BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0650 (700 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC13G1.11 |ykt6||SNARE Ykt6|Schizosaccharomyces pombe|chr 2|||... 31 0.12 SPAC6F12.03c |fsv1||SNARE Fsv1|Schizosaccharomyces pombe|chr 1||... 29 0.48 SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 28 1.1 SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 28 1.5 SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch... 27 2.6 SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 27 2.6 SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti... 27 2.6 SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc... 27 2.6 SPAC4H3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 4.5 SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 26 6.0 SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 26 6.0 SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr... 25 7.9 SPAC823.05c |tlg2||SNARE Tlg2|Schizosaccharomyces pombe|chr 1|||... 25 7.9 SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 25 7.9 SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 25 7.9 SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 7.9 >SPBC13G1.11 |ykt6||SNARE Ykt6|Schizosaccharomyces pombe|chr 2|||Manual Length = 197 Score = 31.5 bits (68), Expect = 0.12 Identities = 18/84 (21%), Positives = 39/84 (46%), Gaps = 1/84 (1%) Frame = +2 Query: 83 ENGGPRSELEQLQMRAGQVTD-ESLESTRRMMQLCEESKEAGIRTLVALDDQGEQLDRIE 259 E+G +L + D + ++ R+ Q +E+K+ +T+ ++ +GE+LD + Sbjct: 111 ESGAVTLSFPELDTYLSKYQDPKQADTIMRVQQELDETKDVLHKTIESVLARGEKLDDLI 170 Query: 260 EGMDQINADMREAEKNLSGMEKCC 331 + D ++ R K+ CC Sbjct: 171 QRSDNLSTQSRMFYKSAKKQNSCC 194 >SPAC6F12.03c |fsv1||SNARE Fsv1|Schizosaccharomyces pombe|chr 1|||Manual Length = 247 Score = 29.5 bits (63), Expect = 0.48 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 7/65 (10%) Frame = +2 Query: 509 DEMEENMGQVNTMIGNLRNMALDMGSEL-------ENQNRQIDRINRKGESNETRXTLAN 667 +E EE++G + + + M M +EL +N N DRI R+ + + R + Sbjct: 163 NEQEESLGGIEASVQRQKRMGYAMNTELSEQNVLLDNMNNDADRIERRFDHAKNRLNKVS 222 Query: 668 QRAHE 682 ++A + Sbjct: 223 RKAKQ 227 >SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor Ste6|Schizosaccharomyces pombe|chr 3|||Manual Length = 911 Score = 28.3 bits (60), Expect = 1.1 Identities = 11/23 (47%), Positives = 13/23 (56%) Frame = +2 Query: 284 DMREAEKNLSGMEKCCGICVLPC 352 ++ EA KN S C CVLPC Sbjct: 788 NLTEARKNFSNYRDCLENCVLPC 810 >SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces pombe|chr 2|||Manual Length = 522 Score = 27.9 bits (59), Expect = 1.5 Identities = 15/33 (45%), Positives = 18/33 (54%) Frame = +3 Query: 45 KNNKXCLQQYLLPKMAGLAASSSSCKCEPVRLP 143 KN+ LQ Y P A+SSSS K PV +P Sbjct: 246 KNSAWPLQPYSPPANETPASSSSSAKARPVSVP 278 >SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr 1|||Manual Length = 778 Score = 27.1 bits (57), Expect = 2.6 Identities = 28/98 (28%), Positives = 40/98 (40%) Frame = +2 Query: 131 GQVTDESLESTRRMMQLCEESKEAGIRTLVALDDQGEQLDRIEEGMDQINADMREAEKNL 310 G T+ S E R +C+++ + GI+T + L I G +Q+ A + + L Sbjct: 379 GSCTNSSYEDMSRAASICQQAIDKGIKT--------KSLFTITPGSEQVRATLTR-DGQL 429 Query: 311 SGMEKCCGICVLPCNKGASFKEDDGTWKGNDDGKVVNN 424 M K GI VL G G WK D K N Sbjct: 430 DTMRKAGGI-VLANACGPCI----GQWKRTDVKKGEKN 462 >SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces pombe|chr 2|||Manual Length = 565 Score = 27.1 bits (57), Expect = 2.6 Identities = 18/50 (36%), Positives = 20/50 (40%) Frame = -3 Query: 341 RRSRNISPSRTDSSRPPACPR*SGPCPPRFCPIVLPGRLERPEYECRPPC 192 RRSR +SP T S P R P P P+V P R P C Sbjct: 387 RRSRPVSPCSTAPSSPTFSTRSFSPTPD-VTPLVTPAHSPRLRPMDDPSC 435 >SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1086 Score = 27.1 bits (57), Expect = 2.6 Identities = 14/49 (28%), Positives = 27/49 (55%) Frame = +2 Query: 