Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0656
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3323| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.7  
SB_39545| Best HMM Match : TolA (HMM E-Value=0.12)                     30   2.3  
SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)                   29   3.0  
SB_39605| Best HMM Match : zf-TRAF (HMM E-Value=5.3e-39)               28   9.3  

>SB_3323| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 872

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 24/140 (17%), Positives = 61/140 (43%), Gaps = 2/140 (1%)
 Frame = +1

Query: 175 MHKAINKCSVNLSSGRGNISQTVSTEFLKNTDRMSSEELLEKLIAGLSTDIHQKNRVYKN 354
           M   + + +  + S    +   +S + L+ ++  +   LL++++  L+ +IHQKN     
Sbjct: 356 MTDRMRRRATEMQSSVAEVENEISRDVLEISNTTTRIRLLQEVMDSLNDEIHQKN----E 411

Query: 355 DLMRVINRVKEMN--FSTKKQGXXXXXXXXXXXPDETPSARMALVELVWNTLKPHTKFQV 528
           D+ ++ N + + N     K+               +     +  +EL  +TL+   + ++
Sbjct: 412 DISKIENEIVKCNAIIERKQSTIDQYNKRIDQIRSKDGGEELGPLELQIHTLQKQIEARM 471

Query: 529 DHYNELLQAYIANNRTIVVT 588
           +   +L Q ++ +   +V T
Sbjct: 472 NDIIQLQQFWLRSQSELVKT 491


>SB_39545| Best HMM Match : TolA (HMM E-Value=0.12)
          Length = 1189

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/66 (25%), Positives = 33/66 (50%)
 Frame = +1

Query: 190 NKCSVNLSSGRGNISQTVSTEFLKNTDRMSSEELLEKLIAGLSTDIHQKNRVYKNDLMRV 369
           N+ S N +S      +  S E L   +R+  + LLE +   + T++ QK + ++ DL+  
Sbjct: 294 NEISKNKASRPLASEEERSIEVLSEVERIERQALLESVNEPVQTEVQQKRKSHEWDLLEK 353

Query: 370 INRVKE 387
              ++E
Sbjct: 354 WKELEE 359


>SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)
          Length = 2200

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 559  IANNRTIVVTTFINKMLPVKPNITTYELIIRALRXAGDLNQATEVL 696
            ++ N T+   T+I    P K ++ TY L ++ LR A  +     VL
Sbjct: 1135 LSKNMTLRAKTYILNSRPYKFSVKTYHLTVKTLRDASKMTIRESVL 1180


>SB_39605| Best HMM Match : zf-TRAF (HMM E-Value=5.3e-39)
          Length = 684

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -2

Query: 320 VDNPAINFSKSSSDDILSVFFRNSVETVCEIFPRPLD-RFTEHLL 189
           VDN AI++S+  +DD+ +     S+  +C+ +    D R+ +H L
Sbjct: 22  VDNTAIDYSQVYADDVTNQMIM-SLTVICDYYQAGFDTRYWDHSL 65


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,510,385
Number of Sequences: 59808
Number of extensions: 326309
Number of successful extensions: 1011
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)