Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0657
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 272 2e-74
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 272 3e-74
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 272 3e-74
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 158 6e-40
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 151 7e-38
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 89 6e-19
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 57 3e-09
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 48 1e-06
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 48 2e-06
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 42 1e-04
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 42 1e-04
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 33 0.004
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 33 0.030
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 33 0.052
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 30 0.37
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 29 0.48
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 29 0.64
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 29 0.85
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz... 27 2.6
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 27 3.4
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 27 3.4
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 26 6.0
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 25 7.9
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 272 bits (668), Expect = 2e-74
Identities = 126/141 (89%), Positives = 133/141 (94%)
Frame = +1
Query: 19 RXKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 198
+ K HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLDK
Sbjct: 3 KEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDK 62
Query: 199 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVXAGTGE 378
LKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTS ADCAVLI+ GTGE
Sbjct: 63 LKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGE 122
Query: 379 FEAGISKNGQTREHALLAFTL 441
FEAGISK+GQTREHALLA+TL
Sbjct: 123 FEAGISKDGQTREHALLAYTL 143
Score = 60.5 bits (140), Expect = 2e-10
Identities = 21/36 (58%), Positives = 28/36 (77%)
Frame = +3
Query: 549 RKXGYNPSAVAFVPISGWHGXNMLEPSTKMPWFXGW 656
+K G+NP V FVP+SG+ G NM+EP+T MPW+ GW
Sbjct: 177 KKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGW 212
Score = 46.4 bits (105), Expect = 4e-06
Identities = 24/42 (57%), Positives = 29/42 (69%)
Frame = +2
Query: 443 GVKQLIVGVNKMDSTEPPYXEPRFEEIXKEVSSYXKKDXLQP 568
GVKQLIV VNKMD+T + + RFEEI KE S++ KK P
Sbjct: 144 GVKQLIVAVNKMDTT--GWSQARFEEIVKETSNFIKKVGFNP 183
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 272 bits (667), Expect = 3e-74
Identities = 125/141 (88%), Positives = 133/141 (94%)
Frame = +1
Query: 19 RXKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 198
+ K HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLDK
Sbjct: 3 KEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDK 62
Query: 199 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVXAGTGE 378
LKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTS ADCA+LI+ GTGE
Sbjct: 63 LKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGE 122
Query: 379 FEAGISKNGQTREHALLAFTL 441
FEAGISK+GQTREHALLA+TL
Sbjct: 123 FEAGISKDGQTREHALLAYTL 143
Score = 60.5 bits (140), Expect = 2e-10
Identities = 21/36 (58%), Positives = 28/36 (77%)
Frame = +3
Query: 549 RKXGYNPSAVAFVPISGWHGXNMLEPSTKMPWFXGW 656
+K G+NP V FVP+SG+ G NM+EP+T MPW+ GW
Sbjct: 177 KKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGW 212
Score = 46.4 bits (105), Expect = 4e-06
Identities = 24/42 (57%), Positives = 29/42 (69%)
Frame = +2
Query: 443 GVKQLIVGVNKMDSTEPPYXEPRFEEIXKEVSSYXKKDXLQP 568
GVKQLIV VNKMD+T + + RFEEI KE S++ KK P
Sbjct: 144 GVKQLIVAVNKMDTT--GWSQARFEEIVKETSNFIKKVGFNP 183
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 272 bits (667), Expect = 3e-74
Identities = 125/141 (88%), Positives = 133/141 (94%)
Frame = +1
Query: 19 RXKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 198
+ K HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLDK
Sbjct: 3 KEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDK 62
Query: 199 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVXAGTGE 378
LKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTS ADCA+LI+ GTGE
Sbjct: 63 LKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGE 122
Query: 379 FEAGISKNGQTREHALLAFTL 441
FEAGISK+GQTREHALLA+TL
Sbjct: 123 FEAGISKDGQTREHALLAYTL 143
Score = 60.5 bits (140), Expect = 2e-10
Identities = 21/36 (58%), Positives = 28/36 (77%)
Frame = +3
Query: 549 RKXGYNPSAVAFVPISGWHGXNMLEPSTKMPWFXGW 656
+K G+NP V FVP+SG+ G NM+EP+T MPW+ GW
