Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0650
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.11 |ykt6||SNARE Ykt6|Schizosaccharomyces pombe|chr 2|||...    31   0.12 
SPAC6F12.03c |fsv1||SNARE Fsv1|Schizosaccharomyces pombe|chr 1||...    29   0.48 
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    28   1.1  
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    28   1.5  
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    27   2.6  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    27   2.6  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    27   2.6  
SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc...    27   2.6  
SPAC4H3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   4.5  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    26   6.0  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    26   6.0  
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    25   7.9  
SPAC823.05c |tlg2||SNARE Tlg2|Schizosaccharomyces pombe|chr 1|||...    25   7.9  
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc...    25   7.9  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    25   7.9  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    25   7.9  

>SPBC13G1.11 |ykt6||SNARE Ykt6|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 197

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 18/84 (21%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
 Frame = +2

Query: 83  ENGGPRSELEQLQMRAGQVTD-ESLESTRRMMQLCEESKEAGIRTLVALDDQGEQLDRIE 259
           E+G       +L     +  D +  ++  R+ Q  +E+K+   +T+ ++  +GE+LD + 
Sbjct: 111 ESGAVTLSFPELDTYLSKYQDPKQADTIMRVQQELDETKDVLHKTIESVLARGEKLDDLI 170

Query: 260 EGMDQINADMREAEKNLSGMEKCC 331
           +  D ++   R   K+      CC
Sbjct: 171 QRSDNLSTQSRMFYKSAKKQNSCC 194


>SPAC6F12.03c |fsv1||SNARE Fsv1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 247

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
 Frame = +2

Query: 509 DEMEENMGQVNTMIGNLRNMALDMGSEL-------ENQNRQIDRINRKGESNETRXTLAN 667
           +E EE++G +   +   + M   M +EL       +N N   DRI R+ +  + R    +
Sbjct: 163 NEQEESLGGIEASVQRQKRMGYAMNTELSEQNVLLDNMNNDADRIERRFDHAKNRLNKVS 222

Query: 668 QRAHE 682
           ++A +
Sbjct: 223 RKAKQ 227


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 284 DMREAEKNLSGMEKCCGICVLPC 352
           ++ EA KN S    C   CVLPC
Sbjct: 788 NLTEARKNFSNYRDCLENCVLPC 810


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +3

Query: 45  KNNKXCLQQYLLPKMAGLAASSSSCKCEPVRLP 143
           KN+   LQ Y  P     A+SSSS K  PV +P
Sbjct: 246 KNSAWPLQPYSPPANETPASSSSSAKARPVSVP 278


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 28/98 (28%), Positives = 40/98 (40%)
 Frame = +2

Query: 131 GQVTDESLESTRRMMQLCEESKEAGIRTLVALDDQGEQLDRIEEGMDQINADMREAEKNL 310
           G  T+ S E   R   +C+++ + GI+T        + L  I  G +Q+ A +   +  L
Sbjct: 379 GSCTNSSYEDMSRAASICQQAIDKGIKT--------KSLFTITPGSEQVRATLTR-DGQL 429

Query: 311 SGMEKCCGICVLPCNKGASFKEDDGTWKGNDDGKVVNN 424
             M K  GI VL    G       G WK  D  K   N
Sbjct: 430 DTMRKAGGI-VLANACGPCI----GQWKRTDVKKGEKN 462


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 18/50 (36%), Positives = 20/50 (40%)
 Frame = -3

Query: 341 RRSRNISPSRTDSSRPPACPR*SGPCPPRFCPIVLPGRLERPEYECRPPC 192
           RRSR +SP  T  S P    R   P P    P+V P    R      P C
Sbjct: 387 RRSRPVSPCSTAPSSPTFSTRSFSPTPD-VTPLVTPAHSPRLRPMDDPSC 435


