Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0647
(430 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42689| Best HMM Match : Spectrin (HMM E-Value=0) 108 2e-24
SB_32817| Best HMM Match : Spectrin (HMM E-Value=3.7e-21) 50 8e-07
SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 4e-05
SB_4655| Best HMM Match : Spectrin (HMM E-Value=0) 33 1e-04
SB_53744| Best HMM Match : Spectrin (HMM E-Value=1.8e-28) 37 0.006
SB_31866| Best HMM Match : Spectrin (HMM E-Value=1.2) 36 0.014
SB_45897| Best HMM Match : Peptidase_C50 (HMM E-Value=2.7e-08) 32 0.18
SB_7706| Best HMM Match : Spectrin (HMM E-Value=0) 31 0.54
SB_29386| Best HMM Match : Spectrin (HMM E-Value=1.9e-29) 30 0.71
SB_59804| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_52896| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0023) 29 2.2
SB_51001| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_38681| Best HMM Match : RVT_1 (HMM E-Value=0.0082) 29 2.2
SB_31795| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_21551| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0016) 29 2.2
SB_4717| Best HMM Match : Exo_endo_phos (HMM E-Value=0.49) 29 2.2
SB_33858| Best HMM Match : RVT_1 (HMM E-Value=3.7e-21) 29 2.2
SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_10275| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_46420| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0) 27 8.7
SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_49105| Best HMM Match : NDK (HMM E-Value=5.5) 27 8.7
>SB_42689| Best HMM Match : Spectrin (HMM E-Value=0)
Length = 1317
Score = 108 bits (259), Expect = 2e-24
Identities = 59/139 (42%), Positives = 77/139 (55%)
Frame = -1
Query: 430 VXERARGVSDEXXRDAISVSAXQRKHHNFMQDLTTLQQQVESIKSECSRLGASYAGEKAA 251
+ E+ +++E RD SV QR H +F DL L QV I+ E RL SYAGEKA+
Sbjct: 886 IQEKDNLMTEELGRDLNSVQQLQRTHQSFEADLAPLGHQVSGIQEEAGRLLGSYAGEKAS 945
Query: 250 EITRREREVXXXXXXXXXXXXXXXAKLEDADRLYRFLSQVRTLTXWMDDVVRQMNTGEKP 71
EI +E EV KL DAD LYRFL V+ WM+D+++ + T EK
Sbjct: 946 EIQAKEDEVVQAWKNLNLRVRQRTDKLHDADDLYRFLIAVQDQMLWMNDMLKHILTYEKA 1005
Query: 70 RDVSGVELXMNNHQSXKAE 14
+DVSGVE+ M+ HQS E
Sbjct: 1006 KDVSGVEVLMDQHQSRHVE 1024
>SB_32817| Best HMM Match : Spectrin (HMM E-Value=3.7e-21)
Length = 217
Score = 50.0 bits (114), Expect = 8e-07
Identities = 34/129 (26%), Positives = 57/129 (44%)
Frame = -1
Query: 406 SDEXXRDAISVSAXQRKHHNFMQDLTTLQQQVESIKSECSRLGASYAGEKAAEITRRERE 227
S E RD +V A RKH + ++LT ++ ++E ++ E RL S A + ++ +
Sbjct: 90 SGEVGRDLPAVEALIRKHDDVERELTVIEGKMEELEGEAYRLVRSQP-HMARAVQAKQAD 148
Query: 226 VXXXXXXXXXXXXXXXAKLEDADRLYRFLSQVRTLTXWMDDVVRQMNTGEKPRDVSGVEL 47
+ LE L FL R L WM+D+ +M++GE +V E
Sbjct: 149 IIEQWERLNDLFDQRKVILEANRLLQIFLVDYRDLMSWMNDLGTRMSSGELADNVRDAEA 208
Query: 46 XMNNHQSXK 20
+ H+ K
Sbjct: 209 MLGLHEERK 217
Score = 33.9 bits (74), Expect = 0.058
Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 1/112 (0%)
Frame = -1