Sbjct: 177 KKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGW 212
Score = 46.4 bits (105), Expect = 4e-06
Identities = 24/42 (57%), Positives = 29/42 (69%)
Frame = +2
Query: 443 GVKQLIVGVNKMDSTEPPYXEPRFEEIXKEVSSYXKKDXLQP 568
GVKQLIV VNKMD+T + + RFEEI KE S++ KK P
Sbjct: 144 GVKQLIVAVNKMDTT--GWSQARFEEIVKETSNFIKKVGFNP 183
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 158 bits (384), Expect = 6e-40
Identities = 71/138 (51%), Positives = 97/138 (70%)
Frame = +1
Query: 25 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 204
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 205 AERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVXAGTGEFE 384
ERE+G T+++ FET +++DAPGH+ ++ NMI G S AD VL++ A GEFE
Sbjct: 296 EEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFE 355
Query: 385 AGISKNGQTREHALLAFT 438
AG + GQTREHA+LA T
Sbjct: 356 AGFERGGQTREHAVLART 373
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 151 bits (367), Expect = 7e-38
Identities = 71/135 (52%), Positives = 91/135 (67%)
Frame = +1
Query: 25 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 204
K +++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Query: 205 AERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVXAGTGEFE 384
ER RG+T+D+A FE+ K I DAPGHRDFI MI G S AD AVL+V + FE
Sbjct: 235 EERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFE 294
Query: 385 AGISKNGQTREHALL 429
G +NGQTREHA L
Sbjct: 295 RGFLENGQTREHAYL 309
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 89.0 bits (211), Expect = 6e-19
Identities = 56/140 (40%), Positives = 75/140 (53%)
Frame = +1
Query: 13 WARXKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 192
+ R K H+NI IGHVD GK+T T I KC ++G+ SF +
Sbjct: 47 FVRKKPHVNIGTIGHVDHGKTTLTA-AITKC--------------LSDLGQASFMDYSQI 91
Query: 193 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVXAGT 372
DK E+ RGITI A ++ET+ + +D PGH D+IKNMITG + D A+++V A
Sbjct: 92 DKAPEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATD 151
Query: 373 GEFEAGISKNGQTREHALLA 432
G+ QTREH LLA
Sbjct: 152 GQMP-------QTREHLLLA 164
Score = 29.9 bits (64), Expect = 0.37
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 443 GVKQLIVGVNKMDSTEPPYXEPRFEEIXKEVSSY 544
GVKQ++V +NK+D EP E E+ + +S Y
Sbjct: 168 GVKQIVVYINKVDMVEPDMIELVEMEMRELLSEY 201
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 56.8 bits (131), Expect = 3e-09
Identities = 37/113 (32%), Positives = 53/113 (46%)
Frame = +1
Query: 37 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 216
N+ +I H+D+GK+T T ++Y G F + G V+D L AER+
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG---------FTSHFGNVDTGDT----VMDYLPAERQ 76
Query: 217 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVXAGTG 375
RGITI+ A F + +ID PGH DF + + D AV I+ G
Sbjct: 77 RGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAG 129
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 48.4 bits (110), Expect = 1e-06
Identities = 48/153 (31%), Positives = 69/153 (45%), Gaps = 19/153 (12%)
Frame = +1
Query: 19 RXKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 198
R K NI + H+DSGK+T T ++Y G I K+ E+ +G +D
Sbjct: 55 RLKQIRNIGISAHIDSGKTTFTERVLYYTGRI---------KDIHEV-RGKDNVGAKMDF 104
Query: 199 LKAERERGITIDIA----LWK---------------FETSKYYVTIIDAPGHRDFIKNMI 321
++ ERE+GITI A W+ FE S Y + IID PGH DF +
Sbjct: 105 MELEREKGITIQSAATHCTWERTVDQIEANEKQKTDFEKS-YNINIIDTPGHIDFTIEVE 163
Query: 322 TGTSHADCAVLIVXAGTGEFEAGISKNGQTREH 420
D AVL++ A +G I+ + Q R +
Sbjct: 164 RALRVLDGAVLVLCAVSGVQSQTITVDRQMRRY 196
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 47.6 bits (108), Expect = 2e-06
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Frame = +1
Query: 37 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 216
N VI H+D GKST + ++ G I++ + F LDKL+ ER
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINEHNF-----------RNQF-----LDKLEVERR 103
Query: 217 RGITIDIA----LWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVXAGTG 375
RGIT+ ++ + Y + +ID PGH DF ++ + + +L+V A G
Sbjct: 104 RGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 41.5 bits (93), Expect = 1e-04
Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 3/111 (2%)
Frame = +1
Query: 37 NIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAQEMGKGSFKYAWVLDKLKA 207
N+ VI HVD GKST T L+ K G I K +F + A E +G + + L A
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKSTAI-SLFA 79
Query: 208 ERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIV 360
E D+ + + + V +ID+PGH DF + D A+++V
Sbjct: 80 EMTDDDMKDMK-EPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 41.5 bits (93), Expect = 1e-04
Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 3/111 (2%)
Frame = +1
Query: 37 NIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAQEMGKGSFKYAWVLDKLKA 207
