Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0656
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    29   0.94 
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    29   0.94 
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    27   2.2  
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha...    27   2.9  
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch...    27   3.8  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    27   3.8  
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    26   5.0  
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe...    26   6.6  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   8.7  

>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -2

Query: 170 STRTSNICPIRLNIFKELSSIGVHNP 93
           +T   NI PIRLN++K L+S G H P
Sbjct: 723 NTFNLNIGPIRLNVYKHLNSDG-HQP 747


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +1

Query: 520 FQVDHYNELLQAYIANNRTIVVTTFINKMLPVKPN--ITTYELIIRALRXAGDLNQA 684
           +QV    E  Q Y++  +     TFI K +  +PN  I  +EL  +    +G  +QA
Sbjct: 4   YQVKAIKEKTQQYLSKRKFEDALTFITKTIEQEPNPTIDLFELRAQVYEKSGQYSQA 60


>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 205 NLSSGRGNISQTVSTEFLKNTDRMSS 282
           NL S  G    T S++FLK+TDR  S
Sbjct: 368 NLISSLGTSPSTFSSQFLKSTDRTHS 393


>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 535

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 161 TSNICPIRLNIFKELSSIGVHNPNSLTS 78
           T+N+CPI  N+F+        N   LTS
Sbjct: 54  TANVCPISKNLFQSYPKGSYRNSQRLTS 81


>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 681

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -3

Query: 313 IQLLISLKVLQMTFYQYSSEIQ*RLFVKY 227
           +QLL++ ++LQ+T Y Y  E +   F+KY
Sbjct: 393 LQLLLADRLLQLTDYHYEVEAKNIEFLKY 421


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +1

Query: 613 VKPNITTYELIIRAL-RXAGDLNQATEVLS 699
           + PN+TT+E +I AL R A  ++Q  E LS
Sbjct: 253 ISPNVTTFETVIFALCRRAKFVHQKIESLS 282


>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 383 FTLFITLIKSFLYTLFF*CISVDNPAINFSKSSS 282
           F LFI ++ S   ++FF  + V N A N  K  S
Sbjct: 262 FMLFIWIVYSIFLSIFFKEVRVGNTATNVRKPES 295


>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 590

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 220 RGNISQT-VSTEFLKNTDRMSSEELLEKLIAGLSTDIHQKNRVYKND 357
           R +I++T VS  FLK  D    E+L EK+ +    D+  +  + K++
Sbjct: 459 RPDITETKVSKTFLKKLDAFHEEKLREKINSSDKGDVSYEFELLKDE 505


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 184 AINKCSVNLSSGRGNISQTVSTEF-LKNTDRMSSEELLEKLIAGLSTDIHQ 333
           AI    ++  +G  ++S   S    L+N DR  SEE L K ++ L  D+ +
Sbjct: 188 AIGNHKISKRNGDMDVSDVPSVYLILRNLDRSLSEETLWKGLSKLEIDVQR 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,687,641
Number of Sequences: 5004
Number of extensions: 50155
Number of successful extensions: 164
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)