Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0659
         (600 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein...    33   0.19 
At3g14070.1 68416.m01777 cation exchanger, putative (CAX9) simil...    30   1.3  
At2g16750.1 68415.m01921 protein kinase family protein contains ...    30   1.3  
At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ...    29   2.4  
At3g02890.1 68416.m00284 PHD finger protein-related contains low...    28   5.4  
At1g29160.1 68414.m03568 Dof-type zinc finger domain-containing ...    28   5.4  
At4g36610.1 68417.m05196 hydrolase, alpha/beta fold family prote...    27   7.2  
At2g20750.1 68415.m02439 beta-expansin, putative (EXPB1) identic...    27   7.2  

>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
           contains PF01422: NF-X1 type zinc finger
          Length = 912

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 28/105 (26%), Positives = 41/105 (39%), Gaps = 8/105 (7%)
 Frame = +2

Query: 209 CGVTCQR*LGTSGCRQPS-CQWRPSPDPGQV---RSCPRCPSLHTGIRSECRSPCSRP-- 370
           CG TC + LG    R P  C   P  +  ++   +SC RC      +       C R   
Sbjct: 347 CGGTCDKVLGCGYHRCPERCHRGPCLETCRIVVTKSC-RCGVTKKQVPCHQELACERKCQ 405

Query: 371 KKR*CEILEIVLKCC--ECVTCVSVCFYDVRVLRSECEFVCYIVP 499
           + R C       +CC  EC  C  +C   +R    +C+  C+  P
Sbjct: 406 RVRDCARHACRRRCCDGECPPCSEICGKKLRCRNHKCQSPCHQGP 450


>At3g14070.1 68416.m01777 cation exchanger, putative (CAX9) similar
           to sodium/calcium exchanger protein [Mus musculus]
           gi|13925661|gb|AAK49407; Ca2+:Cation Antiporter (CaCA)
           Family member PMID:11500563
          Length = 643

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 11/51 (21%), Positives = 27/51 (52%)
 Frame = +1

Query: 184 RRSIYPWVLWSYLSTMTWYQRLSATILSMETLAGSWPGSELSPMSITTYGY 336
           RR + PWVL  ++ ++ W+  ++  ++++    G   G   S +++T   +
Sbjct: 473 RRFLIPWVLGGFIMSIVWFYMIANELVALLVTFGEIYGINPSILALTVLAW 523


>At2g16750.1 68415.m01921 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 617

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +2

Query: 392 LEIVLKCCECVTCVSVCFYDVRVLRSECEFVCYIVPVI 505
           LE V K  +CV  V VCF   R L+S+     Y+ P I
Sbjct: 32  LEEVAKHGDCVVVVHVCFTYYRALKSKSSLDRYLKPYI 69


>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
           WD-40 repeats (PF0400);  similar to WD-40 repeat protein
           MSI4 (SP:O22607) [Arabidopsis thaliana]
          Length = 496

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = -2

Query: 491 YNTQTHTHFVTRAHHKNTHSHM*RTHNTSTQFLIFHTTVF*DDYMVIGIQNGYPYVVM 318
           Y T  H   V R      +S +  TH  S   LI++T    D Y V+G  +  P +++
Sbjct: 147 YKTIIHPGEVNRIRELPQNSKIVATHTDSPDILIWNTETQPDRYAVLGAPDSRPDLLL 204


>At3g02890.1 68416.m00284 PHD finger protein-related contains low
           similarity to PHD-finger domain proteins
          Length = 963

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 21/70 (30%), Positives = 31/70 (44%)
 Frame = -1

Query: 486 HTNSHSLRNTRTS*KHTLTHVTHSQHFNTISNISHYRFLGRLHGDRHSERIPVCSDGHRG 307
           H  S    +   S   T +    S+     S+ISH   L R H D+ S ++  C+D H  
Sbjct: 72  HNTSSEASHLVNSNHDTSSENAESKEIIRSSDISHGPLLDRPHKDQDSMKVDSCND-H-- 128

Query: 306 QLRTWPGSGE 277
           Q R+  G G+
Sbjct: 129 QARSTLGQGK 138


>At1g29160.1 68414.m03568 Dof-type zinc finger domain-containing
           protein similar to ascorbate oxidase promoter-binding
           protein GB:D45066 GI:853689 from [Cucurbita maxima]
          Length = 175

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +2

Query: 239 TSGCRQPSCQWRPSPDPGQVRSCPRCPSLHT 331
           T+  R PS        P ++  CPRC S+ T
Sbjct: 42  TTAVRSPSSDLTAEKRPDKIIPCPRCKSMET 72


>At4g36610.1 68417.m05196 hydrolase, alpha/beta fold family protein
           low similarity to
           2-hydroxy-6-oxo-7-methylocta-2,4-dienoate hydrolase
           [Pseudomonas fluorescens] GI:1871461; contains Pfam
           profile PF00561: hydrolase, alpha/beta fold family
          Length = 317

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3

Query: 313 SGTAPNLARIRRGSPLTRWLPTTAGTKSSLTGNSTEP 203
           +G  P    I  G+ +  W+P     K+S TG  T+P
Sbjct: 19  AGVVPYTLEIEPGTKINFWVPKETLKKNSGTGKPTKP 55


>At2g20750.1 68415.m02439 beta-expansin, putative (EXPB1) identical
           to beta-expansin [Arabidopsis thaliana]
           gi|2224913|gb|AAB61709; similar to SP:O04701 major
           pollen allergen, Bermuda grass [Cynodon dactylon];
           beta-expansin gene family, PMID:11641069
          Length = 271

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -3

Query: 313 SGTAPNLARIRRGSPLTRWLPTTAGTKSSLTGNST 209
           SG+ P L    +    TRWLP TA    S  G+ +
Sbjct: 22  SGSTPPLTHSNQQVAATRWLPATATWYGSAEGDGS 56


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,934,919
Number of Sequences: 28952
Number of extensions: 294881
Number of successful extensions: 821
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)