Query: 346 FMQDLTTLQQQVESIKSECSRL-GASYAGEKAAEITRREREVXXXXXXXXXXXXXXXAKL 170
F QDL +VE+I +L G +AG + I +R+ + KL
Sbjct: 4 FDQDLAVDAARVEAINVLAEKLIGQGHAG--SVRIQQRQNALTERWNRLQDKASERRQKL 61
Query: 169 EDADRLYRFLSQVRTLTXWMDDVVRQMNTGEKPRDVSGVELXMNNHQSXKAE 14
+A ++ F R ++ +++ +GE RD+ VE + H + E
Sbjct: 62 AEACEIHAFNRNCRDVSSMINEKAAVQTSGEVGRDLPAVEALIRKHDDVERE 113
>SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3213
Score = 44.4 bits (100), Expect = 4e-05
Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 1/137 (0%)
Frame = -1
Query: 409 VSDEXXRDAISVSAXQRKHHNFMQDLTTLQQQVESIKSECSRL-GASYAGEKAAEITRRE 233
+S + RD QRK F QDL +VE+I +L G +AG + I +R+
Sbjct: 1443 LSSDYGRDFEHCVRLQRKMKEFDQDLAVDAARVEAINVLAEKLIGQGHAG--SVRIQQRQ 1500
Query: 232 REVXXXXXXXXXXXXXXXAKLEDADRLYRFLSQVRTLTXWMDDVVRQMNTGEKPRDVSGV 53
+ KL +A ++ F R ++ +++ +GE RD+ V
Sbjct: 1501 NALTERWNRLQDKASERRQKLAEACEIHAFNRNCRDVSSMINEKAAVQTSGEVGRDLPAV 1560
Query: 52 ELXMNNHQSXKAEKLXL 2
E + H + EK+ L
Sbjct: 1561 EALIRKHDDVEREKVIL 1577
Score = 39.9 bits (89), Expect = 9e-04
Identities = 28/127 (22%), Positives = 57/127 (44%), Gaps = 1/127 (0%)
Frame = -1
Query: 406 SDEXXRDAISVSAXQRKHHNFMQDLTTLQQQVESIKSECSRLGASYAGE-KAAEITRRER 230
S + RD S RKH +L + ++ ++S S L S AG+ + +++ + +
Sbjct: 2212 STDYGRDETSAETLLRKHDALQLELDANESKIRDLRSIYSEL--SDAGDTEFSKLEKIQD 2269
Query: 229 EVXXXXXXXXXXXXXXXAKLEDADRLYRFLSQVRTLTXWMDDVVRQMNTGEKPRDVSGVE 50
E+ +L D+ RL+ FL + L W+++ +++ + RD+ VE
Sbjct: 2270 ELEERYTHLRDVARDRHRRLLDSSRLFNFLREADELGAWVEEKEAIVSSDDCGRDLEHVE 2329
Query: 49 LXMNNHQ 29
+ M +
Sbjct: 2330 MLMQKFE 2336
Score = 34.7 bits (76), Expect = 0.033
Identities = 26/132 (19%), Positives = 53/132 (40%), Gaps = 1/132 (0%)
Frame = -1
Query: 406 SDEXXRDAISVSAXQRKHHNFMQDLTTLQQQVESIKSECSRL-GASYAGEKAAEITRRER 230
S + ISV Q++H F +LT Q +++++ S L + Y+ E R
Sbjct: 870 SGDLGTSLISVQRLQKRHLAFENELTNHQTRIDTVLSSGQDLIDSCYSATDKVE--ERCE 927
Query: 229 EVXXXXXXXXXXXXXXXAKLEDADRLYRFLSQVRTLTXWMDDVVRQMNTGEKPRDVSGVE 50
E+ +L D+ ++LS+ WM+D + + +D + E
Sbjct: 928 ELQNLWDELVDMAAQRKQRLHDSFLSQKYLSEANEADSWMNDKAGLAASQDYGKDGASAE 987
Query: 49 LXMNNHQSXKAE 14
+ H++ + +
Sbjct: 988 TLLTRHKALQVD 999
Score = 33.5 bits (73), Expect = 0.076
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = -1
Query: 166 DADRLYR-FLSQVRTLTXWMDDVVRQMNTGEKPRDVSGVELXMNNHQSXKAE 14
+A+RL + FL R L WM+D+ +M++GE +V E + H+ K +
Sbjct: 1578 EANRLLQIFLVDYRDLMSWMNDLGTRMSSGELADNVRDAEAMLELHEERKGQ 1629
Score = 32.7 bits (71), Expect = 0.13
Identities = 12/50 (24%), Positives = 30/50 (60%)
Frame = -1
Query: 430 VXERARGVSDEXXRDAISVSAXQRKHHNFMQDLTTLQQQVESIKSECSRL 281
+ E+ + +DE +D I++ + +KH F +LT ++ ++S++ + +L
Sbjct: 1330 IMEKLQTATDESFKDPINLESKLQKHQAFESELTAHERAIDSVRDKGEQL 1379
Score = 29.1 bits (62), Expect = 1.6
Identities = 23/138 (16%), Positives = 63/138 (45%), Gaps = 1/138 (0%)
Frame = -1
Query: 424 ERARGVSDEXXRDAISVSAXQRKHHNFMQDLTTLQQQVESI-KSECSRLGASYAGEKAAE 248
E+ + ++ R+A ++ +KH F +++ + ++++I ++ S + S + ++ E
