Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0656
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    27   0.25 
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   5.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   7.1  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 26.6 bits (56), Expect = 0.25
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 631 TYELIIRALRXAGDLNQATEVLSNMKAQNLPATE 732
           +Y+LI R     G  N  TEV+ N + +++P T+
Sbjct: 132 SYKLIGRIAAGEGRFNTNTEVVINTEVKSIPVTK 165


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = -1

Query: 651 SYDQLISSDVRFYRQHFVDKCSHYDCSIICYISLQQLIVMIHLKFRM 511
           +Y +L+  D+RF   H V    +    II  I    ++++I  + R+
Sbjct: 22  NYTELLPIDMRFNEGHIVSIVFYSVLMIISAIGNTTVLILITCRKRV 68


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 244 STEFLKNTDRMSSEELLEKLIAGLSTDI 327
           S + + +    SSEE L++ I  L TDI
Sbjct: 344 SNQIVSDNSLSSSEEKLKQDILNLRTDI 371


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,296
Number of Sequences: 438
Number of extensions: 3269
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)