Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0648
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0374 + 43144861-43144998,43145695-43145794,43146499-431466... 33 0.32
02_01_0267 - 1766071-1766261,1766368-1766569,1766719-1766814,176... 31 0.74
05_01_0558 - 4880811-4880996,4881098-4881178,4881247-4881393,488... 31 0.98
05_01_0143 - 944169-947273 30 2.3
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 30 2.3
08_01_0356 + 3131214-3132443,3132584-3132778,3132892-3132972,313... 29 3.0
03_06_0204 + 32341756-32341843,32341943-32342025,32342690-323427... 29 3.0
01_06_0749 - 31655348-31657339 29 3.0
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 29 3.9
08_02_0860 + 21970888-21971833,21973400-21974127 29 5.2
04_01_0327 + 4325225-4327486 28 6.9
02_02_0233 + 8105765-8107840 28 6.9
10_08_0520 - 18495118-18498237 28 9.1
06_03_1119 + 27760412-27760527,27760851-27761010,27761283-277614... 28 9.1
>01_07_0374 +
43144861-43144998,43145695-43145794,43146499-43146651,
43147383-43150081
Length = 1029
Score = 32.7 bits (71), Expect = 0.32
Identities = 16/66 (24%), Positives = 33/66 (50%)
Frame = +2
Query: 341 EHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINELQASLQ 520
++ T P ++A + +S ++ +I + GI K++ +QIN++Q +
Sbjct: 252 KNTTSAPIDKDNAREEISRLQKEILVMQTEKEFIKSSYESGIAKYWDLEKQINDMQEQVC 311
Query: 521 HFQENF 538
HFQ+ F
Sbjct: 312 HFQDKF 317
>02_01_0267 -
1766071-1766261,1766368-1766569,1766719-1766814,
1767414-1767560,1767635-1767800,1767907-1767973,
1772850-1772949,1773029-1773099,1773199-1773382,
1773784-1773929,1774484-1774663,1774737-1774824,
1775634-1775838,1775945-1776081,1776529-1776612,
1776718-1776894,1777050-1777194,1777642-1777763,
1777846-1778091,1778571-1778789,1779016-1779094,
1779178-1779257,1779291-1779320
Length = 1053
Score = 31.5 bits (68), Expect = 0.74
Identities = 23/93 (24%), Positives = 47/93 (50%)
Frame = +3
Query: 72 VPEAEDKPLNVVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLKS 251
+ A+ K L++ E S EQEL +++ D+ L+AN + + +K +EE+K +
Sbjct: 673 ISSADSKTLSL-EAESKEQELNSSKSSLDDLTAMLKANVDAINNFTIK--IEELKRQ-RD 728
Query: 252 DLESLKCRMKMRKSRGL*SI*EIPGPRSIKSTK 350
+L++L+ + G + ++ RS+ K
Sbjct: 729 NLKTLEANLDQTVRDGAKDLEQLMSSRSMHLAK 761
>05_01_0558 -
4880811-4880996,4881098-4881178,4881247-4881393,
4881985-4882029,4882370-4883134
Length = 407
Score = 31.1 bits (67), Expect = 0.98
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 296 RPLVDLRNPGPPQHQEHETQNPEHHEDAEK 385
RPL L +P PP Q ET+ E +++E+
Sbjct: 98 RPLPSLASPPPPTQQPQETEEQEQQQESEE 127
>05_01_0143 - 944169-947273
Length = 1034
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/56 (25%), Positives = 30/56 (53%)
Frame = +2
Query: 371 EDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINELQASLQHFQENF 538
E+A++ +S ++ +I + G+ K++ +QIN++Q + +FQE F
Sbjct: 130 ENAQEEISRLQKEILVLQTQKEFLKSSYESGMAKYWDLEKQINDMQEEVCYFQEEF 185
>04_04_1144 + 31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 29.9 bits (64), Expect = 2.3
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +2
Query: 362 EHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTE-QINELQASLQHFQENF 538
+H + E VSS+K + EI + ++VS +W A E ++EL+A Q+ E
Sbjct: 1679 QHVAELEVQVSSLKQQLQETEIHYKHKEEQVSLREVQWEADQEHSVSELKAQRQYAAE-L 1737
Query: 539 GAQIQKLNETLHFIK 583
QI L + L ++
Sbjct: 1738 EKQIGALTQQLQLVE 1752
>08_01_0356 +
3131214-3132443,3132584-3132778,3132892-3132972,
3133324-3133383,3133466-3133560,3133660-3133816,
3133896-3134021,3134398-3134478,3134557-3134647,
3134735-3134868,3135068-3135136,3135219-3135308,
3135405-3135508,3135594-3135762,3136066-3136134
Length = 916
