Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0657
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 281 3e-76
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 281 3e-76
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 281 3e-76
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 234 4e-62
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 177 5e-45
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 177 5e-45
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 159 2e-39
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 130 7e-31
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 78 7e-15
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 78 7e-15
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 78 7e-15
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 75 4e-14
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 75 4e-14
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 56 2e-08
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 54 1e-07
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 54 1e-07
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 44 1e-04
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 44 1e-04
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 36 0.001
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 38 0.009
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 38 0.009
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 34 0.085
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 34 0.085
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 33 0.15
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 29 2.4
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 29 2.4
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 29 2.4
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 4.2
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 29 4.2
Z99278-6|CAD59170.1| 276|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z99278-5|CAB16489.1| 290|Caenorhabditis elegans Hypothetical pr... 28 7.4
AF022388-1|AAC38956.1| 290|Caenorhabditis elegans putative tran... 28 7.4
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 281 bits (690), Expect = 3e-76
Identities = 131/141 (92%), Positives = 135/141 (95%)
Frame = +1
Query: 19 RXKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 198
+ K HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK
Sbjct: 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 62
Query: 199 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVXAGTGE 378
LKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTS ADCAVL+V GTGE
Sbjct: 63 LKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGE 122
Query: 379 FEAGISKNGQTREHALLAFTL 441
FEAGISKNGQTREHALLA TL
Sbjct: 123 FEAGISKNGQTREHALLAQTL 143
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +1
Query: 598 DGTXTTCWSLQPKCLGSXDGXVEP*RKQI*PEMP 699
D T TTC C GS DG + RK+ PE P
Sbjct: 178 DSTETTCLRSPRTCHGSRDGLLNA-RKETLPERP 210
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 281 bits (690), Expect = 3e-76
Identities = 131/141 (92%), Positives = 135/141 (95%)
Frame = +1
Query: 19 RXKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 198
+ K HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK
Sbjct: 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 62
Query: 199 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVXAGTGE 378
LKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTS ADCAVL+V GTGE
Sbjct: 63 LKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGE 122
Query: 379 FEAGISKNGQTREHALLAFTL 441
FEAGISKNGQTREHALLA TL
Sbjct: 123 FEAGISKNGQTREHALLAQTL 143
Score = 64.1 bits (149), Expect = 9e-11
Identities = 26/37 (70%), Positives = 30/37 (81%)
Frame = +3
Query: 549 RKXGYNPSAVAFVPISGWHGXNMLEPSTKMPWFXGWA 659
+K GYNP AV FVPISG++G NMLE S+ MPWF GWA
Sbjct: 179 KKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWA 215
Score = 57.2 bits (132), Expect = 1e-08
Identities = 27/42 (64%), Positives = 29/42 (69%)
Frame = +2
Query: 443 GVKQLIVGVNKMDSTEPPYXEPRFEEIXKEVSSYXKKDXLQP 568
GVKQLIV NKMDSTEPP+ E RF EI EVS + KK P
Sbjct: 144 GVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNP 185
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 281 bits (690), Expect = 3e-76
