Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0658
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20271| Best HMM Match : UME (HMM E-Value=8.1)                       29   2.7  
SB_1983| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.4  
SB_16712| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_20271| Best HMM Match : UME (HMM E-Value=8.1)
          Length = 335

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -2

Query: 579 MSLXPATDRSPDDPSLDPVACTQAFDLVGSLGLFSLTIKCIVFIFLFVHNKL 424
           ++L   TDR  D  S  P  C  +FD     G+  LT   ++F  ++  N L
Sbjct: 234 VTLATKTDRGADHSSARPCTCIDSFDSYAQ-GVLHLTTYRVLFTGVYARNYL 284


>SB_1983| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 235 GIRVHHNPGNRSNSQWVNRAIGLKRNSIFYKLNIISKYINI 357
           G+ VHHN   R+NS +VN  +    +   YK    SKY  +
Sbjct: 89  GLFVHHNGIRRNNSDYVNAGMEAFASRFHYKR--ASKYAEV 127


>SB_16712| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 529

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 544 IWASVCRRXQRHHTVPVPLRTEPFLS 621
           +W  VC+   RH ++PVPLR   +L+
Sbjct: 412 VWHPVCQ--YRHRSIPVPLRHPQYLT 435


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,976,380
Number of Sequences: 59808
Number of extensions: 377509
Number of successful extensions: 1057
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)