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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0648
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    31   0.13 
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar...    27   2.9  
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    27   3.8  
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    27   3.8  
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch...    26   5.0  
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    26   5.0  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    26   5.0  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    26   6.6  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    26   6.6  
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo...    25   8.7  
SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr 1||...    25   8.7  
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ...    25   8.7  

>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 23/105 (21%), Positives = 55/105 (52%)
 Frame = +3

Query: 69  KVPEAEDKPLNVVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLK 248
           K P +E  P   V+ L+ +   I    +I +++ +  ++  +VV+ P + ++ +I+ +  
Sbjct: 377 KAPTSEAPPKGHVKQLAKQLGNIYMPQSINNVEPTSHSSISKVVN-PSEKVISKIERACL 435

Query: 249 SDLESLKCRMKMRKSRGL*SI*EIPGPRSIKSTKHRILNTTKMLK 383
           +   ++   +KM K+  L      P PR++ +T+H+I +  ++ K
Sbjct: 436 AGNGNVHPSIKMEKNLEL-----NPHPRTLNATEHKINSRIQVSK 475


>SPBC26H8.09c |snf59||SWI/SNF complex subunit
           Snf59|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 515

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +2

Query: 287 EIKRPLVDLRNPGPPQHQEHETQNPEHHEDA--EKIVSSVKNDINTAE 424
           E  +P  D RN GP Q  + + + PE H ++  E+ +  + ++ N  E
Sbjct: 148 EEPKPSGDFRNEGPKQCDDSKIEKPELHVNSKIEEPIHRIDSEHNEPE 195


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 329 PQHQEHETQNPEHHEDAEKIVSSVKNDIN 415
           P +++  T++ E HED +  V  +++D N
Sbjct: 24  PNNKKSRTRSTESHEDRQAKVQKIQSDFN 52


>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 318 IPGPRSIKSTKHRILNTTKMLKKSFLPSKMTLTQRK 425
           +P P S+    HR LN  K+    F P  +  T++K
Sbjct: 224 LPSPVSLSRYMHRSLNWKKLYDIGFAPFPLGSTEKK 259


>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 754

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 25/107 (23%), Positives = 44/107 (41%)
 Frame = +3

Query: 69  KVPEAEDKPLNVVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLK 248
           ++ E E     V++    E+EL      +K  +N ++    E+   P +   +  K    
Sbjct: 646 EIEELEPVVQKVLDEEKQERELKIAERDLKKGENIMKYGD-EIRSRPARTWFQSEKDKQA 704

Query: 249 SDLESLKCRMKMRKSRGL*SI*EIPGPRSIKSTKHRILNTTKMLKKS 389
           S     K +  + K +      E+P  R+ K TK+  L+  K  KKS
Sbjct: 705 SKASEAKDKKSLAKRKKQMEKEEVP--RAYKKTKNDRLSNKKSTKKS 749


>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
 Frame = +2

Query: 386 IVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINELQASLQHFQENFGAQIQKL-N 562
           ++SS  N   + + A   G +++ D +       EQ+  L    +   E FG ++Q++  
Sbjct: 1   MISSFSNGFWSKDYAT--GVKKLFDCLDNGVEENEQVKNLLKLYKEANEEFGEKLQEITK 58

Query: 563 ETLHFIKPADTIAAPSVXETQNKASFETIES 655
           E L   KP +T        T NKA FE + S
Sbjct: 59  ECLKGKKPENT----EDGATSNKA-FEGLRS 84


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -1

Query: 690 PLLKFVFKDLRPDSIVSKEALFCVSSTE 607
           PL   +FKDLRP      E+LF    TE
Sbjct: 205 PLKDLLFKDLRPVQTKELESLFAELPTE 232


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/56 (26%), Positives = 23/56 (41%)
 Frame = +2

Query: 326 PPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQ 493
           PP H ++ TQ    HEDA+    S  + +    I  R  ++      G +    EQ
Sbjct: 609 PPLHLKNTTQTNNAHEDAQSSNLSQNHSLFYERIPQRPSYRIEKQNKGIYEDENEQ 664


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 485 TEQINELQASLQHFQENFGAQIQKLNETL 571
           + ++N+LQ   ++ +  F  QI+KLN  +
Sbjct: 111 SHEVNDLQTDRENLKHQFEDQIEKLNSEI 139


>SPBC244.02c |||U3 snoRNP-associated protein Utp6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +2

Query: 431 LRQGFQEVSDGIGKWYARTEQINELQASLQHFQENFGAQIQKLNETLHFIK 583
           + Q   E+ D + K     ++IN +  + + F+E    +  KLN+ L +I+
Sbjct: 9   MEQSVPELEDLLEKNIFNRDEINNIIKTRRVFEEKLARRQVKLNDFLSYIQ 59


>SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 237

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
 Frame = +2

Query: 464 IGKWYARTEQINELQASLQHFQENFGAQIQKLNETL------HFIKPADTIAAPSVXETQ 625
           + K++     +    A  +HF EN+  +  K  E +      HFI    +     +   +
Sbjct: 29  VSKFHPVETLMEAYNAGQRHFGENYMQEFLKKVELMPDDVQWHFIGSLQSSKCKKIASVK 88

Query: 626 NKASFETIESGLKSLKTN 679
           N  S ETI++  K+   N
Sbjct: 89  NLYSIETIDTEKKARLVN 106


>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 199

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 321 PGPRSIKSTKHRILNTTKMLKKSFLPSKMTLTQRKSLFVKASRKCQTV 464
           P   +  + K  I   +K++  + LP+ +T  Q K LFVK+   C+ V
Sbjct: 39  PAVNTASALKSVISEESKIIVSN-LPTDVTEAQVKELFVKSIGPCKRV 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,492,753
Number of Sequences: 5004
Number of extensions: 47429
Number of successful extensions: 222
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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