Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0656
(750 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC130285-1|AAI30286.1| 1394|Homo sapiens leucine-rich PPR-motif ... 67 6e-11
BC050311-1|AAH50311.1| 1394|Homo sapiens leucine-rich PPR-motif ... 67 6e-11
BC026034-1|AAH26034.1| 531|Homo sapiens LRPPRC protein protein. 67 6e-11
AY289212-1|AAP41922.1| 1394|Homo sapiens leucine-rich PPR motif-... 67 6e-11
AK125781-1|BAC86287.1| 1394|Homo sapiens protein ( Homo sapiens ... 67 6e-11
AC127379-1|AAY24043.1| 549|Homo sapiens unknown protein. 67 6e-11
M92439-1|AAA67549.1| 1273|Homo sapiens leucine-rich PPR-motif co... 66 1e-10
>BC130285-1|AAI30286.1| 1394|Homo sapiens leucine-rich PPR-motif
containing protein.
Length = 1394
Score = 67.3 bits (157), Expect = 6e-11
Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 3/149 (2%)
Frame = +1
Query: 313 LSTDIHQKNRVYKNDLMRVINRVKEMNFSTKKQGXXXXXXXXXXXPDETPSARMALVELV 492
L + + R+ K L +V N P+ R +
Sbjct: 90 LDLSVRRTGRIPKKLLQKVFNDTCRSGGLGGSHALLLLRSCGSLLPELKLEERTEFAHRI 149
Query: 493 WNTL-KPHTKFQVDHYNELLQAYIANNRTIVVTTFINKM--LPVKPNITTYELIIRALRX 663
W+TL K + V HYN LL+ Y+ N T F+ KM ++PN TY+ +I +
Sbjct: 150 WDTLQKLGAVYDVSHYNALLKVYLQNEYKFSPTDFLAKMEEANIQPNRVTYQRLIASYCN 209
Query: 664 AGDLNQATEVLSNMKAQNLPATENIFNSL 750
GD+ A+++L MK ++LP TE +F++L
Sbjct: 210 VGDIEGASKILGFMKTKDLPVTEAVFSAL 238
>BC050311-1|AAH50311.1| 1394|Homo sapiens leucine-rich PPR-motif
containing protein.
Length = 1394
Score = 67.3 bits (157), Expect = 6e-11
Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 3/149 (2%)
Frame = +1
Query: 313 LSTDIHQKNRVYKNDLMRVINRVKEMNFSTKKQGXXXXXXXXXXXPDETPSARMALVELV 492
L + + R+ K L +V N P+ R +
Sbjct: 90 LDLSVRRTGRIPKKLLQKVFNDTCRSGGLGGSHALLLLRSCGSLLPELKLEERTEFAHRI 149
Query: 493 WNTL-KPHTKFQVDHYNELLQAYIANNRTIVVTTFINKM--LPVKPNITTYELIIRALRX 663
W+TL K + V HYN LL+ Y+ N T F+ KM ++PN TY+ +I +
Sbjct: 150 WDTLQKLGAVYDVSHYNALLKVYLQNEYKFSPTDFLAKMEEANIQPNRVTYQRLIASYCN 209
Query: 664 AGDLNQATEVLSNMKAQNLPATENIFNSL 750
GD+ A+++L MK ++LP TE +F++L
Sbjct: 210 VGDIEGASKILGFMKTKDLPVTEAVFSAL 238
>BC026034-1|AAH26034.1| 531|Homo sapiens LRPPRC protein protein.
Length = 531
Score = 67.3 bits (157), Expect = 6e-11
Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 3/149 (2%)
Frame = +1
Query: 313 LSTDIHQKNRVYKNDLMRVINRVKEMNFSTKKQGXXXXXXXXXXXPDETPSARMALVELV 492
L + + R+ K L +V N P+ R +
Sbjct: 90 LDLSVRRTGRIPKKLLQKVFNDTCRSGGLGGSHALLLLRSCGSLLPELKLEERTEFAHRI 149
Query: 493 WNTL-KPHTKFQVDHYNELLQAYIANNRTIVVTTFINKM--LPVKPNITTYELIIRALRX 663
W+TL K + V HYN LL+ Y+ N T F+ KM ++PN TY+ +I +
Sbjct: 150 WDTLQKLGAVYDVSHYNALLKVYLQNEYKFSPTDFLAKMEEANIQPNRVTYQRLIASYCN 209
Query: 664 AGDLNQATEVLSNMKAQNLPATENIFNSL 750
GD+ A+++L MK ++LP TE +F++L
Sbjct: 210 VGDIEGASKILGFMKTKDLPVTEAVFSAL 238
>AY289212-1|AAP41922.1| 1394|Homo sapiens leucine-rich PPR
motif-containing protein protein.
