Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0649
         (569 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61770.1 68414.m06966 DNAJ heat shock N-terminal domain-conta...    28   3.8  
At2g24650.1 68415.m02944 transcriptional factor B3 family protei...    27   6.7  
At1g57670.1 68414.m06544 Toll-Interleukin-Resistance (TIR) domai...    27   6.7  
At3g27510.1 68416.m03439 DC1 domain-containing protein contains ...    27   8.8  

>At1g61770.1 68414.m06966 DNAJ heat shock N-terminal
          domain-containing protein similar to SP|Q9UBS4 DnaJ
          homolog subfamily B member 11 precursor Homo sapiens;
          contains Pfam profile PF00226 DnaJ domain
          Length = 300

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 17 CISFWMIFFRIFIQSFVTIHCDAGGC 94
          C++  ++F  +F+QS   I+C A  C
Sbjct: 10 CLALILLFLSLFVQSSTAIYCGAEDC 35


>At2g24650.1 68415.m02944 transcriptional factor B3 family protein
           low similarity to reproductive meristem gene 1 from
           [Brassica oleracea var. botrytis] GI:3170424,
           [Arabidopsis thaliana] GI:13604227; contains Pfam
           profile PF02362: B3 DNA binding domain
          Length = 1440

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = +2

Query: 191 TTVCPSKVLTQK*RSYTTNKENCCAEHKPDVTWPTFESKLVRIVITAEYWKTKRVQY*ST 370
           TT   S + T+   S    KE+  +EHK   + PT ++++V   +T E  K  ++   S 
Sbjct: 703 TTPMLSLLRTEFRSSKANEKESISSEHKTRESSPTIKNRIVTPALTPEDVKACKLVTSSN 762

Query: 371 FS 376
           +S
Sbjct: 763 YS 764


>At1g57670.1 68414.m06544 Toll-Interleukin-Resistance (TIR)
           domain-containing protein domain signature TIR exists,
           suggestive of a disease resistance protein.
          Length = 387

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 304 TFKCRPSYVWLMFGTAVFLVGSIRSLL 224
           TF    +  WL FG+AV L+GS+  ++
Sbjct: 282 TFNIALALPWLWFGSAVELIGSVLGII 308



 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 304 TFKCRPSYVWLMFGTAVFLVGSIRSLL 224
           TF    +  WL FG+AV LVG++  LL
Sbjct: 327 TFYVPLALPWLWFGSAVELVGAVLGLL 353


>At3g27510.1 68416.m03439 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 566

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -2

Query: 406 TLH*CLTSDCTKSTLILH--SFSFPVLRGDHDAH*FTFKCR 290
           T + CL S C+    ILH  S + P++ G HD H    K R
Sbjct: 367 TFYKCLESKCS---FILHETSITVPLIHGSHDHHLLYLKQR 404


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,495,670
Number of Sequences: 28952
Number of extensions: 191902
Number of successful extensions: 441
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)