Sbjct: 1811 EKLQIAAEASYREATNLQQKLQKHQTFEAEVSAHKSELDAITQTGQSLMRNSPSCQETVE 1870
Query: 247 ITRREREVXXXXXXXXXXXXXXXAKLEDADRLYRFLSQVRTLTXWMDDVVRQMNTGEKPR 68
R +++ +L++A + F V L W+++V + + + +
Sbjct: 1871 --SRLKDLADLWSLLGDLSDNKAQRLKEAIQKQTFERNVIELQAWIEEVENALASEDYGK 1928
Query: 67 DVSGVELXMNNHQSXKAE 14
D+ V + HQS + +
Sbjct: 1929 DMRSVNNLIKRHQSLQMD 1946
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/54 (22%), Positives = 27/54 (50%)
Frame = -1
Query: 175 KLEDADRLYRFLSQVRTLTXWMDDVVRQMNTGEKPRDVSGVELXMNNHQSXKAE 14
KL+ A+R + + + WM++ + + RD++GV+ HQ +++
Sbjct: 734 KLQQAERQRQLNRAMEDVRIWMNETEAVLGLEDTGRDLAGVKFLTKKHQLLESD 787
>SB_4655| Best HMM Match : Spectrin (HMM E-Value=0)
Length = 934
Score = 32.7 bits (71), Expect(2) = 1e-04
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = -1
Query: 175 KLEDADRLYRFLSQVRTLTXWMDDVVRQMNTGEKPRDVSGVELXMNNHQSXK 20
+LED+ RL RF+ R +++++ + E +DV+G E + HQ K
Sbjct: 321 RLEDSYRLQRFIGDFRDHMSFINEMKVLIMADELAKDVAGGEALLERHQEHK 372
Score = 32.3 bits (70), Expect = 0.18
Identities = 19/83 (22%), Positives = 36/83 (43%)
Frame = -1
Query: 262 EKAAEITRREREVXXXXXXXXXXXXXXXAKLEDADRLYRFLSQVRTLTXWMDDVVRQMNT 83
E +I R +V +LEDA R ++F + W+++ + Q+ +
Sbjct: 14 ETVEDIQNRREQVLRHYADFKESTKLRRRRLEDAKRYFQFKRDADEVEDWINEKL-QIAS 72
Query: 82 GEKPRDVSGVELXMNNHQSXKAE 14
E RD ++ + HQ+ +AE
Sbjct: 73 DESYRDPMNLQDKLQKHQAFEAE 95
Score = 29.1 bits (62), Expect(2) = 1e-04
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = -1
Query: 406 SDEXXRDAISVSAXQRKHHNFMQDLTTLQQQVESIKSECSRLGASY 269
SD+ +D SV+A RKH +DL L+ + + K +RL SY
Sbjct: 284 SDDYGKDLASVNALSRKHEALERDLAALEDKSDVRK---ARLEDSY 326
>SB_53744| Best HMM Match : Spectrin (HMM E-Value=1.8e-28)
Length = 140
Score = 37.1 bits (82), Expect = 0.006
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = -1
Query: 175 KLEDADRLYRFLSQVRTLTXWMDDVVRQMNTGEKPRDVSGVELXMNNHQSXKAE 14
KL D+ RFL++ R L W+ + +++ E +DV+ E ++ HQ +AE
Sbjct: 26 KLLDSYDYQRFLNEFRDLISWIHGIKALVSSDELAKDVASAEALIDRHQEYRAE 79
>SB_31866| Best HMM Match : Spectrin (HMM E-Value=1.2)
Length = 86
Score = 35.9 bits (79), Expect = 0.014
Identities = 15/53 (28%), Positives = 30/53 (56%)
Frame = -1
Query: 391 RDAISVSAXQRKHHNFMQDLTTLQQQVESIKSECSRLGASYAGEKAAEITRRE 233
+D +V QR+ +N +DL L+ + S++++ +L + Y GE EI + +
Sbjct: 20 KDLATVMVLQRRLNNIQRDLPALEDKCTSLENDAQQLCSEYEGEPEEEIVKEK 72
>SB_45897| Best HMM Match : Peptidase_C50 (HMM E-Value=2.7e-08)
Length = 1907
Score = 32.3 bits (70), Expect = 0.18
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +3
Query: 249 SAAFSPAYDAPSREHSLFMDSTCCCSVVRSCMKLWC 356
S FS Y A ++ LFM++TC SV C+K WC
Sbjct: 535 SECFSIGYCAYKQD--LFMEATCLMSVGCQCLKEWC 568
>SB_7706| Best HMM Match : Spectrin (HMM E-Value=0)
Length = 686
Score = 30.7 bits (66), Expect = 0.54
Identities = 26/130 (20%), Positives = 48/130 (36%)
Frame = -1
Query: 406 SDEXXRDAISVSAXQRKHHNFMQDLTTLQQQVESIKSECSRLGASYAGEKAAEITRRERE 227
SD+ +V +KH F DL +++V I++ ++L + + I R