Length = 1394
Score = 67.3 bits (157), Expect = 6e-11
Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 3/149 (2%)
Frame = +1
Query: 313 LSTDIHQKNRVYKNDLMRVINRVKEMNFSTKKQGXXXXXXXXXXXPDETPSARMALVELV 492
L + + R+ K L +V N P+ R +
Sbjct: 90 LDLSVRRTGRIPKKLLQKVFNDTCRSGGLGGSHALLLLRSCGSLLPELKLEERTEFAHRI 149
Query: 493 WNTL-KPHTKFQVDHYNELLQAYIANNRTIVVTTFINKM--LPVKPNITTYELIIRALRX 663
W+TL K + V HYN LL+ Y+ N T F+ KM ++PN TY+ +I +
Sbjct: 150 WDTLQKLGAVYDVSHYNALLKVYLQNEYKFSPTDFLAKMEEANIQPNRVTYQRLIASYCN 209
Query: 664 AGDLNQATEVLSNMKAQNLPATENIFNSL 750
GD+ A+++L MK ++LP TE +F++L
Sbjct: 210 VGDIEGASKILGFMKTKDLPVTEAVFSAL 238
>AK125781-1|BAC86287.1| 1394|Homo sapiens protein ( Homo sapiens
cDNA FLJ43793 fis, clone TESTI4000014, highly similar
to 130 kDa leucine-rich protein. ).
Length = 1394
Score = 67.3 bits (157), Expect = 6e-11
Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 3/149 (2%)
Frame = +1
Query: 313 LSTDIHQKNRVYKNDLMRVINRVKEMNFSTKKQGXXXXXXXXXXXPDETPSARMALVELV 492
L + + R+ K L +V N P+ R +
Sbjct: 90 LDLSVRRTGRIPKKLLQKVFNDTCRSGGLGGSHALLLLRSCGSLLPELKLEERTEFAHRI 149
Query: 493 WNTL-KPHTKFQVDHYNELLQAYIANNRTIVVTTFINKM--LPVKPNITTYELIIRALRX 663
W+TL K + V HYN LL+ Y+ N T F+ KM ++PN TY+ +I +
Sbjct: 150 WDTLQKLGAVYDVSHYNALLKVYLQNEYKFSPTDFLAKMEEANIQPNRVTYQRLIASYCN 209
Query: 664 AGDLNQATEVLSNMKAQNLPATENIFNSL 750
GD+ A+++L MK ++LP TE +F++L
Sbjct: 210 VGDIEGASKILGFMKTKDLPVTEAVFSAL 238
>AC127379-1|AAY24043.1| 549|Homo sapiens unknown protein.
Length = 549
Score = 67.3 bits (157), Expect = 6e-11
Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 3/149 (2%)
Frame = +1
Query: 313 LSTDIHQKNRVYKNDLMRVINRVKEMNFSTKKQGXXXXXXXXXXXPDETPSARMALVELV 492
L + + R+ K L +V N P+ R +
Sbjct: 90 LDLSVRRTGRIPKKLLQKVFNDTCRSGGLGGSHALLLLRSCGSLLPELKLEERTEFAHRI 149
Query: 493 WNTL-KPHTKFQVDHYNELLQAYIANNRTIVVTTFINKM--LPVKPNITTYELIIRALRX 663
W+TL K + V HYN LL+ Y+ N T F+ KM ++PN TY+ +I +
Sbjct: 150 WDTLQKLGAVYDVSHYNALLKVYLQNEYKFSPTDFLAKMEEANIQPNRVTYQRLIASYCN 209
Query: 664 AGDLNQATEVLSNMKAQNLPATENIFNSL 750
GD+ A+++L MK ++LP TE +F++L
Sbjct: 210 VGDIEGASKILGFMKTKDLPVTEAVFSAL 238
>M92439-1|AAA67549.1| 1273|Homo sapiens leucine-rich PPR-motif
containing protein protein.
Length = 1273
Score = 66.5 bits (155), Expect = 1e-10
Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 3/104 (2%)
Frame = +1
Query: 448 PDETPSARMALVELVWNTL-KPHTKFQVDHYNELLQAYIANNRTIVVTTFINKM--LPVK 618
P+ R +W+TL K + V HYN LL+ Y+ N T F+ KM ++
Sbjct: 14 PELKLEERTEFAHRIWDTLQKLGAVYDVSHYNALLKVYLQNEYKFSPTDFLAKMEEANIQ 73
Query: 619 PNITTYELIIRALRXAGDLNQATEVLSNMKAQNLPATENIFNSL 750
PN TY+ +I + GD+ A+++L MK ++LP TE +F++L
Sbjct: 74 PNRVTYQRLIASYCNVGDIEGASKILGFMKTKDLPVTEAVFSAL 117
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,806,567
Number of Sequences: 237096
Number of extensions: 1459200
Number of successful extensions: 3051
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3044
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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