BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0656 (750 letters) Database: fruitfly 53,049 sequences; 24,988,368 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AY058795-1|AAL14024.1| 1412|Drosophila melanogaster SD10676p pro... 99 6e-21 AF327844-1|AAK50882.1| 1412|Drosophila melanogaster bicoid mRNA ... 99 6e-21 AE014134-2933|AAF53668.2| 1412|Drosophila melanogaster CG10302-P... 99 6e-21 AE014296-2672|AAF49513.1| 597|Drosophila melanogaster CG4950-PA... 31 1.3 BT011031-1|AAR30191.1| 703|Drosophila melanogaster RE45108p pro... 29 8.9 AY118638-1|AAM50007.1| 1775|Drosophila melanogaster SD02391p pro... 29 8.9 AE014298-586|AAF45910.1| 2779|Drosophila melanogaster CG6450-PC ... 29 8.9 AE014296-927|AAF50798.1| 703|Drosophila melanogaster CG4611-PA ... 29 8.9 >AY058795-1|AAL14024.1| 1412|Drosophila melanogaster SD10676p protein. Length = 1412 Score = 99.1 bits (236), Expect = 6e-21 Identities = 53/166 (31%), Positives = 85/166 (51%), Gaps = 4/166 (2%) Frame = +1 Query: 265 TDRMSSEEL-LEKLIAGLSTDIHQKNRVYKNDLMRVINRVKEMNFSTKKQGXXXXXXXXX 441 T+ + EL L+K I L D+ + R+ + DL V++ ++ +T Q Sbjct: 51 TNAAAKAELSLDKQIRRLDQDVRRIGRISRRDLEEVLDEIRSHRTATSSQSLLVIRCCGN 110 Query: 442 XXPDETPSARMALVELVWNTLKP-HTKFQVDHYNELLQAYIANNRTIVVTTFINKMLP-- 612 P+E P R ALV+ +W TL + + HYN LL+ Y+ N T F+ ++ Sbjct: 111 LVPEELPEVRTALVQEIWKTLNALNVPMNISHYNALLRVYLENEHGFAPTDFLAEIEAKG 170 Query: 613 VKPNITTYELIIRALRXAGDLNQATEVLSNMKAQNLPATENIFNSL 750 ++PN TY+ +I GD+ AT +L M+A++LP EN+FNSL Sbjct: 171 IEPNRVTYQRLIARYCQQGDIEGATRILEFMRAKSLPVNENVFNSL 216 >AF327844-1|AAK50882.1| 1412|Drosophila melanogaster bicoid mRNA stability factor protein. Length = 1412 Score = 99.1 bits (236), Expect = 6e-21 Identities = 53/166 (31%), Positives = 85/166 (51%), Gaps = 4/166 (2%) Frame = +1 Query: 265 TDRMSSEEL-LEKLIAGLSTDIHQKNRVYKNDLMRVINRVKEMNFSTKKQGXXXXXXXXX 441 T+ + EL L+K I L D+ + R+ + DL V++ ++ +T Q Sbjct: 51 TNAAAKAELSLDKQIRRLDQDVRRIGRISRRDLEEVLDEIRSHRTATSSQSLLVIRCCGN 110 Query: 442 XXPDETPSARMALVELVWNTLKP-HTKFQVDHYNELLQAYIANNRTIVVTTFINKMLP-- 612 P+E P R ALV+ +W TL + + HYN LL+ Y+ N T F+ ++ Sbjct: 111 LVPEELPEVRTALVQEIWKTLNALNVPMNISHYNALLRVYLENEHGFAPTDFLAEIEAKG 170 Query: 613 VKPNITTYELIIRALRXAGDLNQATEVLSNMKAQNLPATENIFNSL 750 ++PN TY+ +I GD+ AT +L M+A++LP EN+FNSL Sbjct: 171 IEPNRVTYQRLIARYCQQGDIEGATRILEFMRAKSLPVNENVFNSL 216 >AE014134-2933|AAF53668.2| 1412|Drosophila melanogaster CG10302-PA protein. Length = 1412 Score = 99.1 bits (236), Expect = 6e-21 Identities = 53/166 (31%), Positives = 85/166 (51%), Gaps = 4/166 (2%) Frame = +1 Query: 265 TDRMSSEEL-LEKLIAGLSTDIHQKNRVYKNDLMRVINRVKEMNFSTKKQGXXXXXXXXX 441 T+ + EL L+K I L D+ + R+ + DL V++ ++ +T Q Sbjct: 51 TNAAAKAELSLDKQIRRLDQDVRRIGRISRRDLEEVLDEIRSHRTATSSQSLLVIRCCGN 110 Query: 442 XXPDETPSARMALVELVWNTLKP-HTKFQVDHYNELLQAYIANNRTIVVTTFINKMLP-- 612 P+E P R ALV+ +W TL + + HYN LL+ Y+ N T F+ ++ Sbjct: 111 LVPEELPEVRTALVQEIWKTLNALNVPMDISHYNALLRVYLENEHGFAPTDFLAEIEAKG 170 Query: 613 VKPNITTYELIIRALRXAGDLNQATEVLSNMKAQNLPATENIFNSL 750 ++PN TY+ +I GD+ AT +L M+A++LP EN+FNSL Sbjct: 171 