Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0649
         (569 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23524-3|AAC46823.2|  257|Caenorhabditis elegans Mirp k channel ...    29   1.8  
U23524-2|ABD63241.1|  303|Caenorhabditis elegans Mirp k channel ...    29   1.8  
AF541978-1|AAO65851.1|  256|Caenorhabditis elegans MPS-1 protein.      29   1.8  
U40060-4|AAY86193.1|  406|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z82060-3|CAB04883.1|  206|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>U23524-3|AAC46823.2|  257|Caenorhabditis elegans Mirp k channel
           accessory subunitprotein 1, isoform a protein.
          Length = 257

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/41 (34%), Positives = 27/41 (65%)
 Frame = -2

Query: 124 SDTTSVRL*SASTGITMNGYKTLNKNSKENHPKTYTIDDKA 2
           S +T++ + S+S+  +MN     N NS +++P+TY++D  A
Sbjct: 198 SSSTAIPM-SSSSSSSMNSLIEPNMNSIKSNPRTYSLDTNA 237


>U23524-2|ABD63241.1|  303|Caenorhabditis elegans Mirp k channel
           accessory subunitprotein 1, isoform b protein.
          Length = 303

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/41 (34%), Positives = 27/41 (65%)
 Frame = -2

Query: 124 SDTTSVRL*SASTGITMNGYKTLNKNSKENHPKTYTIDDKA 2
           S +T++ + S+S+  +MN     N NS +++P+TY++D  A
Sbjct: 198 SSSTAIPM-SSSSSSSMNSLIEPNMNSIKSNPRTYSLDTNA 237


>AF541978-1|AAO65851.1|  256|Caenorhabditis elegans MPS-1 protein.
          Length = 256

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/41 (34%), Positives = 27/41 (65%)
 Frame = -2

Query: 124 SDTTSVRL*SASTGITMNGYKTLNKNSKENHPKTYTIDDKA 2
           S +T++ + S+S+  +MN     N NS +++P+TY++D  A
Sbjct: 198 SSSTAIPM-SSSSSSSMNSLIEPNMNSIKSNPRTYSLDTNA 237


>U40060-4|AAY86193.1|  406|Caenorhabditis elegans Hypothetical
           protein F38B6.8 protein.
          Length = 406

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -1

Query: 188 KKRVSN-QTNVFPSAQSLQLTNKRHHVCAVVVSIHRHHNEWLQN 60
           K  +SN +T +  ++Q+L  T    HV   V+ ++ +HN WLQN
Sbjct: 71  KLEISNDETVILHTSQTLFETPVHSHVDTNVLRVY-YHNSWLQN 113


>Z82060-3|CAB04883.1|  206|Caenorhabditis elegans Hypothetical
           protein T27F6.4 protein.
          Length = 206

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = -1

Query: 272 YVRHSSFPCW*YTIATSVSG--PLKDTLL-LKKRVSNQTNVFPSAQSLQLTNKRHHVCAV 102
           YV+H        + ++ +SG  P+  TLL LKK+  ++ NV  + +  + T   HH+ +V
Sbjct: 52  YVQHLEIKAKESSQSSVISGGVPVPVTLLELKKKDRSEKNVVTNLKYRKPT-ANHHLDSV 110

Query: 101 VVSIHRHHNEWL 66
             S   HH+  L
Sbjct: 111 HSSSEHHHHHHL 122


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,357,262
Number of Sequences: 27780
Number of extensions: 216439
Number of successful extensions: 538
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)