BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0645 (750 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC1709.10c |||metallochaperone |Schizosaccharomyces pombe|chr ... 55 9e-09 SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 26 6.6 SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 25 8.7 SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 25 8.7 SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 25 8.7 >SPBC1709.10c |||metallochaperone |Schizosaccharomyces pombe|chr 2|||Manual Length = 68 Score = 55.2 bits (127), Expect = 9e-09 Identities = 29/59 (49%), Positives = 40/59 (67%) Frame = +2 Query: 167 FNVEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEIIKKTGKK 343 FNV M C+GC A++RVL RL GVED SIS+ +Q+V V + + + + IKKTGK+ Sbjct: 5 FNVAMACDGCKNAIDRVLTRL---GVEDKSISVEKQEVIVTTDKPYELVEQTIKKTGKE 60 >SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccharomyces pombe|chr 2|||Manual Length = 485 Score = 25.8 bits (54), Expect = 6.6 Identities = 11/18 (61%), Positives = 12/18 (66%) Frame = -2 Query: 731 PTIVPSLYHFPNAATSIP 678 P+I PSLY FPN IP Sbjct: 409 PSIDPSLYVFPNGDYQIP 426 >SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 197 Score = 25.4 bits (53), Expect = 8.7 Identities = 23/70 (32%), Positives = 32/70 (45%) Frame = -1 Query: 366 Y*APTYVVFLPVFLIISSKSSALSVDLTDTFCSGKLIDISSTPCPFSLLRTRSTAPEQPS 187 Y P Y +PV + SS SS+ + T T S L +SST S S+ PS Sbjct: 95 YNGPYYSQCIPVDIDPSSSSSSAASSTTSTTSSSSL--VSSTTLTSSSPSAVSSTTSIPS 152 Query: 186 QVISTLNMCV 157 + ST++ V Sbjct: 153 -ISSTISSSV 161 >SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr 2|||Manual Length = 807 Score = 25.4 bits (53), Expect = 8.7 Identities = 13/39 (33%), Positives = 18/39 (46%) Frame = -3 Query: 637 KYTKCMGLI*AIAYDKCW*NQVNKLFIWWDSPSSYSKHE 521 K+ K ++ AY+ CW Q + L W S Y K E Sbjct: 94 KWDKAFQVLSGPAYEVCWSQQGHILATSWKQISIYVKDE 132 >SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual Length = 539 Score = 25.4 bits (53), Expect = 8.7 Identities = 12/24 (50%), Positives = 18/24 (75%) Frame = +2 Query: 212 RVLNRLKGQGVEDISISLPEQKVS 283 +VL LK G+ D+SIS P+Q++S Sbjct: 216 QVLEELK-TGISDLSISRPKQRLS 238 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,160,196 Number of Sequences: 5004 Number of extensions: 67180 Number of successful extensions: 165 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 158 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 164 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 357280532 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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