Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0647
         (430 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52850.1 68418.m06560 pentatricopeptide (PPR) repeat-containi...    27   4.1  
At3g51320.1 68416.m05617 pentatricopeptide (PPR) repeat-containi...    27   4.1  
At5g57210.1 68418.m07147 microtubule-associated protein-related ...    27   5.4  
At2g31030.1 68415.m03783 oxysterol-binding family protein simila...    26   9.4  

>At5g52850.1 68418.m06560 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 893

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
 Frame = -1

Query: 364 QRKHHNFM-QDLTTLQQ------QVESIKSECSRLGASYAGEKAAEITRREREV 224
           Q K H+F+ +D+T + +      ++ESIK E  R G+ Y G + A     ++ V
Sbjct: 774 QGKVHSFVSEDVTRVDKTNGIYAEIESIKEEIKRFGSPYRGNENASFHSAKQAV 827


>At3g51320.1 68416.m05617 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 486

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 264 PAYDAPSREHSLFMDSTCCCSVVRSCMKLWC 356
           P   +P R  S F DS+   S+ RS  KL+C
Sbjct: 32  PDSSSPERSSSRFGDSSYTVSIYRSIGKLYC 62


>At5g57210.1 68418.m07147 microtubule-associated protein-related
           contains some similarity to microtubule-associated
           protein GI:5032258 from [Arabidopsis thaliana]; contains
           Pfam profile PF00566: TBC domain
          Length = 737

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 288 EHSLFMDSTCCCSVVRSCMKLWCLR 362
           EH  +  S+ C  ++R  + LWCL+
Sbjct: 127 EHGSYFQSSGCQGMLRRILLLWCLK 151


>At2g31030.1 68415.m03783 oxysterol-binding family protein similar
           to SWH1 [Saccharomyces cerevisiae] GI:402658; contains
           Pfam profile PF01237: Oxysterol-binding protein
          Length = 489

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 343 MQDLTTLQQQVESIKSECSRLGASYAGEKAAEITR 239
           + D T  ++ V+ IK  C +LG  Y G  + E T+
Sbjct: 41  VSDDTCPEKDVKEIKKFCEKLGYVYEGRLSEEYTQ 75


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,340,099
Number of Sequences: 28952
Number of extensions: 38003
Number of successful extensions: 167
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)