Identities = 131/141 (92%), Positives = 135/141 (95%)
Frame = +1
Query: 19 RXKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 198
+ K HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK
Sbjct: 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 62
Query: 199 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVXAGTGE 378
LKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTS ADCAVL+V GTGE
Sbjct: 63 LKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGE 122
Query: 379 FEAGISKNGQTREHALLAFTL 441
FEAGISKNGQTREHALLA TL
Sbjct: 123 FEAGISKNGQTREHALLAQTL 143
Score = 64.1 bits (149), Expect = 9e-11
Identities = 26/37 (70%), Positives = 30/37 (81%)
Frame = +3
Query: 549 RKXGYNPSAVAFVPISGWHGXNMLEPSTKMPWFXGWA 659
+K GYNP AV FVPISG++G NMLE S+ MPWF GWA
Sbjct: 179 KKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWA 215
Score = 57.2 bits (132), Expect = 1e-08
Identities = 27/42 (64%), Positives = 29/42 (69%)
Frame = +2
Query: 443 GVKQLIVGVNKMDSTEPPYXEPRFEEIXKEVSSYXKKDXLQP 568
GVKQLIV NKMDSTEPP+ E RF EI EVS + KK P
Sbjct: 144 GVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNP 185
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 234 bits (573), Expect = 4e-62
Identities = 107/114 (93%), Positives = 111/114 (97%)
Frame = +1
Query: 19 RXKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 198
+ K HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK
Sbjct: 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 62
Query: 199 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIV 360
LKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTS ADCAVL+V
Sbjct: 63 LKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVV 116
Score = 64.1 bits (149), Expect = 9e-11
Identities = 26/37 (70%), Positives = 30/37 (81%)
Frame = +3
Query: 549 RKXGYNPSAVAFVPISGWHGXNMLEPSTKMPWFXGWA 659
+K GYNP AV FVPISG++G NMLE S+ MPWF GWA
Sbjct: 145 KKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWA 181
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/47 (53%), Positives = 29/47 (61%)
Frame = +2
Query: 428 SLSPCGVKQLIVGVNKMDSTEPPYXEPRFEEIXKEVSSYXKKDXLQP 568
S + C V L+V NKMDSTEPP+ E RF EI EVS + KK P
Sbjct: 107 SQADCAV--LVVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNP 151
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 177 bits (432), Expect = 5e-45
Identities = 81/139 (58%), Positives = 102/139 (73%)
Frame = +1
Query: 25 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 204
K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+ +
Sbjct: 168 KDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDETE 227
Query: 205 AERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVXAGTGEFE 384
ERERG+T+DI FETS + ++DAPGH+DFI NMITGTS AD A+L+V A TGEFE
Sbjct: 228 EERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFE 287
Query: 385 AGISKNGQTREHALLAFTL 441
G GQT+EHALL +L
Sbjct: 288 TGFENGGQTKEHALLLRSL 306
Score = 31.9 bits (69), Expect = 0.45
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +2
Query: 431 LSPCGVKQLIVGVNKMDSTEPPYXEPRFEEIXKEVSSY 544
L GV QLIV VNK+D+ + + + RF+EI +S +
Sbjct: 303 LRSLGVTQLIVAVNKLDTVD--WSQDRFDEIKNNLSVF 338
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 177 bits (432), Expect = 5e-45
Identities = 81/139 (58%), Positives = 102/139 (73%)
Frame = +1
Query: 25 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 204
K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+ +
Sbjct: 186 KDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDETE 245
Query: 205 AERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVXAGTGEFE 384
ERERG+T+DI FETS + ++DAPGH+DFI NMITGTS AD A+L+V A TGEFE
Sbjct: 246 EERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFE 305
Query: 385 AGISKNGQTREHALLAFTL 441
G GQT+EHALL +L
Sbjct: 306 TGFENGGQTKEHALLLRSL 324
Score = 31.9 bits (69), Expect = 0.45
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +2
Query: 431 LSPCGVKQLIVGVNKMDSTEPPYXEPRFEEIXKEVSSY 544
L GV QLIV VNK+D+ + + + RF+EI +S +
Sbjct: 321 LRSLGVTQLIVAVNKLDTVD--WSQDRFDEIKNNLSVF 356
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 159 bits (386), Expect = 2e-39
Identities = 70/138 (50%), Positives = 98/138 (71%)
Frame = +1
Query: 25 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 204