Sbjct: 404 SDDYGDTLAAVQGLLKKHEAFETDLEVHRERVNDIENAGNQL-INDGNHQGELIEHRISS 462
Query: 226 VXXXXXXXXXXXXXXXAKLEDADRLYRFLSQVRTLTXWMDDVVRQMNTGEKPRDVSGVEL 47
+ KL D +F + + W+ D + E RD+S V+
Sbjct: 463 IKTKLVELDRMASYRKTKLNDNSAFLQFNWKADVVESWIGDKEGIARSEELGRDLSSVQT 522
Query: 46 XMNNHQSXKA 17
M ++ A
Sbjct: 523 LMTKQETFDA 532
Score = 29.1 bits (62), Expect = 1.6
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = -1
Query: 175 KLEDADRLYRFLSQVRTLTXWMDDVVRQMNTGEKPRDVSGVELXMNNHQSXKAE 14
KL +++ L+ F V W+ + ++ + +D+SGVE HQ +AE
Sbjct: 268 KLAESNALHTFYRDVDDEESWIKEKKLLTSSEDYGKDLSGVENLRKKHQRLEAE 321
>SB_29386| Best HMM Match : Spectrin (HMM E-Value=1.9e-29)
Length = 181
Score = 30.3 bits (65), Expect = 0.71
Identities = 21/125 (16%), Positives = 48/125 (38%)
Frame = -1
Query: 406 SDEXXRDAISVSAXQRKHHNFMQDLTTLQQQVESIKSECSRLGASYAGEKAAEITRRERE 227
S+E +D V A Q+K +F +D++ + +++ + RL + E I +
Sbjct: 45 SEEVGKDFEHVEAMQKKFDDFQKDMSANEVRIKELTILAERLKEEHYTEYEM-IQEMIEK 103
Query: 226 VXXXXXXXXXXXXXXXAKLEDADRLYRFLSQVRTLTXWMDDVVRQMNTGEKPRDVSGVEL 47
+ L+ A + +F W+ + +++ + RD++ V+
Sbjct: 104 LTQKWTDLNQMAEQRKDNLDSAQEIQKFHRDADDTKAWISEKDTALSSSDYGRDLASVQA 163
Query: 46 XMNNH 32
H
Sbjct: 164 LQRKH 168
>SB_59804| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 676
Score = 29.1 bits (62), Expect = 1.6
Identities = 25/131 (19%), Positives = 52/131 (39%)
Frame = -1
Query: 406 SDEXXRDAISVSAXQRKHHNFMQDLTTLQQQVESIKSECSRLGASYAGEKAAEITRRERE 227
S++ R + V KH + + ++ +I ++ A+ E I +R+R
Sbjct: 424 SEDYGRHLLDVQNMLDKHSLVESQIQSQHERTLAINTQAQSFVAAKHPETEV-IKQRQRL 482
Query: 226 VXXXXXXXXXXXXXXXAKLEDADRLYRFLSQVRTLTXWMDDVVRQMNTGEKPRDVSGVEL 47
+ A+LED+ LY F V ++ + + + E RD++ +
Sbjct: 483 LTQAFQALVQLGKERRARLEDSLELYTFFEDVEEEDIFIKETDKLAASKEVGRDLASLTR 542
Query: 46 XMNNHQSXKAE 14
H++ +AE
Sbjct: 543 LQQRHEALEAE 553
>SB_52896| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0023)
Length = 393
Score = 28.7 bits (61), Expect = 2.2
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -1
Query: 376 VSAXQRKHHNFMQDLTTLQQQVESIKSECSRLGASYAGEKAAEI 245
VS Q+ H F D + S++ EC + ASY K A++
Sbjct: 346 VSKRQKALHQFGNDSPQFKMYRNSVQEECKKSKASYYKTKVAKL 389
>SB_51001| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 843
Score = 28.7 bits (61), Expect = 2.2
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -1
Query: 376 VSAXQRKHHNFMQDLTTLQQQVESIKSECSRLGASYAGEKAAEI 245
VS Q+ H F D + S++ EC + ASY K A++
Sbjct: 488 VSKRQKALHQFGNDSPQFKMYRNSVQEECKKSKASYYKTKVAKL 531
>SB_38681| Best HMM Match : RVT_1 (HMM E-Value=0.0082)
Length = 559
Score = 28.7 bits (61), Expect = 2.2
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -1
Query: 376 VSAXQRKHHNFMQDLTTLQQQVESIKSECSRLGASYAGEKAAEI 245
VS Q+ H F D + S++ EC + ASY K A++
Sbjct: 30 VSKRQKALHQFGNDSPQFKMYRNSVQEECKKSKASYYKTKVAKL 73
>SB_31795| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1525
Score = 28.7 bits (61), Expect = 2.2
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -1
