BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0656 (750 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AL021481-4|CAA16335.1| 1083|Caenorhabditis elegans Hypothetical ... 29 2.7 AF040660-4|AAC71145.1| 323|Caenorhabditis elegans Hypothetical ... 29 3.5 Z83120-2|CAB05586.1| 883|Caenorhabditis elegans Hypothetical pr... 28 8.1 Z81585-8|CAO82068.1| 308|Caenorhabditis elegans Hypothetical pr... 28 8.1 U88169-8|AAB42237.1| 866|Caenorhabditis elegans Holocentric chr... 28 8.1 AF321299-1|AAK07638.1| 866|Caenorhabditis elegans CENP-C-like p... 28 8.1 >AL021481-4|CAA16335.1| 1083|Caenorhabditis elegans Hypothetical protein Y43F4B.6 protein. Length = 1083 Score = 29.5 bits (63), Expect = 2.7 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 1/88 (1%) Frame = +1 Query: 151 ILDVRVDPMHKAINKCSVNLSSGRGNI-SQTVSTEFLKNTDRMSSEELLEKLIAGLSTDI 327 +L +R+ ++A NK L+ R N S + L+N M EEL ++ A S + Sbjct: 664 VLQMRLTEANRA-NKTLRELNLKRANRKSSPTNASALQN---MIEEELEHEMCAQRSHWL 719 Query: 328 HQKNRVYKNDLMRVINRVKEMNFSTKKQ 411 + R ++DLM+ IN V+ M F K+ Sbjct: 720 CEDLRRQRHDLMQNINTVESMKFEGGKR 747 >AF040660-4|AAC71145.1| 323|Caenorhabditis elegans Hypothetical protein W05G11.5 protein. Length = 323 Score = 29.1 bits (62), Expect = 3.5 Identities = 18/64 (28%), Positives = 32/64 (50%) Frame = +1 Query: 205 NLSSGRGNISQTVSTEFLKNTDRMSSEELLEKLIAGLSTDIHQKNRVYKNDLMRVINRVK 384 +L + + V+TEF+KN D + + E ++LI+ I KN V + + +K Sbjct: 253 SLKQFKTELRAKVATEFIKNYDLLGAIEKADQLISSKKGVILNKNTVDEEGYKEYLELMK 312 Query: 385 EMNF 396 + NF Sbjct: 313 D-NF 315 >Z83120-2|CAB05586.1| 883|Caenorhabditis elegans Hypothetical protein R06A4.4a protein. Length = 883 Score = 27.9 bits (59), Expect = 8.1 Identities = 11/33 (33%), Positives = 20/33 (60%) Frame = +1 Query: 538 NELLQAYIANNRTIVVTTFINKMLPVKPNITTY 636 +E +Q + + T+++ T I KM+P PN+ Y Sbjct: 223 DEEVQKQLCRSLTLLLDTHIEKMMPHLPNVIEY 255 >Z81585-8|CAO82068.1| 308|Caenorhabditis elegans Hypothetical protein T05E12.9 protein. Length = 308 Score = 27.9 bits (59), Expect = 8.1 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Frame = +1 Query: 217 GRGNISQTVSTEFLKNTDRMSSEELLE-KLIAGLSTDIHQKNRVYKNDLMRVINRVKEMN 393 G+ + + FLK + +E +LI GL D ++NR +++ ++ ++K +N Sbjct: 241 GKVDFPREHQKSFLKIIEEQGLRGEIEIELIVGLYEDYVRRNRRIVENVIFLVTKLKSVN 300 Query: 394 FSTK 405 F+ K Sbjct: 301 FTQK 304 >U88169-8|AAB42237.1| 866|Caenorhabditis elegans Holocentric chromosome bindingprotein protein 4 protein. Length = 866 Score = 27.9 bits (59), Expect = 8.1 Identities = 20/80 (25%), Positives = 38/80 (47%) Frame = +1 Query: 457 TPSARMALVELVWNTLKPHTKFQVDHYNELLQAYIANNRTIVVTTFINKMLPVKPNITTY 636 TP+ RM +V+ V N + P +++ + L++ + ++ K P K TT Sbjct: 551 TPT-RMDIVDSV-NRVTPARRYEQPTFASLVKRMNMKDANRLLEETSRKNTPAKTTATTS 608 Query: 637 ELIIRALRXAGDLNQATEVL 696 +R + + +QATEV+ Sbjct: 609 SAAVRMVLEDDEEDQATEVI 628 >AF321299-1|AAK07638.1| 866|Caenorhabditis elegans CENP-C-like protein HCP-4 protein. Length = 866 Score = 27.9 bits (59), Expect = 8.1 Identities = 20/80 (25%), Positives = 38/80 (47%) Frame = +1 Query: 457 TPSARMALVELVWNTLKPHTKFQVDHYNELLQAYIANNRTIVVTTFINKMLPVKPNITTY 636 TP+ RM +V+ V N + P +++ + L++ + ++ K P K TT Sbjct: 551 TPT-RMDIVDSV-NRVTPARRYEQPTFASLVKRMNMKDANRLLEETSRKNTPAKTTATTS 608 Query: 637 ELIIRALRXAGDLNQATEVL 696 +R + + +QATEV+ Sbjct: 609 SAAVRMVLEDDEEDQATEVI 628 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,337,068 Number of Sequences: 27780 Number of extensions: 262888 Number of successful extensions: 720 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 706 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 720 length of database: 12,740,198 effective HSP length: 80 effective length of database: 10,517,798 effective search space used: 1777507862 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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