Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0657
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                126   1e-29
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)          123   2e-28
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                92   3e-19
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)              92   3e-19
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     52   6e-07
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.014
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    37   0.014
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.024
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)                  36   0.024
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)              34   0.13 
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               30   2.1  
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              29   2.7  
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)                      29   4.8  
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              29   4.8  
SB_32303| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score =  126 bits (305), Expect = 1e-29
 Identities = 57/59 (96%), Positives = 58/59 (98%)
 Frame = +1

Query: 157 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 333
           MGKGSFKYAWVLDKLKAERERGITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTS
Sbjct: 1   MGKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTS 59


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score =  123 bits (296), Expect = 2e-28
 Identities = 52/114 (45%), Positives = 79/114 (69%)
 Frame = +1

Query: 97  YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVT 276
           Y  G +DKRT+EK+E+EA+E  + ++  +W LD  + ER++G T+++    F+T   + T
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFT 225

Query: 277 IIDAPGHRDFIKNMITGTSHADCAVLIVXAGTGEFEAGISKNGQTREHALLAFT 438
           ++DAPGH+ F+ NMI+G + AD  VL++ A  GEFE G  + GQTREHA+LA T
Sbjct: 226 LLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAMLAKT 279



 Score = 37.5 bits (83), Expect = 0.010
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = +2

Query: 443 GVKQLIVGVNKMDSTEPPYXEPRFEEIXKEVSSYXKKDXLQP 568
           GVK L++ VNKMD     + E R+EEI  +++ + KK    P
Sbjct: 281 GVKHLVILVNKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 92.3 bits (219), Expect = 3e-19
 Identities = 41/47 (87%), Positives = 44/47 (93%)
 Frame = +1

Query: 19  RXKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 159
           + K HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 3   KEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score = 92.3 bits (219), Expect = 3e-19
 Identities = 40/71 (56%), Positives = 53/71 (74%)
 Frame = +1

Query: 229 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVXAGTGEFEAGISKNGQ 408
           +D+ L +F+T    +T++DAPGH+DFI NMITG + AD A+L+V A TGEFEAG    GQ
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60

Query: 409 TREHALLAFTL 441
           TREHA+L  +L
Sbjct: 61  TREHAILVRSL 71


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 29/110 (26%), Positives = 52/110 (47%)
 Frame = +1

Query: 46  VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGI 225
           +I H D+GK+T T  L+   G I         +EA  +     K     D ++ ER+RGI
Sbjct: 15  IISHPDAGKTTLTEKLLLFGGAI---------QEAGAVKSNKIKKGATSDFMEIERQRGI 65

Query: 226 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVXAGTG 375
           ++  ++  F      + I+D PGH+DF ++     +  D  ++++    G
Sbjct: 66  SVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 37.1 bits (82), Expect = 0.014
 Identities = 36/122 (29%), Positives = 51/122 (41%), Gaps = 6/122 (4%)
 Frame = +1

Query: 28  THINIVVIGHVDSGKSTTTGHLIYK--CGGIDKRTIEKFE--KEAQEMGKGSFKYAWVLD 195
           T I + V+G+V+SGKST  G L Y     G  +  +  F    E Q     S  +  +  
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTYDELDNGQGRARLNLFRHLHEIQSGRTSSISHEILGF 170

Query: 196 KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITG-TSHA-DCAVLIVXAG 369
               E         A    E S   +T ID  GH  ++K  I G T H+ D A+L++   
Sbjct: 171 SCTGEVVNYSDGRSAEDVCEQSSKLITFIDLAGHHKYMKTTIFGLTGHSPDYAMLVIAGN 230

Query: 370 TG 375
            G
Sbjct: 231 AG 232


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 37.1 bits (82), Expect = 0.014
 Identities = 37/107 (34%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
 Frame = +1

Query: 37  NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 216
           N+ VI HVD GKST T  L+ K G I           A + G+  F      D  K E++
Sbjct: 20  NMSVIAHVDHGKSTLTDSLVSKAGII----------AAAKAGETRF-----TDTRKDEQD 64