K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 107 KEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMDTND 166
Query: 205 AERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVXAGTGEFE 384
ERE+G T+++ FET K + TI+DAPGH+ F+ NMI G + AD AVL++ A GEFE
Sbjct: 167 EEREKGKTVEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRGEFE 226
Query: 385 AGISKNGQTREHALLAFT 438
G + GQTREH++L T
Sbjct: 227 TGFDRGGQTREHSMLVKT 244
Score = 35.5 bits (78), Expect = 0.037
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +2
Query: 443 GVKQLIVGVNKMDSTEPPYXEPRFEEIXKEVSSYXKKDXLQP 568
GVK L++ VNKMD + E RF+EI +++ + +K P
Sbjct: 246 GVKHLVILVNKMDDPTVKWEEERFKEIEGKLTPFLRKLGFNP 287
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 130 bits (315), Expect = 7e-31
Identities = 59/65 (90%), Positives = 61/65 (93%)
Frame = +1
Query: 19 RXKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 198
+ K HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK
Sbjct: 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 62
Query: 199 LKAER 213
LK +
Sbjct: 63 LKVTK 67
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 77.8 bits (183), Expect = 7e-15
Identities = 51/138 (36%), Positives = 68/138 (49%)
Frame = +1
Query: 19 RXKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 198
R K H+N+ IGHVD GK+T T + K+E +D
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYED---------------IDN 89
Query: 199 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVXAGTGE 378
E+ RGITI+ ++ET+K + ID PGH D+IKNMITG + + A+L+V A G
Sbjct: 90 APEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGP 149
Query: 379 FEAGISKNGQTREHALLA 432
QTREH LLA
Sbjct: 150 MP-------QTREHLLLA 160
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 77.8 bits (183), Expect = 7e-15
Identities = 51/138 (36%), Positives = 68/138 (49%)
Frame = +1
Query: 19 RXKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 198
R K H+N+ IGHVD GK+T T + K+E +D
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYED---------------IDN 90
Query: 199 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVXAGTGE 378
E+ RGITI+ ++ET+K + ID PGH D+IKNMITG + + A+L+V A G
Sbjct: 91 APEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGP 150
Query: 379 FEAGISKNGQTREHALLA 432
QTREH LLA
Sbjct: 151 MP-------QTREHLLLA 161
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 77.8 bits (183), Expect = 7e-15
Identities = 51/138 (36%), Positives = 68/138 (49%)
Frame = +1
Query: 19 RXKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 198
R K H+N+ IGHVD GK+T T + K+E +D
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYED---------------IDN 90
Query: 199 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVXAGTGE 378
E+ RGITI+ ++ET+K + ID PGH D+IKNMITG + + A+L+V A G
Sbjct: 91 APEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGP 150
Query: 379 FEAGISKNGQTREHALLA 432
QTREH LLA
Sbjct: 151 MP-------QTREHLLLA 161
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 75.4 bits (177), Expect = 4e-14
Identities = 53/141 (37%), Positives = 74/141 (52%), Gaps = 2/141 (1%)
Frame = +1
Query: 16 ARXKTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 189
A K ++N+ IGH+D GK+T T + + G K KF++
Sbjct: 40 ATPKINVNVGTIGHIDHGKTTLTSAITRVQAKKGFAKHI--KFDE--------------- 82
Query: 190 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVXAG 369
+DK K E++RGITI++A +E+ + D PGH DFIKNMI GTS D AVL++ A
Sbjct: 83 IDKGKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAAT 142
Query: 370 TGEFEAGISKNGQTREHALLA 432
G E QT+EH +LA
Sbjct: 143 DGVME-------QTKEHLILA 156
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 75.4 bits (177), Expect = 4e-14
Identities = 53/141 (37%), Positives = 74/141 (52%), Gaps = 2/141 (1%)
Frame = +1
Query: 16 ARXKTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 189
A K ++N+ IGH+D GK+T T + + G K KF++
Sbjct: 40 ATPKINVNVGTIGHIDHGKTTLTSAITRVQAKKGFAKHI--KFDE--------------- 82
Query: 190 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVXAG 369
+DK K E++RGITI++A +E+ + D PGH DFIKNMI GTS D AVL++ A
Sbjct: 83 IDKGKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAAT 142
Query: 370 TGEFEAGISKNGQTREHALLA 432
G E QT+EH +LA
Sbjct: 143 DGVME-------QTKEHLILA 156
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 56.0 bits (129), Expect = 2e-08
