Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0658
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           24   1.4  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   1.8  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       23   3.2  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   7.3  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 241 RVHHNPGNRSNSQW 282
           R H+N GN SN+ W
Sbjct: 375 RWHNNNGNNSNNHW 388


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = -1

Query: 130 IGHSTHCTRSTEQHSTRSVARGSPSQRQAAHV 35
           I   TH   +T  H+TR   R +P+  +   +
Sbjct: 274 IQRRTHTRHTTTSHNTRGTPRTTPASSRCGQL 305


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 467 IVKENNPREPTRSNACVQAT 526
           ++  NNPR+P R+ +   +T
Sbjct: 50  VIYHNNPRDPNRARSVSYST 69


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 507 FDLVGSLGLFSLTI 466
           FD VGSLG+F + +
Sbjct: 184 FDQVGSLGMFHVNM 197


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,048
Number of Sequences: 336
Number of extensions: 2963
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)