BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0656 (750 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_3323| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7 SB_39545| Best HMM Match : TolA (HMM E-Value=0.12) 30 2.3 SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05) 29 3.0 SB_39605| Best HMM Match : zf-TRAF (HMM E-Value=5.3e-39) 28 9.3 >SB_3323| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 872 Score = 30.3 bits (65), Expect = 1.7 Identities = 24/140 (17%), Positives = 61/140 (43%), Gaps = 2/140 (1%) Frame = +1 Query: 175 MHKAINKCSVNLSSGRGNISQTVSTEFLKNTDRMSSEELLEKLIAGLSTDIHQKNRVYKN 354 M + + + + S + +S + L+ ++ + LL++++ L+ +IHQKN Sbjct: 356 MTDRMRRRATEMQSSVAEVENEISRDVLEISNTTTRIRLLQEVMDSLNDEIHQKN----E 411 Query: 355 DLMRVINRVKEMN--FSTKKQGXXXXXXXXXXXPDETPSARMALVELVWNTLKPHTKFQV 528 D+ ++ N + + N K+ + + +EL +TL+ + ++ Sbjct: 412 DISKIENEIVKCNAIIERKQSTIDQYNKRIDQIRSKDGGEELGPLELQIHTLQKQIEARM 471 Query: 529 DHYNELLQAYIANNRTIVVT 588 + +L Q ++ + +V T Sbjct: 472 NDIIQLQQFWLRSQSELVKT 491 >SB_39545| Best HMM Match : TolA (HMM E-Value=0.12) Length = 1189 Score = 29.9 bits (64), Expect = 2.3 Identities = 17/66 (25%), Positives = 33/66 (50%) Frame = +1 Query: 190 NKCSVNLSSGRGNISQTVSTEFLKNTDRMSSEELLEKLIAGLSTDIHQKNRVYKNDLMRV 369 N+ S N +S + S E L +R+ + LLE + + T++ QK + ++ DL+ Sbjct: 294 NEISKNKASRPLASEEERSIEVLSEVERIERQALLESVNEPVQTEVQQKRKSHEWDLLEK 353 Query: 370 INRVKE 387 ++E Sbjct: 354 WKELEE 359 >SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05) Length = 2200 Score = 29.5 bits (63), Expect = 3.0 Identities = 14/46 (30%), Positives = 23/46 (50%) Frame = +1 Query: 559 IANNRTIVVTTFINKMLPVKPNITTYELIIRALRXAGDLNQATEVL 696 ++ N T+ T+I P K ++ TY L ++ LR A + VL Sbjct: 1135 LSKNMTLRAKTYILNSRPYKFSVKTYHLTVKTLRDASKMTIRESVL 1180 >SB_39605| Best HMM Match : zf-TRAF (HMM E-Value=5.3e-39) Length = 684 Score = 27.9 bits (59), Expect = 9.3 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%) Frame = -2 Query: 320 VDNPAINFSKSSSDDILSVFFRNSVETVCEIFPRPLD-RFTEHLL 189 VDN AI++S+ +DD+ + S+ +C+ + D R+ +H L Sbjct: 22 VDNTAIDYSQVYADDVTNQMIM-SLTVICDYYQAGFDTRYWDHSL 65 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,510,385 Number of Sequences: 59808 Number of extensions: 326309 Number of successful extensions: 1011 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 928 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1008 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 2034222073 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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