Identities = 39/113 (34%), Positives = 53/113 (46%)
Frame = +1
Query: 37 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 216
NI VI HVD+GK+T T L+Y G I A + KG+ V D L ERE
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAIHV---------AGHVDKGNT----VTDFLDIERE 73
Query: 217 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVXAGTG 375
RGIT+ A + + + +ID PGH DF + D V+++ G
Sbjct: 74 RGITVQSAAVNLDWKGHRINLIDTPGHVDFRVEVERCVRVLDGIVVVIDGSAG 126
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 54.0 bits (124), Expect = 1e-07
Identities = 38/113 (33%), Positives = 53/113 (46%)
Frame = +1
Query: 37 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 216
NI + H+DSGK+T T ++Y G ID E+ +G +D + ER+
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRIDSM---------HEV-RGKDDVGATMDFMDLERQ 95
Query: 217 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVXAGTG 375
RGITI A + + IID PGH DF + D AVL++ G G
Sbjct: 96 RGITIQSAATYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLVL-CGVG 147
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 54.0 bits (124), Expect = 1e-07
Identities = 36/113 (31%), Positives = 51/113 (45%)
Frame = +1
Query: 37 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 216
N ++ HVD GKST L+ CG + +K+ +LDKL+ ERE
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPG-----QKQ-------------MLDKLQVERE 85
Query: 217 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVXAGTG 375
RGIT+ Y + +ID PGH DF + + D +L+V A G
Sbjct: 86 RGITVKAQTAALRHRGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG 138
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 44.0 bits (99), Expect = 1e-04
Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 13/126 (10%)
Frame = +1
Query: 37 NIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKF---EKEAQE----MGKGSFKYAWV 189
N+ VI HVD GKST T L+ K G I K +F K+ QE + + +
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKSTAISLFFE 80
Query: 190 LDKLKAERERG----ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLI 357
L+K E +G T+++ K + + + + +ID+PGH DF + D A+++
Sbjct: 81 LEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALGVTDGALVV 140
Query: 358 VXAGTG 375
V +G
Sbjct: 141 VDCVSG 146
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 43.6 bits (98), Expect = 1e-04
Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 13/126 (10%)
Frame = +1
Query: 37 NIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKF---EKEAQE----MGKGSFKYAWV 189
N+ VI HVD GKST T L+ K G I K +F K+ QE + + +
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKSTAISLFFE 80
Query: 190 LDKLKAERERG----ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLI 357
L+K E +G T+++ K + + + + +ID+PGH DF + D A+++
Sbjct: 81 LEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALRVTDGALVV 140
Query: 358 VXAGTG 375
V +G
Sbjct: 141 VDCVSG 146
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 36.3 bits (80), Expect(2) = 0.001
Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +1
Query: 160 GKGSFKYAWVLDKLKAERERGITIDIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSH 336
GK + A ++ A GIT I + E +K VT +D PGH F G
Sbjct: 168 GKTTLLDAMRNSQIAAGEFGGITQHIGAFSVELTKGRRVTFLDTPGHAAFASMRARGAKG 227
Query: 337 ADCAVLIVXAGTG 375
AD VL+V A G
Sbjct: 228 ADIVVLVVAADDG 240
Score = 23.0 bits (47), Expect(2) = 0.001
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +1
Query: 40 IVVIGHVDSGKST 78
+ ++GHVD GK+T
Sbjct: 159 VTIMGHVDHGKTT 171
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 37.5 bits (83), Expect = 0.009
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Frame = +1
Query: 31 HI-NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKA 207
HI N+ ++ HVD GK++ L+ I R G +Y +D +
Sbjct: 19 HIRNVCLVAHVDHGKTSFADSLVSANAVISSRMA------------GKLRY---MDSRED 63
Query: 208 ERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIV 360
E+ RGIT+ + + +ID+PGH DF + + +D A+L++
Sbjct: 64 EQTRGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 37.5 bits (83), Expect = 0.009
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Frame = +1
Query: 31 HI-NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKA 207
HI N+ ++ HVD GK++ L+ I R G +Y +D +
Sbjct: 19 HIRNVCLVAHVDHGKTSFADSLVSANAVISSRMA------------GKLRY---MDSRED 63
