = -1
Query: 534 ITHS*VHALNITGTI*HTN--SHSLRNTRTS*KHTLTH 427
I HS HAL+ T TI HT+ SH+L TRT HT +H
Sbjct: 232 IYHS--HALSFTRTIIHTHSPSHTLSFTRTL-IHTHSH 266
>SB_44281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 33.9 bits (74), Expect = 0.10
Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 12/114 (10%)
Frame = -1
Query: 600 IIFLXYXQHXNDLX---HITAXNKLITH-------S*VHALNITGTI*HTNSHSLRNTRT 451
++F Y +H N + H N + H S H +IT TI T+ +++ NT
Sbjct: 134 LVFTQYHKHTNIVSRTHHYNITNTSLQHHEHITTTSRTHHEHIT-TISRTHHYNITNTSL 192
Query: 450 S*KHTLTHV--THSQHFNTISNISHYRFLGRLHGDRHSERIPVCSDGHRGQLRT 295
+T + TH +H TIS HY +H E I S H + T
Sbjct: 193 QHHEHITTISRTHHEHITTISRTHHYNITNT--SLQHHEHITTISRTHHEHITT 244
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = -1
Query: 537 LITHS*VHALNITGTI*HTNSHSLRNTRTS*KHTLTHV--THSQHFNTISNISHY 379
+ T S H +IT TI T+ +++ NT +T + TH +H TIS HY
Sbjct: 198 ITTISRTHHEHIT-TISRTHHYNITNTSLQHHEHITTISRTHHEHITTISRTHHY 251
>SB_9571| Best HMM Match : Plasmodium_HRP (HMM E-Value=6.2)
Length = 225
Score = 33.9 bits (74), Expect = 0.10
Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 12/114 (10%)
Frame = -1
Query: 600 IIFLXYXQHXNDLX---HITAXNKLITH-------S*VHALNITGTI*HTNSHSLRNTRT 451
++F Y +H N + H N + H S H +IT TI T+ +++ NT
Sbjct: 67 LVFTQYHKHTNIVSRTHHYNITNTSLQHHEHITTTSRTHHEHIT-TISRTHHYNITNTSL 125
Query: 450 S*KHTLTHV--THSQHFNTISNISHYRFLGRLHGDRHSERIPVCSDGHRGQLRT 295
+T + TH +H TIS HY +H E I S H + T
Sbjct: 126 QHHEHITTISRTHHEHITTISRTHHYNITNT--SLQHHEHITTISRTHHEHITT 177
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = -1
Query: 537 LITHS*VHALNITGTI*HTNSHSLRNTRTS*KHTLTHV--THSQHFNTISNISHY 379
+ T S H +IT TI T+ +++ NT +T + TH +H TIS HY
Sbjct: 131 ITTISRTHHEHIT-TISRTHHYNITNTSLQHHEHITTISRTHHEHITTISRTHHY 184
>SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 1841
Score = 30.7 bits (66), Expect = 0.94
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3
Query: 196 KLISSQSGPQEYRFDGRGYAT-MAGRGYLTPQSNQVLXFFRTYAPNGLI 53
+++ ++ P+ Y FDG YA + + N V+ FRT PNGL+
Sbjct: 749 RILKRETDPEGY-FDGSAYAEYLLNDEKVDSNKNTVMLEFRTIQPNGLL 796
>SB_2337| Best HMM Match : zf-CCHC (HMM E-Value=0.0064)
Length = 422
Score = 30.7 bits (66), Expect = 0.94
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 290 GQVRSCPRCPSLHTGIRSECRSPCSRPKKR*CEILEIVLKCCEC 421
GQ +SC RC + G++ EC P RP +R E L + +C
Sbjct: 198 GQPQSCLRCSEIGHGVK-ECTKPRRRPHRRRREELTTEQERMQC 240
>SB_44732| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 675
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Frame = +2
Query: 209 CGVTCQR*--LGTSGCRQPSCQWRPSPDPGQVRSC--PRCPSLHTGIRSECRSPC 361
C VTC L T C + P P + R C P CP G SEC C
Sbjct: 222 CSVTCGEGIQLHTVVCSTGNQSQCKKPKPSEARKCQLPACPEWTVGKWSECSRTC 276
>SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7)
Length = 540
Score = 30.3 bits (65), Expect = 1.2
Identities = 28/80 (35%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Frame = +2
Query: 302 SCPRCPSLHTGIRSECRSPCSRPKKR*CEILEIVLKCCECV---TCVSVCFYDVRVLRSE 472
SC RC LH G+ S C P + ++ I C CV +S+CF RVL
Sbjct: 337 SC-RCV-LHRGLMSMCF-----PSRANVDVFHIACSCL-CVLHRVLMSMCFD--RVLMPM 386
Query: 473 CEFVCYIVPVIFSACTHECV 532
C +C V V AC+ CV
Sbjct: 387 CSPLCVHVDVFPIACSCRCV 406