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/68 (26%), Positives = 33/68 (48%)
Frame = +3
Query: 90 KPLNVVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLKSDLESLK 269
+P +V + S ++E N + L+ + P K IV++ SLK D + +K
Sbjct: 285 RPSDVSASASVKREPKADDNDNVPLSQRLKMGESSKSKPPAKNIVKKSPSSLKKDNKKMK 344
Query: 270 CRMKMRKS 293
+MK +K+
Sbjct: 345 MKMKTKKT 352
>03_06_0204 +
32341756-32341843,32341943-32342025,32342690-32342765,
32342876-32342943,32343001-32343045,32343308-32343392,
32344270-32344385,32344497-32344580,32345394-32345540,
32345845-32345956,32346027-32346146,32346338-32346411
Length = 365
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = +2
Query: 335 HQEHETQNPEHH---EDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQIN 499
H+ + Q + H EDAEK+V SVK + E G +V G ++ +N
Sbjct: 152 HEHEDEQKKQEHTFNEDAEKMVKSVKQAMENGEGCRVYGVLDVQRVAGNFHISVHGLN 209
>01_06_0749 - 31655348-31657339
Length = 663
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/81 (22%), Positives = 37/81 (45%)
Frame = -3
Query: 262 LSKSLFNDGLISSTITLTGMSTTSFLFARRLLSMSLIVLAWSMSSCSLDKFSTTFKGLSS 83
L+++LF++ + ++ +T FARR L + W M S+ TF +
Sbjct: 194 LAENLFSEFMFRDVVS---WNTMIIAFARRSLPQRALEFFWMMEGWSVLPNEITFSSVIY 250
Query: 82 ASGTLSGMEAARAASTNVVSN 20
A +++G E ++ V+ +
Sbjct: 251 ACTSINGHEHGKSIHAKVIKH 271
>01_06_0124 -
26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 29.1 bits (62), Expect = 3.9
Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Frame = +2
Query: 281 NEEIKRPLVDLRNPGPPQHQEHETQNPEH--HEDAEKIVSSVKNDINTAEIALRQGFQEV 454
+ E+++ N G QE E + H +ED E + S+++ND+ T + +
Sbjct: 473 SSELQQLEASFENLGNDLEQELERISIMHKNNEDLELVNSNLQNDLATVQGQKNEAVAST 532
Query: 455 SDGIGKWYARTEQINELQASLQHFQENFGAQIQKLNE-TLH 574
+ K + +QI+ LQ ++++ + A+ NE T+H
Sbjct: 533 LELGNKLEEKNQQISNLQEAVENLE---AAKTNMYNEVTVH 570
>08_02_0860 + 21970888-21971833,21973400-21974127
Length = 557
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = -3
Query: 172 LLSMSLIVLAWSMSSCSLDKFSTTFKGLSSAS--GTLSGMEAARAASTNVVSNRAAC 8
LL +S L+WSMS+ S + T G +++S GT R+ +SN+ C
Sbjct: 99 LLDLSSDELSWSMSTTSSSSYQPTNAGAATSSHVGTGDARSDLRSWLGGALSNQDTC 155
>04_01_0327 + 4325225-4327486
Length = 753
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +3
Query: 120 SEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLKSDLESLKCRMKMRKSRG 299
S + +I + N K + + KE+ D KV+ +E +L D+ L+ + +RK RG
Sbjct: 423 SNETMIPE-NVKKLVSELVSRQLKELRDYVKKVVAQEGADALSQDVNLLEMAVYLRKKRG 481
>02_02_0233 + 8105765-8107840
Length = 691
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +2
Query: 362 EHHEDAEKIVSSVKNDINTAEIALRQ--GFQEVSDGIGKWYARTEQ 493
EH KI+ ++ D+ + ++LR + +D G W R EQ
Sbjct: 426 EHRSSTAKIIGFIRKDLTSGWVSLRSVADHRRFNDRRGHWTLRREQ 471
>10_08_0520 - 18495118-18498237
Length = 1039
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 404 NDINTAEIALRQGFQEVSDGIGKWYARTEQINELQASL 517
+D+N + + LR+G + + D + W A E NE A L
Sbjct: 476 SDLNKSRV-LRKGLEHIPDSVRLWKAVVELANEEDARL 512
>06_03_1119 +
27760412-27760527,27760851-27761010,27761283-27761449,
27761525-27761629,27762097-27762864,27762942-27763131,
27763763-27763940,27764106-27764497
Length = 691
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +2
Query: 374 DAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINELQASLQHFQENFG 541
+ E I S++ +++ E+ALRQ G WY R +N+ A + F+ FG
Sbjct: 78 EPEAIKSAIDDELRVVEVALRQN----PKSYGAWYHRKWLLNQKLAPVD-FKCEFG 128
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,042,573
Number of Sequences: 37544
Number of extensions: 297278
Number of successful extensions: 1164
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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