Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0648
(750 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contai... 32 0.47
At3g61390.2 68416.m06872 U-box domain-containing protein several... 31 0.62
At2g30780.1 68415.m03753 pentatricopeptide (PPR) repeat-containi... 31 0.62
At5g65910.1 68418.m08296 BSD domain-containing protein contains ... 31 0.82
At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5) iden... 31 0.82
At1g51070.1 68414.m05741 basic helix-loop-helix (bHLH) family pr... 30 1.4
At1g12380.1 68414.m01431 expressed protein 30 1.9
At5g42880.1 68418.m05226 hypothetical protein contains Pfam prof... 29 2.5
At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family pr... 29 2.5
At1g03830.1 68414.m00364 guanylate-binding family protein contai... 29 2.5
At1g50750.1 68414.m05707 expressed protein 29 3.3
At5g29624.1 68418.m03640 DC1 domain-containing protein contains ... 29 4.4
At3g05110.1 68416.m00555 hypothetical protein 29 4.4
At2g30410.1 68415.m03704 tubulin folding cofactor A (KIESEL) ide... 29 4.4
At5g35604.1 68418.m04242 hypothetical protein 28 5.8
At3g28600.1 68416.m03570 AAA-type ATPase family protein contains... 28 5.8
At3g04010.1 68416.m00422 glycosyl hydrolase family 17 protein si... 28 5.8
At2g45560.2 68415.m05666 cytochrome P450 family protein 28 5.8
At2g45560.1 68415.m05665 cytochrome P450 family protein 28 5.8
At1g64320.1 68414.m07289 myosin heavy chain-related similar to m... 28 5.8
At4g03430.1 68417.m00470 pre-mRNA splicing factor-related simila... 28 7.6
At1g07900.1 68414.m00859 LOB domain protein 1 / lateral organ bo... 28 7.6
>At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contains
Pfam profile: PF00628: PHD-finger
Length = 704
Score = 31.9 bits (69), Expect = 0.47
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -1
Query: 522 CCKLAWSSLICSVRAYHFPIPSDTSW 445
C WS+ S R YHF IP DT W
Sbjct: 95 CRCTGWSNHFVSKRKYHFIIPIDTEW 120
>At3g61390.2 68416.m06872 U-box domain-containing protein several
hypothetical proteins - Arabidopsis thaliana
Length = 435
Score = 31.5 bits (68), Expect = 0.62
Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = +2
Query: 269 VPDENEEIKRPLVDLRN-PGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGF 445
+ +E EE+K L ++ G + +E T N H E + + + +DI GF
Sbjct: 319 IREEQEELKIKLREVSKLKGKREEEEASTSN--HREPPQYFICPITHDIMEDPHVAADGF 376
Query: 446 QEVSDGIGKWYARTEQINEL 505
+ I +W+ R + + +
Sbjct: 377 TYEGEAISRWFERGHETSPM 396
>At2g30780.1 68415.m03753 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 452
Score = 31.5 bits (68), Expect = 0.62
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +2
Query: 350 TQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYART 487
T P HH D + VS +K+++ T + ++ FQ V D G+W RT
Sbjct: 20 TSLPAHHTDLVQRVSILKDELLTIGNS-KEKFQNVLDQKGQWLFRT 64
>At5g65910.1 68418.m08296 BSD domain-containing protein contains
Pfam profile PF03909: BSD domain
Length = 432
Score = 31.1 bits (67), Expect = 0.82
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = +2
Query: 311 LRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGI 466
L P + Q P+H E+ E +++ +KND R G ++S +
Sbjct: 64 LSQPSSSPDLQERNQTPDHPEEDEDLIAGIKNDFAEIGGRFRTGISKLSGNL 115
>At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5)
identical to HAC5 (GI:21105780) [Arabidopsis thaliana];
similar to CREB-binding protein GB:S39162 from [Homo
sapiens]
Length = 1670
Score = 31.1 bits (67), Expect = 0.82
Identities = 13/46 (28%), Positives = 27/46 (58%)
Frame = +2
Query: 428 ALRQGFQEVSDGIGKWYARTEQINELQASLQHFQENFGAQIQKLNE 565
+L G Q VS G+G+W++ ++ + + + +E+FG + K +E
Sbjct: 524 SLSAGVQPVS-GLGQWHSSSQNLTPISKNSNEEREHFGVRFHKQHE 568
>At1g51070.1 68414.m05741 basic helix-loop-helix (bHLH) family
protein similar to bHLH transcription factor GI:3757520