>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2680
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -3
Query: 157 FDGRGYATMAGRGYLTPQSNQVLXFFRTYAPNGLIYLLKAS 35
F G GY G +N++ +FRT P+GLI L S
Sbjct: 1339 FPGNGYYKFPGSYVREGTTNEIELWFRTQYPDGLILFLSDS 1379
>SB_52148| Best HMM Match : EGF (HMM E-Value=0)
Length = 1055
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +1
Query: 49 GISSRSERTCGRRXALD*IEASNNLGQPSWHIHGHRTCTLEGQTARR 189
G + E CG+R D +NN+ Q S IHG+ TL+G R
Sbjct: 684 GTNKLYECKCGQRHCGDKSNLTNNVCQFSHCIHGNCMVTLDGHRCAR 730
>SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +2
Query: 2 RATLLLRCFEYRRLEKVYQAVRSVRAEEXKHL 97
R L +RC++YR+L +++A R R ++ + L
Sbjct: 20 RFLLRVRCWQYRQLTAIHRATRPTRPDKARRL 51
>SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11)
Length = 129
Score = 29.5 bits (63), Expect = 2.2
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Frame = -1
Query: 564 LXHITAXNKLITHS*VHALNIT------GTI*H-TNSHSLRNTRTS*KHTLTHVTHSQHF 406
L H+T ITHS + L +T T+ H T +HS T TLTH T +
Sbjct: 62 LTHLTITYSTITHSTLTHLTLTHLTLTYSTLTHSTLTHSTLTHSTLTHSTLTHSTITHST 121
Query: 405 NTISNISH 382
T SN++H
Sbjct: 122 LTHSNLTH 129
>SB_28303| Best HMM Match : DUF1168 (HMM E-Value=1.9)
Length = 304
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/58 (27%), Positives = 31/58 (53%)
Frame = +3
Query: 204 GSVELPVNDDLVPAVVGNHLVNGDPRRILARFGAVPDVHHYIRVSVLNADHHVVVLKN 377
G V+ P+N D + + N +V+G P + ++R+ VH Y V ++++ L+N
Sbjct: 61 GPVQNPINHDTLRGEIRN-VVSGSPSKKISRWRREYRVHFYNEVGKIDSEKLKETLQN 117
>SB_21375| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 90
Score = 29.5 bits (63), Expect = 2.2
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Frame = -1
Query: 585 YXQHXND-LXHITAXNKLITHS*VHALNITGTI*HTNSHSLRNTR--TS*KHTLT----H 427
Y +H + H+T + +TH H TG + H++R T T KH +T H
Sbjct: 14 YTRHFTRYMRHVTRYTRHVTHYTRHVTRYTGHVTRYTRHAIRYTNHVTCYKHYITCYTRH 73
Query: 426 VT-HSQH 409
VT H +H
Sbjct: 74 VTNHKRH 80
>SB_12396| Best HMM Match : Myc-LZ (HMM E-Value=6.2e-10)
Length = 293
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -1
Query: 486 HTNSHSLRNTRTS*KHTLTHVTHSQHFNTISNISHYR 376
HT ++S +TR + H TH TH +T +N SH R
Sbjct: 170 HTRNNS-SHTRNNSSHGTTHRTHGTTHHTQNNSSHTR 205
>SB_7863| Best HMM Match : Pentaxin (HMM E-Value=1.8)
Length = 604
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = -1
Query: 519 VHALNI-TGTI*HTNSHSLRNTRTS*K-HTLTHVTHSQHFNTISNISH 382
VH+ NI +GT N ++L + S +TL+ + HS + NT+S I H
Sbjct: 308 VHSSNILSGTDHSDNGNNLSSMDHSDNDYTLSGIDHSDNGNTLSGIDH 355
>SB_17488| Best HMM Match : Phi-29_GP3 (HMM E-Value=0.69)
Length = 250
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 494 LYNTQTHTHFVTRAHHKNTH 435
+YN + HT + AHH NTH
Sbjct: 19 IYNNKCHTEKASIAHHLNTH 38
>SB_51102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 357
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -1
Query: 462 NTRTS*KHTLTHVTHSQHFNTISNISHYRFLGRLHGDR 349
+T S TL VTHS ++++ ++SH RF G H R
Sbjct: 240 HTLVSVSLTLLGVTHSIRYHSLFSVSHTRF-GVTHSSR 276
>SB_7039| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 577
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Frame = +2
Query: 257 PSCQWRPSPDPGQ---VRSCPRCPSL 325
