Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0659
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.57 
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   7.0  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    21   9.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 0.57
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 570  NDLXHITAXNKLITHS*VHALNITGTI*HTNSHSLR 463
            N   H T  ++LI H+  H+  IT T   TNS +++
Sbjct: 1350 NTFGHDTVTHQLIVHAPPHSPQITLTATTTNSLTMK 1385


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -1

Query: 312 RGQLRTWPGSGEG 274
           RGQLRT   SGEG
Sbjct: 396 RGQLRTKIESGEG 408


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 6/21 (28%), Positives = 15/21 (71%)
 Frame = +3

Query: 180 CEEINLSLGSVELPVNDDLVP 242
           CE++ +SLG++++ +    +P
Sbjct: 22  CEKVYVSLGALKMHIRTHTLP 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,032
Number of Sequences: 438
Number of extensions: 4071
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)