Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0649
         (569 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5DID3-2 Cluster: Isoform 2 of Q5DID3 ; n=5; Eutheria|R...    33   3.6  
UniRef50_Q8LLE5 Cluster: Coiled-coil protein; n=2; core eudicoty...    33   3.6  
UniRef50_Q6EM02 Cluster: Beta-galactosidase; n=7; Magnoliophyta|...    33   3.6  

>UniRef50_Q5DID3-2 Cluster: Isoform 2 of Q5DID3 ; n=5; Eutheria|Rep:
           Isoform 2 of Q5DID3 - Mus musculus (Mouse)
          Length = 1348

 Score = 33.5 bits (73), Expect = 3.6
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = -2

Query: 142 PFSSQTSDTTSVRL*SASTGITMNGYKTLNKNSKENHPKT 23
           P   + S TT V + +ASTGIT  G +TL ++    HP++
Sbjct: 551 PTGDELSVTTKVTVPAASTGITTFGPETLTESLSSKHPRS 590


>UniRef50_Q8LLE5 Cluster: Coiled-coil protein; n=2; core
           eudicotyledons|Rep: Coiled-coil protein - Solanum
           lycopersicum (Tomato) (Lycopersicon esculentum)
          Length = 582

 Score = 33.5 bits (73), Expect = 3.6
 Identities = 20/47 (42%), Positives = 25/47 (53%)
 Frame = -2

Query: 145 SPFSSQTSDTTSVRL*SASTGITMNGYKTLNKNSKENHPKTYTIDDK 5
           SP SS +S T+S     ASTG + NG+  L   SK   P    I+DK
Sbjct: 538 SPASSSSSSTSSTT--QASTGKSKNGFGKLFSRSKSGVPTLKVIEDK 582


>UniRef50_Q6EM02 Cluster: Beta-galactosidase; n=7;
           Magnoliophyta|Rep: Beta-galactosidase - Sandersonia
           aurantiaca (Christmas-bells) (Chinese-lantern lily)
          Length = 826

 Score = 33.5 bits (73), Expect = 3.6
 Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
 Frame = -3

Query: 462 FDSXLPLXXYNFXLPXSFKHFTNV*RLIALKVL*YCT-RLVFQYSAVITMRTNLLSNVGQ 286
           +D   PL  Y       + H T++ + I L     C   LV  Y  V ++  N  SNV +
Sbjct: 311 YDYDAPLDEYGMLRQPKYGHLTDLHKAIKL-----CEPALVSGYPVVTSLGNNQESNVFR 365

Query: 285 VTSGLCSAQQFSLLVVYD-RYFCVRTFEG 202
             SG C+A     L  YD +Y+   TF G
Sbjct: 366 SNSGACAA----FLANYDTKYYATVTFNG 390


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 476,002,722
Number of Sequences: 1657284
Number of extensions: 8307868
Number of successful extensions: 19524
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19518
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 38738010471
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)