Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0645
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.10c |||metallochaperone |Schizosaccharomyces pombe|chr ...    55   9e-09
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    26   6.6  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    25   8.7  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    25   8.7  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    25   8.7  

>SPBC1709.10c |||metallochaperone |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 68

 Score = 55.2 bits (127), Expect = 9e-09
 Identities = 29/59 (49%), Positives = 40/59 (67%)
 Frame = +2

Query: 167 FNVEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEIIKKTGKK 343
           FNV M C+GC  A++RVL RL   GVED SIS+ +Q+V V +    + + + IKKTGK+
Sbjct: 5   FNVAMACDGCKNAIDRVLTRL---GVEDKSISVEKQEVIVTTDKPYELVEQTIKKTGKE 60


>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -2

Query: 731 PTIVPSLYHFPNAATSIP 678
           P+I PSLY FPN    IP
Sbjct: 409 PSIDPSLYVFPNGDYQIP 426


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 23/70 (32%), Positives = 32/70 (45%)
 Frame = -1

Query: 366 Y*APTYVVFLPVFLIISSKSSALSVDLTDTFCSGKLIDISSTPCPFSLLRTRSTAPEQPS 187
           Y  P Y   +PV +  SS SS+ +   T T  S  L  +SST    S     S+    PS
Sbjct: 95  YNGPYYSQCIPVDIDPSSSSSSAASSTTSTTSSSSL--VSSTTLTSSSPSAVSSTTSIPS 152

Query: 186 QVISTLNMCV 157
            + ST++  V
Sbjct: 153 -ISSTISSSV 161


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -3

Query: 637 KYTKCMGLI*AIAYDKCW*NQVNKLFIWWDSPSSYSKHE 521
           K+ K   ++   AY+ CW  Q + L   W   S Y K E
Sbjct: 94  KWDKAFQVLSGPAYEVCWSQQGHILATSWKQISIYVKDE 132


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +2

Query: 212 RVLNRLKGQGVEDISISLPEQKVS 283
           +VL  LK  G+ D+SIS P+Q++S
Sbjct: 216 QVLEELK-TGISDLSISRPKQRLS 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,160,196
Number of Sequences: 5004
Number of extensions: 67180
Number of successful extensions: 165
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)