BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0656 (750 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 29 0.94 SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 29 0.94 SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo... 27 2.2 SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha... 27 2.9 SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch... 27 3.8 SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 27 3.8 SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces... 26 5.0 SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe... 26 6.6 SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 8.7 >SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 791 Score = 28.7 bits (61), Expect = 0.94 Identities = 14/26 (53%), Positives = 18/26 (69%) Frame = -2 Query: 170 STRTSNICPIRLNIFKELSSIGVHNP 93 +T NI PIRLN++K L+S G H P Sbjct: 723 NTFNLNIGPIRLNVYKHLNSDG-HQP 747 >SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr 3|||Manual Length = 577 Score = 28.7 bits (61), Expect = 0.94 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%) Frame = +1 Query: 520 FQVDHYNELLQAYIANNRTIVVTTFINKMLPVKPN--ITTYELIIRALRXAGDLNQA 684 +QV E Q Y++ + TFI K + +PN I +EL + +G +QA Sbjct: 4 YQVKAIKEKTQQYLSKRKFEDALTFITKTIEQEPNPTIDLFELRAQVYEKSGQYSQA 60 >SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharomyces pombe|chr 1|||Manual Length = 583 Score = 27.5 bits (58), Expect = 2.2 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = +1 Query: 205 NLSSGRGNISQTVSTEFLKNTDRMSS 282 NL S G T S++FLK+TDR S Sbjct: 368 NLISSLGTSPSTFSSQFLKSTDRTHS 393 >SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 535 Score = 27.1 bits (57), Expect = 2.9 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = -2 Query: 161 TSNICPIRLNIFKELSSIGVHNPNSLTS 78 T+N+CPI N+F+ N LTS Sbjct: 54 TANVCPISKNLFQSYPKGSYRNSQRLTS 81 >SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 681 Score = 26.6 bits (56), Expect = 3.8 Identities = 12/29 (41%), Positives = 20/29 (68%) Frame = -3 Query: 313 IQLLISLKVLQMTFYQYSSEIQ*RLFVKY 227 +QLL++ ++LQ+T Y Y E + F+KY Sbjct: 393 LQLLLADRLLQLTDYHYEVEAKNIEFLKY 421 >SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 1261 Score = 26.6 bits (56), Expect = 3.8 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%) Frame = +1 Query: 613 VKPNITTYELIIRAL-RXAGDLNQATEVLS 699 + PN+TT+E +I AL R A ++Q E LS Sbjct: 253 ISPNVTTFETVIFALCRRAKFVHQKIESLS 282 >SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces pombe|chr 3|||Manual Length = 497 Score = 26.2 bits (55), Expect = 5.0 Identities = 13/34 (38%), Positives = 18/34 (52%) Frame = -2 Query: 383 FTLFITLIKSFLYTLFF*CISVDNPAINFSKSSS 282 F LFI ++ S ++FF + V N A N K S Sbjct: 262 FMLFIWIVYSIFLSIFFKEVRVGNTATNVRKPES 295 >SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe|chr 1|||Manual Length = 590 Score = 25.8 bits (54), Expect = 6.6 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Frame = +1 Query: 220 RGNISQT-VSTEFLKNTDRMSSEELLEKLIAGLSTDIHQKNRVYKND 357 R +I++T VS FLK D E+L EK+ + D+ + + K++ Sbjct: 459 RPDITETKVSKTFLKKLDAFHEEKLREKINSSDKGDVSYEFELLKDE 505 >SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 565 Score = 25.4 bits (53), Expect = 8.7 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = +1 Query: 184 AINKCSVNLSSGRGNISQTVSTEF-LKNTDRMSSEELLEKLIAGLSTDIHQ 333 AI ++ +G ++S S L+N DR SEE L K ++ L D+ + Sbjct: 188 AIGNHKISKRNGDMDVSDVPSVYLILRNLDRSLSEETLWKGLSKLEIDVQR 238 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,687,641 Number of Sequences: 5004 Number of extensions: 50155 Number of successful extensions: 164 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 159 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 164 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 357280532 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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