BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0658 (700 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 08_01_0779 - 7553278-7553631,7553765-7553977,7554132-7554617,755... 29 4.7 >08_01_0779 - 7553278-7553631,7553765-7553977,7554132-7554617, 7554729-7554796,7554918-7555215,7555288-7555364, 7555703-7555874,7555951-7556021,7557371-7557392 Length = 586 Score = 28.7 bits (61), Expect = 4.7 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 6/59 (10%) Frame = +2 Query: 467 IVKENNPREPTRSNACVQATGSK------DGSSGLRSVAGXSDIIPYLSL*GXSPFYQP 625 IV ENN + + +T K G+S +S G + +L G PFYQP Sbjct: 17 IVGENNASKSAAKEQILSSTNEKMTTSVPQGASSSKSPKGAQEKASFLGKGGEQPFYQP 75 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,888,642 Number of Sequences: 37544 Number of extensions: 317800 Number of successful extensions: 749 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 731 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 749 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1792053856 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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