Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0648
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    24   1.3  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    24   1.3  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    24   1.3  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    24   1.8  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   2.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   2.3  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   9.3  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -3

Query: 142 WSMSSCSLDKFSTTFKGLSSASGTLSG 62
           W+M+  + D+++   KGLS    +++G
Sbjct: 141 WTMTMIAFDRYNVIVKGLSGKPLSING 167


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -3

Query: 142 WSMSSCSLDKFSTTFKGLSSASGTLSG 62
           W+M+  + D+++   KGLS    +++G
Sbjct: 107 WTMTMIAFDRYNVIVKGLSGKPLSING 133


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -3

Query: 142 WSMSSCSLDKFSTTFKGLSSASGTLSG 62
           W+M+  + D+++   KGLS    +++G
Sbjct: 17  WTMTMIAFDRYNVIVKGLSGKPLSING 43


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +3

Query: 84  EDKPLNVVENLSSEQELIDQANTIKDIDNSL 176
           E  P+ ++ENL +  E ID+    ++   S+
Sbjct: 333 ETMPMELIENLRNHPEYIDETRNYQECKCSI 363


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +2

Query: 521 HFQENFGAQIQKLNETLHFIKPADTIAAPSVXETQNKAS 637
           H  +  G     LN++LHF++ + +    SV E  ++++
Sbjct: 20  HILDTCGRDTYALNQSLHFVRASLSNLDMSVLECADRSA 58


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +2

Query: 521 HFQENFGAQIQKLNETLHFIKPADTIAAPSVXETQNKAS 637
           H  +  G     LN++LHF++ + +    SV E  ++++
Sbjct: 110 HILDTCGRDTYALNQSLHFVRASLSNLDMSVLECADRSA 148


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 186 KKEVVDIPVKVIVEEIKPSLKSDLESLKCRMKMRK 290
           KKE+ DI  +V VEEI    K  L++   + K +K
Sbjct: 570 KKEIYDILPEVDVEEILGEAKV-LQNFDIKDKNKK 603


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,461
Number of Sequences: 438
Number of extensions: 3497
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)