Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0658
(700 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 24 1.2
EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein. 24 1.6
EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein. 24 1.6
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 24 1.6
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 23 2.8
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 23 2.8
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 23 2.8
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 23 3.7
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 22 4.9
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 22 4.9
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 22 6.4
AF498306-5|AAM19330.1| 456|Apis mellifera dopamine receptor typ... 22 6.4
DQ435328-1|ABD92643.1| 143|Apis mellifera OBP11 protein. 21 8.5
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 24.2 bits (50), Expect = 1.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 295 IGLKRNSIFYKLNIISKYINI*SLLIKVF 381
I L+R ++FY +N+I + I L + VF
Sbjct: 230 ITLRRKTLFYTVNLIIPCVGISFLSVLVF 258
>EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein.
Length = 686
Score = 23.8 bits (49), Expect = 1.6
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 280 WVNRAIGLKRNSIFYKLNIISKY 348
W + + L RN+IF LN KY
Sbjct: 84 WYKQGMFLSRNAIFTPLNSEQKY 106
>EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein.
Length = 686
Score = 23.8 bits (49), Expect = 1.6
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 280 WVNRAIGLKRNSIFYKLNIISKY 348
W + + L RN+IF LN KY
Sbjct: 84 WYKQGMFLSRNAIFTPLNSEQKY 106
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 23.8 bits (49), Expect = 1.6
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 295 IGLKRNSIFYKLNIISKYINI*SLLIKVF 381
I ++R ++FY +N+I + I L + VF
Sbjct: 243 ITMRRKTLFYTVNLIIPCVGITFLTVLVF 271
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 23.0 bits (47), Expect = 2.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 63 DPRATDRVECCSVDLVQCVLC 125
D R+T+R+ SV+L+ +LC
Sbjct: 277 DSRSTERMIAASVNLICHILC 297
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 23.0 bits (47), Expect = 2.8
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 295 IGLKRNSIFYKLNIISKYINI*SLLIKVF 381
I ++R ++FY +N+I + I L + VF
Sbjct: 234 ITMRRKTLFYTVNLIIPCMGISFLTVLVF 262
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 23.0 bits (47), Expect = 2.8
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 295 IGLKRNSIFYKLNIISKYINI*SLLIKVF 381
I L+R ++FY +N+I ++I L + F
Sbjct: 229 ITLRRKTLFYTVNLIVPCVSISYLSVLAF 257
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 295 IGLKRNSIFYKLNIISKYINI*SLLIKVF 381
I L+R +FY N+I I I S+ + VF
Sbjct: 207 IRLRRRPMFYVFNLILPCILINSVALLVF 235
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.2 bits (45), Expect = 4.9
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 295 IGLKRNSIFYKLNIISKYINI*SLLIKVF 381
I ++R ++FY +NII + I L + F
Sbjct: 238 ITMRRKTLFYTVNIIIPCMGISFLTVLTF 266
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.2 bits (45), Expect = 4.9
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 295 IGLKRNSIFYKLNIISKYINI*SLLIKVF 381
I ++R ++FY +NII + I L + F
Sbjct: 238 ITMRRKTLFYTVNIIIPCMGISFLTVLTF 266
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 21.8 bits (44), Expect = 6.4
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +1
Query: 301 LKRNSIFYKLNIISKYINI*SLLIKVF 381
++R ++FY +N+I + I L + VF
Sbjct: 229 IRRKTLFYTVNLILPTVLISFLCVLVF 255
>AF498306-5|AAM19330.1| 456|Apis mellifera dopamine receptor type
D2 protein.
Length = 456
Score = 21.8 bits (44), Expect = 6.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 433 VNKQKNKYNTFNSQRK*SERAHEIKCLCT 519
+NKQ + N F+ RK ++ A E K T
Sbjct: 308 INKQHTRGNNFSLSRKLAKFAKEKKAAKT 336
>DQ435328-1|ABD92643.1| 143|Apis mellifera OBP11 protein.
Length = 143
Score = 21.4 bits (43), Expect = 8.5
Identities = 6/11 (54%), Positives = 11/11 (100%)
Frame = +1
Query: 625 LFVISLHWYLI 657
++++SL+WYLI
Sbjct: 6 IWLVSLYWYLI 16
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,546
Number of Sequences: 438
Number of extensions: 3364
Number of successful extensions: 17
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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