Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0648
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 31 0.13
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 27 2.9
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 27 3.8
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe... 27 3.8
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 26 5.0
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |... 26 5.0
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 26 5.0
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe... 26 6.6
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 26 6.6
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo... 25 8.7
SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr 1||... 25 8.7
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 25 8.7
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 31.5 bits (68), Expect = 0.13
Identities = 23/105 (21%), Positives = 55/105 (52%)
Frame = +3
Query: 69 KVPEAEDKPLNVVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLK 248
K P +E P V+ L+ + I +I +++ + ++ +VV+ P + ++ +I+ +
Sbjct: 377 KAPTSEAPPKGHVKQLAKQLGNIYMPQSINNVEPTSHSSISKVVN-PSEKVISKIERACL 435
Query: 249 SDLESLKCRMKMRKSRGL*SI*EIPGPRSIKSTKHRILNTTKMLK 383
+ ++ +KM K+ L P PR++ +T+H+I + ++ K
Sbjct: 436 AGNGNVHPSIKMEKNLEL-----NPHPRTLNATEHKINSRIQVSK 475
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +2
Query: 287 EIKRPLVDLRNPGPPQHQEHETQNPEHHEDA--EKIVSSVKNDINTAE 424
E +P D RN GP Q + + + PE H ++ E+ + + ++ N E
Sbjct: 148 EEPKPSGDFRNEGPKQCDDSKIEKPELHVNSKIEEPIHRIDSEHNEPE 195
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 26.6 bits (56), Expect = 3.8
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +2
Query: 329 PQHQEHETQNPEHHEDAEKIVSSVKNDIN 415
P +++ T++ E HED + V +++D N
Sbjct: 24 PNNKKSRTRSTESHEDRQAKVQKIQSDFN 52
>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 318 IPGPRSIKSTKHRILNTTKMLKKSFLPSKMTLTQRK 425
+P P S+ HR LN K+ F P + T++K
Sbjct: 224 LPSPVSLSRYMHRSLNWKKLYDIGFAPFPLGSTEKK 259
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 26.2 bits (55), Expect = 5.0
Identities = 25/107 (23%), Positives = 44/107 (41%)
Frame = +3
Query: 69 KVPEAEDKPLNVVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLK 248
++ E E V++ E+EL +K +N ++ E+ P + + K
Sbjct: 646 EIEELEPVVQKVLDEEKQERELKIAERDLKKGENIMKYGD-EIRSRPARTWFQSEKDKQA 704
Query: 249 SDLESLKCRMKMRKSRGL*SI*EIPGPRSIKSTKHRILNTTKMLKKS 389
S K + + K + E+P R+ K TK+ L+ K KKS
Sbjct: 705 SKASEAKDKKSLAKRKKQMEKEEVP--RAYKKTKNDRLSNKKSTKKS 749
>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 26.2 bits (55), Expect = 5.0
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Frame = +2
Query: 386 IVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINELQASLQHFQENFGAQIQKL-N 562
++SS N + + A G +++ D + EQ+ L + E FG ++Q++
Sbjct: 1 MISSFSNGFWSKDYAT--GVKKLFDCLDNGVEENEQVKNLLKLYKEANEEFGEKLQEITK 58
Query: 563 ETLHFIKPADTIAAPSVXETQNKASFETIES 655
E L KP +T T NKA FE + S
Sbjct: 59 ECLKGKKPENT----EDGATSNKA-FEGLRS 84
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -1
Query: 690 PLLKFVFKDLRPDSIVSKEALFCVSSTE 607
PL +FKDLRP E+LF TE
Sbjct: 205 PLKDLLFKDLRPVQTKELESLFAELPTE 232
>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 727
Score = 25.8 bits (54), Expect = 6.6
Identities = 15/56 (26%), Positives = 23/56 (41%)
Frame = +2
Query: 326 PPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQ 493
PP H ++ TQ HEDA+ S + + I R ++ G + EQ
Sbjct: 609 PPLHLKNTTQTNNAHEDAQSSNLSQNHSLFYERIPQRPSYRIEKQNKGIYEDENEQ 664
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 25.8 bits (54), Expect = 6.6
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +2
Query: 485 TEQINELQASLQHFQENFGAQIQKLNETL 571
+ ++N+LQ ++ + F QI+KLN +
Sbjct: 111 SHEVNDLQTDRENLKHQFEDQIEKLNSEI 139
>SPBC244.02c |||U3 snoRNP-associated protein Utp6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 488
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +2
Query: 431 LRQGFQEVSDGIGKWYARTEQINELQASLQHFQENFGAQIQKLNETLHFIK 583
+ Q E+ D + K ++IN + + + F+E + KLN+ L +I+
Sbjct: 9 MEQSVPELEDLLEKNIFNRDEINNIIKTRRVFEEKLARRQVKLNDFLSYIQ 59
>SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 237
Score = 25.4 bits (53), Expect = 8.7
Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Frame = +2
Query: 464 IGKWYARTEQINELQASLQHFQENFGAQIQKLNETL------HFIKPADTIAAPSVXETQ 625
+ K++ + A +HF EN+ + K E + HFI + + +
Sbjct: 29 VSKFHPVETLMEAYNAGQRHFGENYMQEFLKKVELMPDDVQWHFIGSLQSSKCKKIASVK 88
Query: 626 NKASFETIESGLKSLKTN 679
N S ETI++ K+ N
Sbjct: 89 NLYSIETIDTEKKARLVN 106
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 321 PGPRSIKSTKHRILNTTKMLKKSFLPSKMTLTQRKSLFVKASRKCQTV 464
P + + K I +K++ + LP+ +T Q K LFVK+ C+ V
Sbjct: 39 PAVNTASALKSVISEESKIIVSN-LPTDVTEAQVKELFVKSIGPCKRV 85
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,492,753
Number of Sequences: 5004
Number of extensions: 47429
Number of successful extensions: 222
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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