Query: 217 RGITID---IALWKF--ETSKYYVTIIDAPGHRDFIKNMITGTSHAD 342
           R ITI    I+L+    E+   Y+T    P  R F+ N+I    H D
Sbjct: 65  RCITIKSTAISLYYELPESDFEYITQPKDPKERGFLINLIDSPGHVD 111


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 36.3 bits (80), Expect = 0.024
 Identities = 25/65 (38%), Positives = 31/65 (47%)
 Frame = +1

Query: 37   NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 216
            N  ++ HVD GKST    L+   G I K +  K                 VLDKL+ ERE
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986

Query: 217  RGITI 231
            RGIT+
Sbjct: 1987 RGITV 1991


>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
          Length = 347

 Score = 36.3 bits (80), Expect = 0.024
 Identities = 36/119 (30%), Positives = 54/119 (45%), Gaps = 11/119 (9%)
 Frame = +1

Query: 34  INIVVIGHVDSGKST-----TTGHLIYKCGGIDKRTI-EKFEKEA---QEMGKGSFKYAW 186
           + + V+G+VD+GKST     T G L    G   +R    K E E+     +G     +  
Sbjct: 230 VRVAVVGNVDAGKSTLLGVLTHGELDNGRGTARQRLFRHKHEMESGRTSSVGNDILGFDN 289

Query: 187 VLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITG-TSHA-DCAVLI 357
               +    + G  +D A    E+SK  +T ID  GH  ++K  I G T H  D A+L+
Sbjct: 290 TGQVVNKAEQHGANVDWAKICKESSK-VITFIDLAGHERYLKTTIFGMTGHVPDFAMLM 347


>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
          Length = 203

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 2/130 (1%)
 Frame = +1

Query: 31  HINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 204
           + NI V+GHVDSGK++    L         DK    +      ++G  SF+ A + + L 
Sbjct: 35  NFNIGVLGHVDSGKTSLAKALSTTASTASFDKNPQSQERGITLDLGFSSFQVA-LPEHL- 92

Query: 205 AERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVXAGTGEFE 384
             R  G   D+           +T++D PGH   IK +I G      A +I   GT   E
Sbjct: 93  --RSAGSEHDLL---------QMTLVDCPGHASLIKTIIGG------AQIIGECGT--IE 133

Query: 385 AGISKNGQTR 414
            G  ++G+ +
Sbjct: 134 GGFGQSGKVK 143


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +1

Query: 271 VTIIDAPGHRDFIKNMITGTSHADCAVLIVXAGTG 375
           +T ID PGH  F      G +  D  VL+V A  G
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/49 (26%), Positives = 20/49 (40%)
 Frame = +1

Query: 220 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVXA 366
           GIT  I  +  +     +  +D PGH  F      G    D  +++V A
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 277 IIDAPGHRDFIKNMITGTSHADCAVLIV 360
           IID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1229

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -2

Query: 222 TTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 82
           TT+T S     YPS+   +  +F        D T  N TT V  +T+
Sbjct: 236 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSITA 282


>SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)
          Length = 737

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = -2

Query: 231 DCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 82
           D  TT+T S     YPS+   +  +F        D T  N TT V  +++
Sbjct: 344 DFPTTITPSPNITSYPSLMTSAVGNFTSAKSVVFDSTTPNATTLVPSISA 393



 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -2

Query: 222 TTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 82
           TT+T S     YPS+   +  +F        D T  N TT V  +++
Sbjct: 548 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVQSISA 594


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +1

Query: 196 KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIV 360
           + K E ER ITI +         Y    +D PGH   +  M+ G +  D A+L++
Sbjct: 49  RFKNELERNITIKLG--------YANAKVDCPGHDILMATMLNGAAVMDAALLLI 95


>SB_32303| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 979

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +1

Query: 271 VTIIDAPGHRDFIKNMITGTSHADCAVLIVXAGTGEFEAGISKNG 405
           +TIIDA   ++ +   +  TSH  C   +  A  G+++A    +G
Sbjct: 666 ITIIDANYPQNILDCFVVCTSHLLCITAVPGASPGDYDAASVGDG 710


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,050,642
Number of Sequences: 59808
Number of extensions: 432877
Number of successful extensions: 1131
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)