395 GNDDGKVVNNQPQRVMDERNGIGPQAGYIGRITNDAREDEMEENMGQVN 541 G+ G++ + + +R + ERNG G + G + + EDE+ E Q++ Sbjct: 24 GSIHGEITDVKRRR-LSERNGYGDKKGSSSKEKTSSFEDELAEYASQLD 71 >SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosaccharomyces pombe|chr 2|||Manual Length = 388 Score = 27.1 bits (57), Expect = 2.6 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +3 Query: 33 LGANKNNKXCLQQYLLPKMAGLAASSSSCKCE 128 LGA+ N + CL QY+L K G+ + +CE Sbjct: 266 LGAS-NLRYCLSQYILMKGIGIGINIRHTRCE 296 >SPAC4H3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 131 Score = 26.2 bits (55), Expect = 4.5 Identities = 10/53 (18%), Positives = 30/53 (56%) Frame = +2 Query: 155 ESTRRMMQLCEESKEAGIRTLVALDDQGEQLDRIEEGMDQINADMREAEKNLS 313 E+ ++ + E++ A + L+ G + + EG++++++D+R + +L+ Sbjct: 13 ETRAQLYKELEDALNANQEKKIGLEQMGIIVQLVTEGLNEVSSDIRNYQASLT 65 >SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1727 Score = 25.8 bits (54), Expect = 6.0 Identities = 11/32 (34%), Positives = 19/32 (59%) Frame = +2 Query: 545 MIGNLRNMALDMGSELENQNRQIDRINRKGES 640 +I LRN + + LENQN++ D + + +S Sbjct: 92 LISVLRNENESLKTNLENQNKRFDALTTENQS 123 >SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component |Schizosaccharomyces pombe|chr 3|||Manual Length = 809 Score = 25.8 bits (54), Expect = 6.0 Identities = 11/32 (34%), Positives = 19/32 (59%) Frame = +2 Query: 524 NMGQVNTMIGNLRNMALDMGSELENQNRQIDR 619 N G +N + NL+NM LD + ++ ++DR Sbjct: 604 NSGALNETVQNLKNMELDDPAPQPAKHSRVDR 635 >SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr 2|||Manual Length = 877 Score = 25.4 bits (53), Expect = 7.9 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = -1 Query: 352 ARQHADPATFLHPGQILLGLPHVRVDLVHALLDSVQLF 239 +R H + AT+ Q L LPH +VD L+ L+ Sbjct: 273 SRVHTNAATYRVIIQTLQNLPHTKVDAAFGLVSLFILY 310 >SPAC823.05c |tlg2||SNARE Tlg2|Schizosaccharomyces pombe|chr 1|||Manual Length = 301 Score = 25.4 bits (53), Expect = 7.9 Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 4/75 (5%) Frame = +2 Query: 98 RSELEQLQMRAGQVTDE-SLESTRRMMQLCEESKEAG--IRTL-VALDDQGEQLDRIEEG 265 +S ++Q+ + Q DE ++ R + ++ E E + L V + +QG +DRI+ Sbjct: 191 QSTIQQVALMEEQGEDEQAIRHERAVAKIAEGIIELAQMFQDLQVLVIEQGALVDRIDFN 250 Query: 266 MDQINADMREAEKNL 310 ++Q + AEK L Sbjct: 251 IEQTQVHAKSAEKEL 265 >SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces pombe|chr 2|||Manual Length = 613 Score = 25.4 bits (53), Expect = 7.9 Identities = 12/38 (31%), Positives = 21/38 (55%) Frame = -2 Query: 387 VPSSSLNDAPLLQGSTQIPQHFSIPDRFFSASRMSALI 274 VP + ++D L+ GST+IP+ + FF ++ I Sbjct: 328 VPKADVHDIVLVGGSTRIPKVQRLVSDFFDGRALNKSI 365 >SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1044 Score = 25.4 bits (53), Expect = 7.9 Identities = 12/60 (20%), Positives = 30/60 (50%) Frame = +2 Query: 494 NDAREDEMEENMGQVNTMIGNLRNMALDMGSELENQNRQIDRINRKGESNETRXTLANQR 673 N RE E+ + +N +GN N+ D+ ++L ++ ++ + + ++ + N+R Sbjct: 778 NTIREAELSKKA--LNDNLGNKENIISDLKNKLSEESTRLQELQSQLNQDKNQIETLNER 835 >SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 374 Score = 25.4 bits (53), Expect = 7.9 Identities = 21/69 (30%), Positives = 31/69 (44%) Frame = -2 Query: 270 SMPSSILSNCSPWSSRATRVRMPASLLSSHSCIIRLVDSNDSSVT*PARICSCSSSLRGP 91 S +S S+ SP SS T P+S SS S S+ SS + + S SSS Sbjct: 133 SSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 192 Query: 90 PFSAGGTAA 64 S+ +++ Sbjct: 193 SSSSSSSSS 201 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,826,972 Number of Sequences: 5004 Number of extensions: 58882 Number of successful extensions: 175 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 168 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 175 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 323158234 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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