Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0656
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021481-4|CAA16335.1| 1083|Caenorhabditis elegans Hypothetical ...    29   2.7  
AF040660-4|AAC71145.1|  323|Caenorhabditis elegans Hypothetical ...    29   3.5  
Z83120-2|CAB05586.1|  883|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z81585-8|CAO82068.1|  308|Caenorhabditis elegans Hypothetical pr...    28   8.1  
U88169-8|AAB42237.1|  866|Caenorhabditis elegans Holocentric chr...    28   8.1  
AF321299-1|AAK07638.1|  866|Caenorhabditis elegans CENP-C-like p...    28   8.1  

>AL021481-4|CAA16335.1| 1083|Caenorhabditis elegans Hypothetical
           protein Y43F4B.6 protein.
          Length = 1083

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
 Frame = +1

Query: 151 ILDVRVDPMHKAINKCSVNLSSGRGNI-SQTVSTEFLKNTDRMSSEELLEKLIAGLSTDI 327
           +L +R+   ++A NK    L+  R N  S   +   L+N   M  EEL  ++ A  S  +
Sbjct: 664 VLQMRLTEANRA-NKTLRELNLKRANRKSSPTNASALQN---MIEEELEHEMCAQRSHWL 719

Query: 328 HQKNRVYKNDLMRVINRVKEMNFSTKKQ 411
            +  R  ++DLM+ IN V+ M F   K+
Sbjct: 720 CEDLRRQRHDLMQNINTVESMKFEGGKR 747


>AF040660-4|AAC71145.1|  323|Caenorhabditis elegans Hypothetical
           protein W05G11.5 protein.
          Length = 323

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +1

Query: 205 NLSSGRGNISQTVSTEFLKNTDRMSSEELLEKLIAGLSTDIHQKNRVYKNDLMRVINRVK 384
           +L   +  +   V+TEF+KN D + + E  ++LI+     I  KN V +      +  +K
Sbjct: 253 SLKQFKTELRAKVATEFIKNYDLLGAIEKADQLISSKKGVILNKNTVDEEGYKEYLELMK 312

Query: 385 EMNF 396
           + NF
Sbjct: 313 D-NF 315


>Z83120-2|CAB05586.1|  883|Caenorhabditis elegans Hypothetical
           protein R06A4.4a protein.
          Length = 883

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 538 NELLQAYIANNRTIVVTTFINKMLPVKPNITTY 636
           +E +Q  +  + T+++ T I KM+P  PN+  Y
Sbjct: 223 DEEVQKQLCRSLTLLLDTHIEKMMPHLPNVIEY 255


>Z81585-8|CAO82068.1|  308|Caenorhabditis elegans Hypothetical
           protein T05E12.9 protein.
          Length = 308

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +1

Query: 217 GRGNISQTVSTEFLKNTDRMSSEELLE-KLIAGLSTDIHQKNRVYKNDLMRVINRVKEMN 393
           G+ +  +     FLK  +       +E +LI GL  D  ++NR    +++ ++ ++K +N
Sbjct: 241 GKVDFPREHQKSFLKIIEEQGLRGEIEIELIVGLYEDYVRRNRRIVENVIFLVTKLKSVN 300

Query: 394 FSTK 405
           F+ K
Sbjct: 301 FTQK 304


>U88169-8|AAB42237.1|  866|Caenorhabditis elegans Holocentric
           chromosome bindingprotein protein 4 protein.
          Length = 866

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 20/80 (25%), Positives = 38/80 (47%)
 Frame = +1

Query: 457 TPSARMALVELVWNTLKPHTKFQVDHYNELLQAYIANNRTIVVTTFINKMLPVKPNITTY 636
           TP+ RM +V+ V N + P  +++   +  L++     +   ++     K  P K   TT 
Sbjct: 551 TPT-RMDIVDSV-NRVTPARRYEQPTFASLVKRMNMKDANRLLEETSRKNTPAKTTATTS 608

Query: 637 ELIIRALRXAGDLNQATEVL 696
              +R +    + +QATEV+
Sbjct: 609 SAAVRMVLEDDEEDQATEVI 628


>AF321299-1|AAK07638.1|  866|Caenorhabditis elegans CENP-C-like
           protein HCP-4 protein.
          Length = 866

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 20/80 (25%), Positives = 38/80 (47%)
 Frame = +1

Query: 457 TPSARMALVELVWNTLKPHTKFQVDHYNELLQAYIANNRTIVVTTFINKMLPVKPNITTY 636
           TP+ RM +V+ V N + P  +++   +  L++     +   ++     K  P K   TT 
Sbjct: 551 TPT-RMDIVDSV-NRVTPARRYEQPTFASLVKRMNMKDANRLLEETSRKNTPAKTTATTS 608

Query: 637 ELIIRALRXAGDLNQATEVL 696
              +R +    + +QATEV+
Sbjct: 609 SAAVRMVLEDDEEDQATEVI 628


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,337,068
Number of Sequences: 27780
Number of extensions: 262888
Number of successful extensions: 720
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)