Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0658
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    29   0.85 
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    27   3.4  
SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces pom...    26   6.0  
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    25   7.9  

>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +3

Query: 516 YKQQDLKMDHLGFGLSPXSATSYRTCPFEDXALFISPFCHLTPLV--SYLYKVER 674
           + +   +M   GF ++  S  +   CP  D ALF S    LT  +  S+ YK+ R
Sbjct: 793 FNESKKRMPFFGFSVNMRSLDTLLACPKIDEALFNSTSVELTKHMGKSFFYKILR 847


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/57 (26%), Positives = 30/57 (52%)
 Frame = +3

Query: 420 LRAYCEQTKK*IQYI**SKKIIRESPRDQMLVYKQQDLKMDHLGFGLSPXSATSYRT 590
           + A C++T + +Q++  +  + R+   D +L+  Q D+K+   GF     S  + RT
Sbjct: 482 IAAICKETLEGLQHLHENGIVHRDIKSDNILLSLQGDIKLTDFGFCAQIDSNMTKRT 538


>SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 177

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 244 VHHNPGNRSNSQWVNRAIGLKRNSIFYKLNII 339
           V++NP  +SN  W+   I   R+SIF+ L  +
Sbjct: 10  VNNNPELKSNFPWLADRIHEGRSSIFHALGYV 41


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 570 SATSYRTCPFEDXALFISPFCHLTPLV 650
           S TSY+  PF   +L + PF H   LV
Sbjct: 33  STTSYKQLPFNYCSLSLQPFNHPCCLV 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,571,518
Number of Sequences: 5004
Number of extensions: 47482
Number of successful extensions: 95
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)