Query: 376 VSAXQRKHHNFMQDLTTLQQQVESIKSECSRLGASYAGEKAAEI 245
VS Q+ H F D + S++ EC + ASY K A++
Sbjct: 381 VSKRQKALHQFGNDSPQFKMYRNSVQEECKKSKASYYKTKVAKL 424
>SB_21551| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0016)
Length = 999
Score = 28.7 bits (61), Expect = 2.2
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -1
Query: 376 VSAXQRKHHNFMQDLTTLQQQVESIKSECSRLGASYAGEKAAEI 245
VS Q+ H F D + S++ EC + ASY K A++
Sbjct: 625 VSKRQKALHQFGNDSPQFKMYRNSVQEECKKSKASYYKTKVAKL 668
>SB_4717| Best HMM Match : Exo_endo_phos (HMM E-Value=0.49)
Length = 439
Score = 28.7 bits (61), Expect = 2.2
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -1
Query: 376 VSAXQRKHHNFMQDLTTLQQQVESIKSECSRLGASYAGEKAAEI 245
VS Q+ H F D + S++ EC + ASY K A++
Sbjct: 389 VSKRQKALHQFGNDSPQFKMYRNSVQEECKKSKASYYKTKVAKL 432
>SB_33858| Best HMM Match : RVT_1 (HMM E-Value=3.7e-21)
Length = 692
Score = 28.7 bits (61), Expect = 2.2
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -1
Query: 376 VSAXQRKHHNFMQDLTTLQQQVESIKSECSRLGASYAGEKAAEI 245
VS Q+ H F D + S++ EC + ASY K A++
Sbjct: 102 VSKRQKALHQFGNDSPQFKMYRNSVQEECKKSKASYYKTKVAKL 145
>SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1378
Score = 27.9 bits (59), Expect = 3.8
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -1
Query: 358 KHHNFMQDLTTLQQQVESIKSECSRLGASYAGEKAAEI 245
KH N ++DL TL+ I C + S GE A E+
Sbjct: 543 KHSNILEDLETLRLFSRVIPEYCRAMEESEIGEHAFEL 580
>SB_10275| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 947
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -1
Query: 376 VSAXQRKHHNFMQDLTTLQQQVESIKSECSRLGASYAGEKAA 251
VS Q+ H F D + S++ EC + ASY K A
Sbjct: 138 VSKRQKALHQFGNDSPQFKMYRNSVQEECKKSKASYYKTKVA 179
>SB_46420| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 238
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/17 (52%), Positives = 14/17 (82%), Gaps = 1/17 (5%)
Frame = +3
Query: 306 DSTCC-CSVVRSCMKLW 353
DS CC C+V++SC++ W
Sbjct: 201 DSECCDCNVLKSCVRPW 217
>SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0)
Length = 2007
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 109 DDVVRQMNTGEKPRDVSGVELXMNNHQSXKAEK 11
DDVV + GEKP ++ V M N S + +K
Sbjct: 24 DDVVHIIPAGEKPMVMTNVSRLMANSSSTRNQK 56
>SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2353
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3
Query: 261 SPAYDAPSREHSLFMDSTCCCS 326
SP+Y A R+H L CCS
Sbjct: 2155 SPSYSASVRDHMLLFHDGLCCS 2176
>SB_49105| Best HMM Match : NDK (HMM E-Value=5.5)
Length = 92
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3
Query: 261 SPAYDAPSREHSLFMDSTCCCS 326
SP+Y A R+H L CCS
Sbjct: 62 SPSYSASVRDHMLLFHDGLCCS 83
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,887,278
Number of Sequences: 59808
Number of extensions: 60572
Number of successful extensions: 275
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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