Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0650
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    25   0.91 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.8  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   8.5  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 440 MDERNGIGPQAGYIGRITNDAREDEMEENMGQVNTM 547
           M   N    Q   +  +TND R D+M    G++N++
Sbjct: 1   MLSNNSSMTQTELLQELTNDCRYDKMTRPPGEINSI 36


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 13/61 (21%), Positives = 31/61 (50%)
 Frame = +2

Query: 137 VTDESLESTRRMMQLCEESKEAGIRTLVALDDQGEQLDRIEEGMDQINADMREAEKNLSG 316
           + D S+    R + L    +   ++  +ALD +  +  ++EE M +++ +M+  ++ L  
Sbjct: 340 INDLSMHDFSRDLMLAGTQQSVELK--LALDQEQLKSKKLEESMRKLDEEMKRTDELLYQ 397

Query: 317 M 319
           M
Sbjct: 398 M 398


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 165 LVDSNDSSVT*PARICSCSSSLRGPPFSAGGTAAGXP 55
           +V++N S    P    + SSS    P + G  AAG P
Sbjct: 504 VVETNSSPSPNPRIASAPSSSTSSSPPAKGAAAAGQP 540


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
 Frame = -3

Query: 218 PEYECRPPCSPHI-VASYALW 159
           P Y CR  CS ++ V+   +W
Sbjct: 49  PSYACRGRCSSYLQVSGSKIW 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,020
Number of Sequences: 438
Number of extensions: 4415
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)