P C+W P+PD G C CP L
Sbjct: 161 PDCRWCPAPDCGYAVIATGCASCPKL 186
>SB_33291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1227
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = -1
Query: 465 RNTRTS*KHTLTHVTHSQHFNTISNISHYRFLGRLHGDRHSE 340
R T ++T+ TH +H NTI +H+ + H E
Sbjct: 413 RTTHLEHENTIPRTTHHEHENTIPRTTHHEHENTIPRTTHHE 454
>SB_24577| Best HMM Match : Ribosomal_L44 (HMM E-Value=4.4)
Length = 196
Score = 27.9 bits (59), Expect = 6.6
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 12/68 (17%)
Frame = -3
Query: 289 RIRRGSPLTRW-----LPTTAGTKS-SLTGNSTEPRDKLISSQSG--PQEYRFDG----R 146
++ GSP+TRW LP T + TG+ E + SQ G PQ YR G +
Sbjct: 95 KVTTGSPVTRWKVTTGLPVTRWKVTYRATGHKVESYLQGYRSQGGRLPQGYRSQGGRLPQ 154
Query: 145 GYATMAGR 122
GY + G+
Sbjct: 155 GYRSQGGK 162
>SB_26497| Best HMM Match : DUF963 (HMM E-Value=0.24)
Length = 889
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = -3
Query: 307 TAPNLARIRRGSPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMA 128
T P+L + + + +G SSL GN++ P L +S + PQ G + + A
Sbjct: 528 TDPSLGTASQSASIFGTAVNPSGQLSSLFGNTSHPSTTLTASTNNPQPSTQSGALFGSAA 587
>SB_19328| Best HMM Match : RVT_1 (HMM E-Value=2e-36)
Length = 295
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 177 DCEEINLSLGSV-ELPVNDDLVPAVVGNHLVNGDPRRILARFGAVPDVHHYIR 332
D E LS+ + +LP++ + + V H+++ + L +G + DV H R
Sbjct: 29 DAESFTLSIKTRGDLPISLTCIASKVLEHIIHSHVMKHLQHYGILTDVQHGFR 81
>SB_13998| Best HMM Match : Kringle (HMM E-Value=0.0016)
Length = 832
Score = 27.5 bits (58), Expect = 8.8
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 202 WVLWSYLSTMTWYQ 243
WV+ SYL+ TWYQ
Sbjct: 65 WVITSYLTNCTWYQ 78
>SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 824
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -2
Query: 479 THTHFVTR--AHHKNTHSHM*RTHNTSTQFLIFHTTVF*DDYM 357
THTH TR H +TH+H H+T + H T D ++
Sbjct: 483 THTHETTRHDTHLYDTHTHETTRHDTHLHDMHTHETTRHDTHL 525
>SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24)
Length = 429
Score = 27.5 bits (58), Expect = 8.8
Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Frame = +2
Query: 209 CGVTCQR*LG--TSGCRQPSCQWRPSPDPGQVRSCPR--CPSLHTGIRSECRSPC 361
C VTC + T C + S P V C + CP G SEC S C
Sbjct: 15 CSVTCGAGVKRRTVTCTSDNITCNESQKPPHVARCEKGECPRWTAGAWSECSSTC 69
>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1480
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Frame = +2
Query: 410 CCECV-----TCVSVCFYDVRVLRSECEFVCYIVPVIFSACTH 523
C CV C+ VCF V + C VC V SAC H
Sbjct: 1046 CFSCVHLSVRVCLPVCFSCVHLSVRVCSPVCSRVFTCLSACVH 1088
>SB_16342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 309
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = -3
Query: 313 SGTAPNLARIRRGSPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQEY 161
SG+AP RR L + T G+K S G+ST+ ++S E+
Sbjct: 211 SGSAPGSDLFRRRDFLEVDMDTDGGSKGSSVGSSTKGSKASLNSSDNSSEH 261
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,344,243
Number of Sequences: 59808
Number of extensions: 466168
Number of successful extensions: 1489
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1471
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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