N+ VI HVD GKST T L+ K G I K +F + A E +G + + L A
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKSTAI-SLFA 79
Query: 208 ERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIV 360
E D+ + + + V +ID+PGH DF + D A+++V
Sbjct: 80 EMTDDDMKDMK-EPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 33.1 bits (72), Expect(2) = 0.004
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Frame = +1
Query: 160 GKGSFKYAWVLDKLKAERERGITIDIALWK--FETSKYYVTIIDAPGHRDFIKNMITGTS 333
GK + A+ + + GIT I + F+ ++T +D PGH F G +
Sbjct: 183 GKTTLLDAFRKSTIASTEHGGITQKIGAFTVPFDKGSKFITFLDTPGHMAFEAMRKRGAN 242
Query: 334 HADCAVLIVXAGTG 375
AD VL+V G
Sbjct: 243 IADIVVLVVAGDDG 256
Score = 22.2 bits (45), Expect(2) = 0.004
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +1
Query: 40 IVVIGHVDSGKST 78
+ ++GHVD GK+T
Sbjct: 174 VTLMGHVDHGKTT 186
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 33.5 bits (73), Expect = 0.030
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 3/116 (2%)
Frame = +1
Query: 37 NIVVIGHVDSGKSTTTGHLIYKCGGIDKR---TIEKFEKEAQEMGKGSFKYAWVLDKLKA 207
N ++ HVD GK+T L+ G I + T+ + E+ +G + K A
Sbjct: 21 NFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITRG------ITMKSSA 74
Query: 208 ERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVXAGTG 375
I K Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 75 ISLFFKVISQNDEKRVEKDYLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 32.7 bits (71), Expect = 0.052
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
Frame = +1
Query: 46 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA--QEMGKGSFKYAWVLDKLKAERER 219
++GHVD+GK+ +L + +++ E Q++G F + K K ++
Sbjct: 489 ILGHVDTGKTKLLDNL-------RRSNVQEGEAGGITQQIGATYFPIESIKQKTKVVNKK 541
Query: 220 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIV 360
G K + + + IID PGH F GTS + A+L++
Sbjct: 542 G--------KLQYNIPGLLIIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 29.9 bits (64), Expect = 0.37
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +1
Query: 193 DKLKAER-ERGITIDIALWKFETSKYYV--TIIDAPGHRDFIKN 315
+K++A+ E+ + I+I + E +++ T+ID PG DFI N
Sbjct: 60 EKVRAKHAEKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 29.5 bits (63), Expect = 0.48
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -3
Query: 230 IVIPRSRSAFSLSNTQAYLKDPLPISWASFSNFSMVRLSIPPH 102
I IP+ A S+ N++ + +D LP + S V+L +P H
Sbjct: 171 IPIPKKNPARSVCNSKLFNEDTLPAEFEEVSISPPVKLELPTH 213
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 29.1 bits (62), Expect = 0.64
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 268 YVTIIDAPGHRDFIKNMITGTSHADCAVLIV 360
+V+ +D PGH + M+ G + D A+L++
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLI 139
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 28.7 bits (61), Expect = 0.85
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 5/113 (4%)
Frame = +1
Query: 37 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 216
+ +V GH+ GKS L+Y + + + S +Y D ERE
Sbjct: 142 SFIVAGHLHHGKSALLDLLVYYT-----------HPDTKPPKRRSLRYT---DTHYLERE 187
Query: 217 RGITID-----IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIV 360
R ++I +A+ + + ID PGH DF+ + + +D VL+V
Sbjct: 188 RVMSIKSTPLTLAVSDMKGKTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 451
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +1
Query: 253 ETSKYYVTIIDAPGHRDFIKNMIT-GTSHADCAVLIVXAGTGEFEAGISKNG 405
E S + I P + ++++ T G+ H DC + A F AGI +G
Sbjct: 319 EFSDLILAIKTVPSLQSAMQHINTHGSKHTDCIITSSEAAANRFMAGIDASG 370
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 26.6 bits (56), Expect = 3.4
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -3
Query: 254 SNFQRAISIVIPRSRSAFSLSNTQAYLKDPLPISWASFSNFSMV 123
S F IS+ +P FSL+ ++ K LPI W S + S V
Sbjct: 403 STFGVNISVGVPTGSITFSLNWSRLGQKISLPIMWCSVFDRSAV 446
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 26.6 bits (56), Expect = 3.4
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -2
Query: 603 AIQKWARKRQQMGCSXSFXMYEDTSXLISSNLGSLYGGSVESILFTPTMSCL 448
+I K A++RQ + CS S T + L S+ G +ESI SCL
Sbjct: 965 SIYKIAKERQDIQCSASIASAMVTYDKLPKKLNSIIKGIMESIK-KEQFSCL 1015
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -1
Query: 220 HAHAQPLVCPIPKHI*RILYPFPGPPSRTSRWY 122
H+H PL P+P +L P P P S WY
Sbjct: 135 HSHHPPLHNPLPVSCQPVLRP-PPVPQVPSHWY 166
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -1
Query: 199 VCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSSDQWWWT 71
V +PK I I++ F P S S C+Y S D W T
Sbjct: 31 VLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRT 73
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,754,275
Number of Sequences: 5004
Number of extensions: 54446
Number of successful extensions: 185
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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