Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0658
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0779 - 7553278-7553631,7553765-7553977,7554132-7554617,755...    29   4.7  

>08_01_0779 -
           7553278-7553631,7553765-7553977,7554132-7554617,
           7554729-7554796,7554918-7555215,7555288-7555364,
           7555703-7555874,7555951-7556021,7557371-7557392
          Length = 586

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
 Frame = +2

Query: 467 IVKENNPREPTRSNACVQATGSK------DGSSGLRSVAGXSDIIPYLSL*GXSPFYQP 625
           IV ENN  +       + +T  K       G+S  +S  G  +   +L   G  PFYQP
Sbjct: 17  IVGENNASKSAAKEQILSSTNEKMTTSVPQGASSSKSPKGAQEKASFLGKGGEQPFYQP 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,888,642
Number of Sequences: 37544
Number of extensions: 317800
Number of successful extensions: 749
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)