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +2

Query: 395 GNDDGKVVNNQPQRVMDERNGIGPQAGYIGRITNDAREDEMEENMGQVN 541
           G+  G++ + + +R + ERNG G + G   +    + EDE+ E   Q++
Sbjct: 24  GSIHGEITDVKRRR-LSERNGYGDKKGSSSKEKTSSFEDELAEYASQLD 71


>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
           Nse5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 33  LGANKNNKXCLQQYLLPKMAGLAASSSSCKCE 128
           LGA+ N + CL QY+L K  G+  +    +CE
Sbjct: 266 LGAS-NLRYCLSQYILMKGIGIGINIRHTRCE 296


>SPAC4H3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/53 (18%), Positives = 30/53 (56%)
 Frame = +2

Query: 155 ESTRRMMQLCEESKEAGIRTLVALDDQGEQLDRIEEGMDQINADMREAEKNLS 313
           E+  ++ +  E++  A     + L+  G  +  + EG++++++D+R  + +L+
Sbjct: 13  ETRAQLYKELEDALNANQEKKIGLEQMGIIVQLVTEGLNEVSSDIRNYQASLT 65


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 545 MIGNLRNMALDMGSELENQNRQIDRINRKGES 640
           +I  LRN    + + LENQN++ D +  + +S
Sbjct: 92  LISVLRNENESLKTNLENQNKRFDALTTENQS 123


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 524 NMGQVNTMIGNLRNMALDMGSELENQNRQIDR 619
           N G +N  + NL+NM LD  +    ++ ++DR
Sbjct: 604 NSGALNETVQNLKNMELDDPAPQPAKHSRVDR 635


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 352 ARQHADPATFLHPGQILLGLPHVRVDLVHALLDSVQLF 239
           +R H + AT+    Q L  LPH +VD    L+    L+
Sbjct: 273 SRVHTNAATYRVIIQTLQNLPHTKVDAAFGLVSLFILY 310


>SPAC823.05c |tlg2||SNARE Tlg2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
 Frame = +2

Query: 98  RSELEQLQMRAGQVTDE-SLESTRRMMQLCEESKEAG--IRTL-VALDDQGEQLDRIEEG 265
           +S ++Q+ +   Q  DE ++   R + ++ E   E     + L V + +QG  +DRI+  
Sbjct: 191 QSTIQQVALMEEQGEDEQAIRHERAVAKIAEGIIELAQMFQDLQVLVIEQGALVDRIDFN 250

Query: 266 MDQINADMREAEKNL 310
           ++Q     + AEK L
Sbjct: 251 IEQTQVHAKSAEKEL 265


>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 387 VPSSSLNDAPLLQGSTQIPQHFSIPDRFFSASRMSALI 274
           VP + ++D  L+ GST+IP+   +   FF    ++  I
Sbjct: 328 VPKADVHDIVLVGGSTRIPKVQRLVSDFFDGRALNKSI 365


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/60 (20%), Positives = 30/60 (50%)
 Frame = +2

Query: 494 NDAREDEMEENMGQVNTMIGNLRNMALDMGSELENQNRQIDRINRKGESNETRXTLANQR 673
           N  RE E+ +    +N  +GN  N+  D+ ++L  ++ ++  +  +   ++ +    N+R
Sbjct: 778 NTIREAELSKKA--LNDNLGNKENIISDLKNKLSEESTRLQELQSQLNQDKNQIETLNER 835


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 21/69 (30%), Positives = 31/69 (44%)
 Frame = -2

Query: 270 SMPSSILSNCSPWSSRATRVRMPASLLSSHSCIIRLVDSNDSSVT*PARICSCSSSLRGP 91
           S  +S  S+ SP SS  T    P+S  SS S       S+ SS +  +   S SSS    
Sbjct: 133 SSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 192

Query: 90  PFSAGGTAA 64
             S+  +++
Sbjct: 193 SSSSSSSSS 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,826,972
Number of Sequences: 5004
Number of extensions: 58882
Number of successful extensions: 175
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)