BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0648 (750 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 31 0.13 SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 27 2.9 SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 27 3.8 SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe... 27 3.8 SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 26 5.0 SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |... 26 5.0 SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 26 5.0 SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe... 26 6.6 SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 26 6.6 SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo... 25 8.7 SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr 1||... 25 8.7 SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 25 8.7 >SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosaccharomyces pombe|chr 1|||Manual Length = 1318 Score = 31.5 bits (68), Expect = 0.13 Identities = 23/105 (21%), Positives = 55/105 (52%) Frame = +3 Query: 69 KVPEAEDKPLNVVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLK 248 K P +E P V+ L+ + I +I +++ + ++ +VV+ P + ++ +I+ + Sbjct: 377 KAPTSEAPPKGHVKQLAKQLGNIYMPQSINNVEPTSHSSISKVVN-PSEKVISKIERACL 435 Query: 249 SDLESLKCRMKMRKSRGL*SI*EIPGPRSIKSTKHRILNTTKMLK 383 + ++ +KM K+ L P PR++ +T+H+I + ++ K Sbjct: 436 AGNGNVHPSIKMEKNLEL-----NPHPRTLNATEHKINSRIQVSK 475 >SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosaccharomyces pombe|chr 2|||Manual Length = 515 Score = 27.1 bits (57), Expect = 2.9 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%) Frame = +2 Query: 287 EIKRPLVDLRNPGPPQHQEHETQNPEHHEDA--EKIVSSVKNDINTAE 424 E +P D RN GP Q + + + PE H ++ E+ + + ++ N E Sbjct: 148 EEPKPSGDFRNEGPKQCDDSKIEKPELHVNSKIEEPIHRIDSEHNEPE 195 >SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pombe|chr 2|||Manual Length = 827 Score = 26.6 bits (56), Expect = 3.8 Identities = 9/29 (31%), Positives = 18/29 (62%) Frame = +2 Query: 329 PQHQEHETQNPEHHEDAEKIVSSVKNDIN 415 P +++ T++ E HED + V +++D N Sbjct: 24 PNNKKSRTRSTESHEDRQAKVQKIQSDFN 52 >SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe|chr 2|||Manual Length = 466 Score = 26.6 bits (56), Expect = 3.8 Identities = 12/36 (33%), Positives = 18/36 (50%) Frame = +3 Query: 318 IPGPRSIKSTKHRILNTTKMLKKSFLPSKMTLTQRK 425 +P P S+ HR LN K+ F P + T++K Sbjct: 224 LPSPVSLSRYMHRSLNWKKLYDIGFAPFPLGSTEKK 259 >SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 754 Score = 26.2 bits (55), Expect = 5.0 Identities = 25/107 (23%), Positives = 44/107 (41%) Frame = +3 Query: 69 KVPEAEDKPLNVVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLK 248 ++ E E V++ E+EL +K +N ++ E+ P + + K Sbjct: 646 EIEELEPVVQKVLDEEKQERELKIAERDLKKGENIMKYGD-EIRSRPARTWFQSEKDKQA 704 Query: 249 SDLESLKCRMKMRKSRGL*SI*EIPGPRSIKSTKHRILNTTKMLKKS 389 S K + + K + E+P R+ K TK+ L+ K KKS Sbjct: 705 SKASEAKDKKSLAKRKKQMEKEEVP--RAYKKTKNDRLSNKKSTKKS 749 >SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |Schizosaccharomyces pombe|chr 1|||Manual Length = 777 Score = 26.2 bits (55), Expect = 5.0 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 1/91 (1%) Frame = +2 Query: 386 IVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINELQASLQHFQENFGAQIQKL-N 562 ++SS N + + A G +++ D + EQ+ L + E FG ++Q++ Sbjct: 1 MISSFSNGFWSKDYAT--GVKKLFDCLDNGVEENEQVKNLLKLYKEANEEFGEKLQEITK 58 Query: 563 ETLHFIKPADTIAAPSVXETQNKASFETIES 655 E L KP +T T NKA FE + S Sbjct: 59 ECLKGKKPENT----EDGATSNKA-FEGLRS 84 >SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component |Schizosaccharomyces pombe|chr 3|||Manual Length = 809 Score = 26.2 bits (55), Expect = 5.0 Identities = 13/28 (46%), Positives = 15/28 (53%) Frame = -1 Query: 690 PLLKFVFKDLRPDSIVSKEALFCVSSTE 607 PL +FKDLRP E+LF TE Sbjct: 205 PLKDLLFKDLRPVQTKELESLFAELPTE 232 >SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe|chr 1|||Manual Length = 727 Score = 25.8 bits (54), Expect = 6.6 Identities = 15/56 (26%), Positives = 23/56 (41%) Frame = +2 Query: 326 PPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQ 493 PP H ++ TQ HEDA+ S + + I R ++ G + EQ Sbjct: 609 PPLHLKNTTQTNNAHEDAQSSNLSQNHSLFYERIPQRPSYRIEKQNKGIYEDENEQ 664 >SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 750 Score = 25.8 bits (54), Expect = 6.6 Identities = 9/29 (31%), Positives = 18/29 (62%) Frame = +2 Query: 485 TEQINELQASLQHFQENFGAQIQKLNETL 571 + ++N+LQ ++ + F QI+KLN + Sbjct: 111 SHEVNDLQTDRENLKHQFEDQIEKLNSEI 139 >SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharomyces pombe|chr 2|||Manual Length = 488 Score = 25.4 bits (53), Expect = 8.7 Identities = 13/51 (25%), Positives = 26/51 (50%) Frame = +2 Query: 431 LRQGFQEVSDGIGKWYARTEQINELQASLQHFQENFGAQIQKLNETLHFIK 583 + Q E+ D + K ++IN + + + F+E + KLN+ L +I+ Sbjct: 9 MEQSVPELEDLLEKNIFNRDEINNIIKTRRVFEEKLARRQVKLNDFLSYIQ 59 >SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr 1|||Manual Length = 237 Score = 25.4 bits (53), Expect = 8.7 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 6/78 (7%) Frame = +2 Query: 464 IGKWYARTEQINELQASLQHFQENFGAQIQKLNETL------HFIKPADTIAAPSVXETQ 625 + K++ + A +HF EN+ + K E + HFI + + + Sbjct: 29 VSKFHPVETLMEAYNAGQRHFGENYMQEFLKKVELMPDDVQWHFIGSLQSSKCKKIASVK 88 Query: 626 NKASFETIESGLKSLKTN 679 N S ETI++ K+ N Sbjct: 89 NLYSIETIDTEKKARLVN 106 >SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces pombe|chr 2|||Manual Length = 199 Score = 25.4 bits (53), Expect = 8.7 Identities = 15/48 (31%), Positives = 25/48 (52%) Frame = +3 Query: 321 PGPRSIKSTKHRILNTTKMLKKSFLPSKMTLTQRKSLFVKASRKCQTV 464 P + + K I +K++ + LP+ +T Q K LFVK+ C+ V Sbjct: 39 PAVNTASALKSVISEESKIIVSN-LPTDVTEAQVKELFVKSIGPCKRV 85 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,492,753 Number of Sequences: 5004 Number of extensions: 47429 Number of successful extensions: 222 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 211 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 222 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 357280532 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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