Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0650
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic hor...    24   1.4  
DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic hor...    24   1.4  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   1.8  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   3.2  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    22   5.5  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   5.5  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   7.3  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   7.3  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   7.3  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   9.7  

>EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -1

Query: 439 HSLRLIVDHLTVIVALPCAVVLFERCSLV 353
           H L  ++  + ++ ALP AV++F   S++
Sbjct: 215 HELTYLLFGMVMMYALPLAVIIFSYASIL 243


>DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -1

Query: 439 HSLRLIVDHLTVIVALPCAVVLFERCSLV 353
           H L  ++  + ++ ALP AV++F   S++
Sbjct: 215 HELTYLLFGMVMMYALPLAVIIFSYASIL 243


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -2

Query: 390 HVP-SSSLNDAPLLQGSTQIPQHFSIPDRFFSASRMSALIWSMPSSILSNCSPWSS 226
           H P ++  N  P   GS  +     +     S S ++ L  ++PS+ LS+  P+SS
Sbjct: 35  HSPCATGSNGLPAGAGSNLLCASNGLVTTLASGSSLNGLTNNVPSNGLSSSGPFSS 90


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -3

Query: 563 CADSRSWCSLDPC 525
           C +   WCS +PC
Sbjct: 96  CGEYVDWCSTNPC 108


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -3

Query: 290 ACPR*SGPCPPRFCPI--VLPGRLERPEYEC 204
           AC    GPCPP+   +  VLP  L+    +C
Sbjct: 45  ACLLSKGPCPPQGVDLKRVLPEALQTNCAKC 75


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
 Frame = +2

Query: 191 SKEAGIRTLVALDDQ-GEQLDRIEEGMDQ-INADMREAEKNLS--GMEKCCGICVLPCNK 358
           +K  G + L+ +  Q G+ L +  +G+   + A +R+    +   G EK   I      K
Sbjct: 159 TKGIGAKLLLQMGFQPGKGLGKDLQGISAPVEAHLRKGRGAIGAYGPEKSASIPKKKEVK 218

Query: 359 GASFKEDDGTWKGNDDGKVVNNQPQRVMDE 448
                E D  WK ND  K       R +D+
Sbjct: 219 EEIEDEPDHKWKKNDSSKKKTRYYYRSVDD 248


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +1

Query: 247 GQNRGGHGPDQRGHAGGREE 306
           G  RGG     RG  GG E+
Sbjct: 92  GGGRGGGRDGDRGDGGGEEK 111


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 665 SPEXSSFHLTLPCD*CG 615
           SP  SS  L +PC  CG
Sbjct: 26  SPSSSSRILDIPCKVCG 42


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 665 SPEXSSFHLTLPCD*CG 615
           SP  SS  L +PC  CG
Sbjct: 26  SPSSSSRILDIPCKVCG 42


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -3

Query: 584 NPCPRPCCADS 552
           NPC R C  DS
Sbjct: 42  NPCARKCVKDS 52


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,267
Number of Sequences: 336
Number of extensions: 3740
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)