IEPNRVTYQRLIARYCQQGDIEGATRILEFMRAKSLPVNENVFNSL 216 >AE014296-2672|AAF49513.1| 597|Drosophila melanogaster CG4950-PA protein. Length = 597 Score = 31.5 bits (68), Expect = 1.3 Identities = 45/158 (28%), Positives = 70/158 (44%), Gaps = 6/158 (3%) Frame = +1 Query: 115 LSSLKIFKRIGQILDVRVDPMHKAINKCSVNLSSGRGNISQTVST-EFLK--NTDRMSSE 285 L+S++ IG + +R+D + I+ SVN G ISQ T LK + D Sbjct: 153 LTSIQTSVFIGANVLMRLDLSYNEISSLSVNAFCGLHTISQIYLTGNLLKELHNDIFKDN 212 Query: 286 ELLEKLI--AGLSTDIHQKNRVYKNDLMRVINRVKEMNFSTKKQGXXXXXXXXXXXPDE- 456 E LEK+ L T I + V++N + R+KE+N S + PD Sbjct: 213 EYLEKVSFEGNLLTSIQPE--VFRN-----MRRIKEVNLSNNR--------LIFIHPDTF 257 Query: 457 TPSARMALVELVWNTLKPHTKFQVDHYNELLQAYIANN 570 +A + + L +N LK FQ+ N + Q ++ NN Sbjct: 258 ADAASLENLVLSYNELK---NFQLTEKNIVHQLHLDNN 292 >BT011031-1|AAR30191.1| 703|Drosophila melanogaster RE45108p protein. Length = 703 Score = 28.7 bits (61), Expect = 8.9 Identities = 13/45 (28%), Positives = 22/45 (48%) Frame = +1 Query: 616 KPNITTYELIIRALRXAGDLNQATEVLSNMKAQNLPATENIFNSL 750 +PN+ Y +I+A GD++ A + M + L + FN L Sbjct: 255 EPNVKNYNAMIKAYGRCGDVDTAYMLADEMMERQLELNADTFNFL 299 >AY118638-1|AAM50007.1| 1775|Drosophila melanogaster SD02391p protein. Length = 1775 Score = 28.7 bits (61), Expect = 8.9 Identities = 23/84 (27%), Positives = 36/84 (42%) Frame = +1 Query: 163 RVDPMHKAINKCSVNLSSGRGNISQTVSTEFLKNTDRMSSEELLEKLIAGLSTDIHQKNR 342 RV A S SS IS S L T + +L +KL A L T H K++ Sbjct: 1633 RVSDEPSATASSSAASSSSPSKISSAGSNSELLGTTSAAGSDLKQKL-AELQTVKHSKDK 1691 Query: 343 VYKNDLMRVINRVKEMNFSTKKQG 414 V ++ + + ++ ++ KQG Sbjct: 1692 VIVDEREQRLQQMLQLQKDMAKQG 1715 >AE014298-586|AAF45910.1| 2779|Drosophila melanogaster CG6450-PC protein. Length = 2779 Score = 28.7 bits (61), Expect = 8.9 Identities = 23/84 (27%), Positives = 36/84 (42%) Frame = +1 Query: 163 RVDPMHKAINKCSVNLSSGRGNISQTVSTEFLKNTDRMSSEELLEKLIAGLSTDIHQKNR 342 RV A S SS IS S L T + +L +KL A L T H K++ Sbjct: 2637 RVSDEPSATASSSAASSSSPSKISSAGSNSELLGTTSAAGSDLKQKL-AELQTVKHSKDK 2695 Query: 343 VYKNDLMRVINRVKEMNFSTKKQG 414 V ++ + + ++ ++ KQG Sbjct: 2696 VIVDEREQRLQQMLQLQKDMAKQG 2719 >AE014296-927|AAF50798.1| 703|Drosophila melanogaster CG4611-PA protein. Length = 703 Score = 28.7 bits (61), Expect = 8.9 Identities = 13/45 (28%), Positives = 22/45 (48%) Frame = +1 Query: 616 KPNITTYELIIRALRXAGDLNQATEVLSNMKAQNLPATENIFNSL 750 +PN+ Y +I+A GD++ A + M + L + FN L Sbjct: 255 EPNVKNYNAMIKAYGRCGDVDTAYMLADEMMERQLELNADTFNFL 299 Database: fruitfly Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 24,988,368 Number of sequences in database: 53,049 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 26,844,379 Number of Sequences: 53049 Number of extensions: 476497 Number of successful extensions: 1180 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 1152 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1177 length of database: 24,988,368 effective HSP length: 83 effective length of database: 20,585,301 effective search space used: 3417159966 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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