Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0649
         (569 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0289 + 13972020-13972077,13972444-13973301,13973850-139742...    29   3.4  
08_01_0963 - 9661699-9661760,9662095-9662818,9662860-9663265,966...    27   8.0  

>04_03_0289 +
           13972020-13972077,13972444-13973301,13973850-13974235,
           13974249-13974323,13975824-13976139,13976284-13977113
          Length = 840

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +2

Query: 173 SKLSFSTTVCPSKVLTQK*RSYTTNKENCCAEHKPDVTWPTFESKLVR 316
           S +   T  CP++ +T+K      N   CC     + T   F+ K V+
Sbjct: 168 SAVRLCTVTCPNEEITEKVARQNCNGTGCCTIELFEATLSAFQFKFVQ 215


>08_01_0963 -
           9661699-9661760,9662095-9662818,9662860-9663265,
           9663488-9665037
          Length = 913

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 213 TFEGHTVVEKESFEPNKCLSKCAVPSAHKQATPRLCGCS 97
           T+E   +++  SFE NK LS+  +PS+  + +    G S
Sbjct: 32  TYEAEDILDLASFEGNKLLSQNPLPSSSSRNSTGCTGFS 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,679,002
Number of Sequences: 37544
Number of extensions: 229035
Number of successful extensions: 490
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)