Query: 208 ERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIV 360
E+ RGIT+ + + +ID+PGH DF + + +D A+L++
Sbjct: 64 EQTRGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLI 114
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 34.3 bits (75), Expect = 0.085
Identities = 28/113 (24%), Positives = 47/113 (41%)
Frame = +1
Query: 37 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 216
N+ + GH+ GK+T L+ ++T +F + E F ++K +
Sbjct: 134 NVAIAGHLHHGKTTFLDCLM-------EQTHPEFYRA--EDADARFTDILFIEKQRGCSI 184
Query: 217 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVXAGTG 375
+ + I + Y + IID PGH +F M AD V++V A G
Sbjct: 185 KSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 34.3 bits (75), Expect = 0.085
Identities = 28/113 (24%), Positives = 47/113 (41%)
Frame = +1
Query: 37 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 216
N+ + GH+ GK+T L+ ++T +F + E F ++K +
Sbjct: 9 NVAIAGHLHHGKTTFLDCLM-------EQTHPEFYRA--EDADARFTDILFIEKQRGCSI 59
Query: 217 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVXAGTG 375
+ + I + Y + IID PGH +F M AD V++V A G
Sbjct: 60 KSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 112
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 33.5 bits (73), Expect = 0.15
Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 1/134 (0%)
Frame = +1
Query: 34 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 213
+N+ ++GHVDSGK+T T + E+G S A
Sbjct: 14 LNLGILGHVDSGKTTLT-------------------RRIAELGSTSAFDAHATSTTTDGI 54
Query: 214 ERGITIDIALWKFET-SKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVXAGTGEFEAG 390
R T+D+ + S + +ID PGH I+ ++ ++ D A++I+ + AG
Sbjct: 55 RRN-TLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAG 108
Query: 391 ISKNGQTREHALLA 432
I QT EH LLA
Sbjct: 109 IQP--QTAEHLLLA 120
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 115 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 216
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 115 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 216
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 277 IIDAPGHRDFIKNMITGTSHADCAVLIV 360
IID PGH F G+S D A+L+V
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV 580
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 29.1 bits (62), Expect = 3.2
Identities = 36/122 (29%), Positives = 49/122 (40%), Gaps = 10/122 (8%)
Frame = +1
Query: 34 INIVVIGHVDSGKSTTTGHLIYKC--GGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKA 207
+ + V+G D GKST G L C G K I F + E+ G K + V + +
Sbjct: 169 VRLAVVGGCDVGKSTLCGVLTQGCLDDGNGKARIGIF-RFPHEVRTG--KTSSVCNDVIG 225
Query: 208 ERERGITIDIALWKF----ETSKYYVTIIDAPGHRDFIKNMITG----TSHADCAVLIVX 363
RG ++ A E S VT+ID G + K I G T H C V+
Sbjct: 226 FDNRGKLVNYAQNSLEEMVEKSSKLVTLIDLAGDAKYQKTTIHGLTGYTPHFACLVVAAD 285
Query: 364 AG 369
G
Sbjct: 286 RG 287
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 34 INIVVIGHVDSGKSTTT 84
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 268 YVTIIDAPGHRDFIKNMITGTSHADCAVLIV 360
+V+ +D PGH + M+ G + D A L+V
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLV 158
>Z99278-6|CAD59170.1| 276|Caenorhabditis elegans Hypothetical
protein Y53C12B.5b protein.
Length = 276
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 266 TMLPSLMLLDTEISSRT*SQEPLTLIALCSSXLPVPVNSKLVSLR 400
TM PSL + S +Q LTL A P+P+N +L+SL+
Sbjct: 61 TMSPSLSMSPPCSPSPLLAQYTLTLAAPIPIYPPIPMNQQLISLQ 105
>Z99278-5|CAB16489.1| 290|Caenorhabditis elegans Hypothetical
protein Y53C12B.5a protein.
Length = 290
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 266 TMLPSLMLLDTEISSRT*SQEPLTLIALCSSXLPVPVNSKLVSLR 400
TM PSL + S +Q LTL A P+P+N +L+SL+
Sbjct: 194 TMSPSLSMSPPCSPSPLLAQYTLTLAAPIPIYPPIPMNQQLISLQ 238
>AF022388-1|AAC38956.1| 290|Caenorhabditis elegans putative
transcription factor MAB-3 protein.
Length = 290
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 266 TMLPSLMLLDTEISSRT*SQEPLTLIALCSSXLPVPVNSKLVSLR 400
TM PSL + S +Q LTL A P+P+N +L+SL+
Sbjct: 194 TMSPSLSMSPPCSPSPLLAQYTLTLAAPIPIYPPIPMNQQLISLQ 238
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,504,408
Number of Sequences: 27780
Number of extensions: 315831
Number of successful extensions: 883
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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