from [Arabidopsis thaliana]
Length = 226
Score = 30.3 bits (65), Expect = 1.4
Identities = 22/96 (22%), Positives = 48/96 (50%)
Frame = +3
Query: 63 PDKVPEAEDKPLNVVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPS 242
P + P+ DK + + + + D+A +KD+++SL+ KE+ D K + + K
Sbjct: 95 PGRTPKT-DKVAIINDAIRMVNQARDEAQKLKDLNSSLQEKIKELKD--EKNELRDEKQK 151
Query: 243 LKSDLESLKCRMKMRKSRGL*SI*EIPGPRSIKSTK 350
LK + E + ++K K++ +P P+++ +
Sbjct: 152 LKVEKERIDQQLKAIKTQPQPQPCFLPNPQTLSQAQ 187
>At1g12380.1 68414.m01431 expressed protein
Length = 793
Score = 29.9 bits (64), Expect = 1.9
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Frame = +2
Query: 233 QTVVEE*FRKFEVPDENEE-IKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKND 409
+ VVE F+K P I PL +R+ + +PE +D +K+++ + +
Sbjct: 586 EKVVERRFKKSYHPAWAAAFILDPLYLIRDSSGKYLPPFKCLSPEQEKDVDKLITRLVSR 645
Query: 410 INTAEIALRQGFQEVSDGIGKWYARTEQINE 502
+ A IAL + + ++G+ YAR Q+ E
Sbjct: 646 -DEAHIALMELMKWRTEGLDPMYARAVQMKE 675
>At5g42880.1 68418.m05226 hypothetical protein contains Pfam profile
PF05701: Plant protein of unknown function (DUF827)
Length = 751
Score = 29.5 bits (63), Expect = 2.5
Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 3/106 (2%)
Frame = +2
Query: 401 KNDINTAEIALRQGFQEVSDGIGKWYARTEQINELQASLQH--FQENFGAQIQKLNETLH 574
KNDI+ A + R+ +EV I K + +++ + SLQ +E + K E+
Sbjct: 411 KNDIHAAVESARRELEEVKANIEKAASEVKKLKIIAGSLQSELGRERQDLEETKQKESTG 470
Query: 575 FIKPADTIAAPSVXETQNKASFETIES-GLKSLKTNFNSGLNQLSE 709
+ D A + ET K T E+ K+L T L E
Sbjct: 471 LARTNDKDAGEELVETAKKLEQATKEAEDAKALATASRDELRMAKE 516
>At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 284
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +3
Query: 87 DKPLNVVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLKSDLESL 266
DK + + + +EL + N +K +L +E+ K + E K SLKSD+E+L
Sbjct: 40 DKATILTDTVQLLKELTSEVNKLKSEYTALTDESRELTQ--EKNDLREEKTSLKSDIENL 97
Query: 267 KCRMKMR 287
+ + R
Sbjct: 98 NLQYQQR 104
>At1g03830.1 68414.m00364 guanylate-binding family protein contains
Pfam domains PF02263: Guanylate-binding protein,
N-terminal domain and PF02841: Guanylate-binding
protein, C-terminal domain
Length = 991
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/64 (28%), Positives = 33/64 (51%)
Frame = +3
Query: 102 VVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLKSDLESLKCRMK 281
V E +++ +E + QA+T +D LRA V+D K+I E+ + + R +
Sbjct: 536 VTEKIAAMEEKLKQASTTED---GLRAEFSRVLDEKEKIITEKAAKLATLEQQLASTRAE 592
Query: 282 MRKS 293
++KS
Sbjct: 593 LKKS 596
>At1g50750.1 68414.m05707 expressed protein
Length = 816
Score = 29.1 bits (62), Expect = 3.3
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Frame = +2
Query: 278 ENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSV--KNDINTAEIALRQGFQE 451
E E++ + N P HQ+H T+ E + S V D + +IA+ +G Q
Sbjct: 670 EKEDVVADDDTMNNIEPVPHQQHATRGTNRDETSRACKSVVLSPTDESNIQIAVGEGSQG 729
Query: 452 VSDGI---GKWYARTEQINELQASLQHFQENFG 541
G+ G T + NE L+ + +FG
Sbjct: 730 QDCGLQDNGLGSDETSKSNEQLEDLEKRKNDFG 762
>At5g29624.1 68418.m03640 DC1 domain-containing protein contains
Pfam PF03107: DC1 domain
Length = 488
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2
Query: 266 EVPDENEEIKRPLVDLRNPGPPQHQEHE 349
+VPDE EEIK P + G H HE
Sbjct: 264 DVPDEEEEIKDPFKVINENGDIVHISHE 291
>At3g05110.1 68416.m00555 hypothetical protein
Length = 372
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +2
Query: 353 QNPEHHEDAEKIVSSVKNDINTAEIALRQG----FQEVSDGIGKWYARTEQINELQASLQ 520
+N E HE +V S ND + G + D + + Y R +++N+ Q+SLQ
Sbjct: 150 ENDEDHEPVMCVVDSEFNDFRKTMSSFMAGQVWALYDGIDSMPRCYGRIKKVNKCQSSLQ 209
>At2g30410.1 68415.m03704 tubulin folding cofactor A (KIESEL)
identical to cDNA tubulin folding cofactor A,
GI:20514256, SP|O04350 Tubulin-specific chaperone A
