Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0645
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44018| Best HMM Match : HMA (HMM E-Value=2.7e-06) 66 2e-11
SB_4088| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_29518| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_948| Best HMM Match : Sec62 (HMM E-Value=9.5) 29 4.0
SB_48975| Best HMM Match : zf-CHY (HMM E-Value=8.5) 29 4.0
SB_31615| Best HMM Match : GCC2_GCC3 (HMM E-Value=0.053) 29 4.0
SB_13816| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 28 7.0
SB_44628| Best HMM Match : efhand (HMM E-Value=2.8e-11) 28 7.0
SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
>SB_44018| Best HMM Match : HMA (HMM E-Value=2.7e-06)
Length = 60
Score = 66.5 bits (155), Expect = 2e-11
Identities = 33/60 (55%), Positives = 44/60 (73%)
Frame = +2
Query: 179 MTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEIIKKTGKKTTYVG 358
MTC+GCSGAVERVL ++ V +I I L ++V V STLS+D+LL IKK GK+ +Y+G
Sbjct: 1 MTCKGCSGAVERVLKKVPD--VANIEIDLEMKRVFVTSTLSSDELLATIKKAGKEASYIG 58
>SB_4088| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 895
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -1
Query: 288 LTDTFCSGKLIDISSTPCPFSLLRTRSTAPEQPSQVISTLNMCVVVIL 145
L D +GKL DI + P ++LR + E+ SQ + VVVI+
Sbjct: 716 LADELKNGKLGDIDADPNSLTILRPQEKEQEESSQTEIVVIAVVVVIV 763
>SB_29518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -1
Query: 288 LTDTFCSGKLIDISSTPCPFSLLRTRSTAPEQPSQVISTLNMCVVVIL 145
L D GKL DI++ P +LR + E+ SQ + VVVI+
Sbjct: 309 LADELKDGKLGDINADPNSLKILRPQEKEQEESSQTEIVVIAVVVVIV 356
>SB_948| Best HMM Match : Sec62 (HMM E-Value=9.5)
Length = 306
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -1
Query: 288 LTDTFCSGKLIDISSTPCPFSLLRTRSTAPEQPSQVISTLNMCVVVIL 145
L D GKL DI++ P +LR + E+ SQ + VVVI+
Sbjct: 126 LADELKDGKLGDINADPNSLKILRPQEKEQEESSQTEIVVIAVVVVIV 173
>SB_48975| Best HMM Match : zf-CHY (HMM E-Value=8.5)
Length = 278
Score = 29.1 bits (62), Expect = 4.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 456 AIIYKLTLYLIKMYNFISYSGYSC 527
AI+YK+T+ +++ Y+ S GY C
Sbjct: 3 AILYKVTIAIVQFYDCHSVQGYDC 26
>SB_31615| Best HMM Match : GCC2_GCC3 (HMM E-Value=0.053)
Length = 870
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = -3
Query: 286 NRYLLFW*TN----RYILYTLPLQSVENSFDGARTTFTGHFYVEYVCR 155
N Y W +N +YI +T LQ N++ +TF G F ++CR
Sbjct: 138 NGYFWSWRSNAEKEQYINFTSQLQIFNNTYSRNLSTFNGSFPQPHLCR 185
>SB_13816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 255
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -1
Query: 288 LTDTFCSGKLIDISSTPCPFSLLRTRSTAPEQPSQVISTLNMCVVVIL 145
L D GKL DI++ P +LR + E+ SQ + VVVI+
Sbjct: 76 LADELKDGKLGDINADPNSLKILRPQEKEQEESSQTEIVVIAVVVVIV 123
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +2
Query: 164 IFNVEMTC-EGCSGAVERVLNRLKGQGVEDISIS 262
+++VE+ C E G + VLNR +GQ +E+ +++
Sbjct: 719 VYSVEIQCPESAVGGIYGVLNRRRGQVLEESNVA 752
>SB_44628| Best HMM Match : efhand (HMM E-Value=2.8e-11)
Length = 205
Score = 28.3 bits (60), Expect = 7.0
Identities = 23/80 (28%), Positives = 35/80 (43%)
Frame = +2
Query: 104 SYSLFHIVYVYSYSKMTTTHIFNVEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVS 283
++ L H+V S + H+ GC+G V KGQ D+ S + +
Sbjct: 4 NFILVHLVVTVPSSGLHPKHLCTPSPKGVGCTG-VPGEGGYSKGQ-CHDVPPSYLKMGLK 61
Query: 284 VKSTLSADDLLEIIKKTGKK 343
S L +DL EI ++TG K
Sbjct: 62 SSSLLQEEDLAEIQRETGCK 81
>SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 656
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +2
Query: 188 EGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLE---IIKKTGKKTTY 352
EG + ++ ++ +G+E+ + +PE+KV + ++ +E + K GK T Y
Sbjct: 50 EGMANNIKLAKHKAAEKGLENCGLCMPEKKVVISRPVNLTPTVELNGLAMKLGKTTQY 107
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,042,498
Number of Sequences: 59808
Number of extensions: 444195
Number of successful extensions: 851
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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