(Tubulin-folding cofactor A) (CFA) (TCP1-chaperonin
cofactor A homolog) {Arabidopsis thaliana}
Length = 113
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +2
Query: 269 VPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAE 424
+PD ++ ++ L DL++ + E + PE EDA+K V+ V+ T +
Sbjct: 62 IPDCHKRLESALADLKSTLAELEETDEKEGPE-IEDAKKTVADVEKQFPTED 112
>At5g35604.1 68418.m04242 hypothetical protein
Length = 298
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 37 CSPHAQPPSRTRSPRPKI 90
CSP PPSRT P P +
Sbjct: 92 CSPRLSPPSRTMGPPPPV 109
>At3g28600.1 68416.m03570 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 60 IPDKVPEAEDKPLNVVENLSSEQELIDQANTIKDIDNSLRANKK 191
I + E + P +V ENL + ID ++KD+ +L KK
Sbjct: 405 IESLLKETKIAPADVAENLMKKNTEIDADGSLKDLIQALEGKKK 448
>At3g04010.1 68416.m00422 glycosyl hydrolase family 17 protein
similar to beta-1,3-glucanase GB:S12402 [Nicotiana sp],
GB:CAA03908 [Citrus sinensis], GB:S44364 [Lycopersicon
esculentum]
Length = 491
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -3
Query: 526 EMLQAGLELVNLLGTS-VPFSNTV*HFLEALTKSDFRCVNVIFDGRN 389
+++Q ++VN L + PF+ + FL SDF FDG+N
Sbjct: 189 DIIQEMTQIVNFLAQNKAPFTVNIYPFLSLYLSSDFPFEYAFFDGQN 235
>At2g45560.2 68415.m05666 cytochrome P450 family protein
Length = 322
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -2
Query: 374 LRGVQDSVFRALDAAGARDFLNRLEAS*FPHFHPALQTF*ITLQR 240
+ GVQD+V +DAAG D N F ++TF + +R
Sbjct: 208 INGVQDTVISVMDAAGTPDAANYFPFLRFLDLQGNVKTFKVCTER 252
>At2g45560.1 68415.m05665 cytochrome P450 family protein
Length = 512
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -2
Query: 374 LRGVQDSVFRALDAAGARDFLNRLEAS*FPHFHPALQTF*ITLQR 240
+ GVQD+V +DAAG D N F ++TF + +R
Sbjct: 208 INGVQDTVISVMDAAGTPDAANYFPFLRFLDLQGNVKTFKVCTER 252
>At1g64320.1 68414.m07289 myosin heavy chain-related similar to
myosin heavy chain (GI:4249703) [Rana catesbeiana];
similar to smooth muscle myosin heavy chain SM2
(GI:2352945) [Homo sapiens]
Length = 476
Score = 28.3 bits (60), Expect = 5.8
Identities = 32/127 (25%), Positives = 59/127 (46%)
Frame = +3
Query: 105 VENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLKSDLESLKCRMKM 284
VE + L+DQ N +K SLR+ K E + ++ VEE+ + K L+SLK +
Sbjct: 85 VEEKERVKGLMDQVNGMKHELESLRSQKDE-SEAKLEKKVEEVTET-KMQLKSLKEETEE 142
Query: 285 RKSRGL*SI*EIPGPRSIKSTKHRILNTTKMLKKSFLPSKMTLTQRKSLFVKASRKCQTV 464
++R I ++ G + + L++ M K+ +M +K L + S + + V
Sbjct: 143 ERNRLSEEIDQLKGENQMLHRRISELDSLHMEMKTKSAHEMEDASKK-LDTEVSDQKKLV 201
Query: 465 LENGTLV 485
E ++
Sbjct: 202 KEQDDII 208
>At4g03430.1 68417.m00470 pre-mRNA splicing factor-related similar
to pre-mRNA splicing factor pre-mRNA splicing factor
prp1 (SP:Q12381) [Fission yeast]
Length = 1029
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +2
Query: 392 SSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINELQASL 517
+ +++D+ LR+G + + D + W A E NE A +
Sbjct: 458 AKLEHDVENKSRVLRKGLEHIPDSVRLWKAVVELANEEDARI 499
>At1g07900.1 68414.m00859 LOB domain protein 1 / lateral organ
boundaries domain protein 1 (LBD1) identical to
SP|Q9LQR0 LOB domain protein 1 {Arabidopsis thaliana}
Length = 190
Score = 27.9 bits (59), Expect = 7.6
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +2
Query: 467 GKWYARTEQINELQASLQHFQ-ENFGAQIQKLNETLHFIKPADTIAAPSVXETQNKASFE 643
G Y Q++ELQA L Q E Q Q+ N L I D + Q+ SFE
Sbjct: 110 GAIYHLQRQVSELQAQLAKAQVEMVNMQFQRSN-LLELIYNMDQ----QQKQEQDNMSFE 164
Query: 644 TIESGLKSLKTNFNSGL 694
+ + G K+N NS +
Sbjct: 165 SNDLGFLEDKSNTNSSM 181
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,014,623
Number of Sequences: 28952
Number of extensions: 247623
Number of successful extensions: 1106
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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