BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0645 (750 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_44018| Best HMM Match : HMA (HMM E-Value=2.7e-06) 66 2e-11 SB_4088| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0 SB_29518| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0 SB_948| Best HMM Match : Sec62 (HMM E-Value=9.5) 29 4.0 SB_48975| Best HMM Match : zf-CHY (HMM E-Value=8.5) 29 4.0 SB_31615| Best HMM Match : GCC2_GCC3 (HMM E-Value=0.053) 29 4.0 SB_13816| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0 SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 28 7.0 SB_44628| Best HMM Match : efhand (HMM E-Value=2.8e-11) 28 7.0 SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3 >SB_44018| Best HMM Match : HMA (HMM E-Value=2.7e-06) Length = 60 Score = 66.5 bits (155), Expect = 2e-11 Identities = 33/60 (55%), Positives = 44/60 (73%) Frame = +2 Query: 179 MTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEIIKKTGKKTTYVG 358 MTC+GCSGAVERVL ++ V +I I L ++V V STLS+D+LL IKK GK+ +Y+G Sbjct: 1 MTCKGCSGAVERVLKKVPD--VANIEIDLEMKRVFVTSTLSSDELLATIKKAGKEASYIG 58 >SB_4088| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 895 Score = 29.5 bits (63), Expect = 3.0 Identities = 17/48 (35%), Positives = 25/48 (52%) Frame = -1 Query: 288 LTDTFCSGKLIDISSTPCPFSLLRTRSTAPEQPSQVISTLNMCVVVIL 145 L D +GKL DI + P ++LR + E+ SQ + VVVI+ Sbjct: 716 LADELKNGKLGDIDADPNSLTILRPQEKEQEESSQTEIVVIAVVVVIV 763 >SB_29518| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 411 Score = 29.1 bits (62), Expect = 4.0 Identities = 17/48 (35%), Positives = 24/48 (50%) Frame = -1 Query: 288 LTDTFCSGKLIDISSTPCPFSLLRTRSTAPEQPSQVISTLNMCVVVIL 145 L D GKL DI++ P +LR + E+ SQ + VVVI+ Sbjct: 309 LADELKDGKLGDINADPNSLKILRPQEKEQEESSQTEIVVIAVVVVIV 356 >SB_948| Best HMM Match : Sec62 (HMM E-Value=9.5) Length = 306 Score = 29.1 bits (62), Expect = 4.0 Identities = 17/48 (35%), Positives = 24/48 (50%) Frame = -1 Query: 288 LTDTFCSGKLIDISSTPCPFSLLRTRSTAPEQPSQVISTLNMCVVVIL 145 L D GKL DI++ P +LR + E+ SQ + VVVI+ Sbjct: 126 LADELKDGKLGDINADPNSLKILRPQEKEQEESSQTEIVVIAVVVVIV 173 >SB_48975| Best HMM Match : zf-CHY (HMM E-Value=8.5) Length = 278 Score = 29.1 bits (62), Expect = 4.0 Identities = 10/24 (41%), Positives = 17/24 (70%) Frame = +3 Query: 456 AIIYKLTLYLIKMYNFISYSGYSC 527 AI+YK+T+ +++ Y+ S GY C Sbjct: 3 AILYKVTIAIVQFYDCHSVQGYDC 26 >SB_31615| Best HMM Match : GCC2_GCC3 (HMM E-Value=0.053) Length = 870 Score = 29.1 bits (62), Expect = 4.0 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%) Frame = -3 Query: 286 NRYLLFW*TN----RYILYTLPLQSVENSFDGARTTFTGHFYVEYVCR 155 N Y W +N +YI +T LQ N++ +TF G F ++CR Sbjct: 138 NGYFWSWRSNAEKEQYINFTSQLQIFNNTYSRNLSTFNGSFPQPHLCR 185 >SB_13816| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 255 Score = 29.1 bits (62), Expect = 4.0 Identities = 17/48 (35%), Positives = 24/48 (50%) Frame = -1 Query: 288 LTDTFCSGKLIDISSTPCPFSLLRTRSTAPEQPSQVISTLNMCVVVIL 145 L D GKL DI++ P +LR + E+ SQ + VVVI+ Sbjct: 76 LADELKDGKLGDINADPNSLKILRPQEKEQEESSQTEIVVIAVVVVIV 123 >SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) Length = 833 Score = 28.3 bits (60), Expect = 7.0 Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 1/34 (2%) Frame = +2 Query: 164 IFNVEMTC-EGCSGAVERVLNRLKGQGVEDISIS 262 +++VE+ C E G + VLNR +GQ +E+ +++ Sbjct: 719 VYSVEIQCPESAVGGIYGVLNRRRGQVLEESNVA 752 >SB_44628| Best HMM Match : efhand (HMM E-Value=2.8e-11) Length = 205 Score = 28.3 bits (60), Expect = 7.0 Identities = 23/80 (28%), Positives = 35/80 (43%) Frame = +2 Query: 104 SYSLFHIVYVYSYSKMTTTHIFNVEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVS 283 ++ L H+V S + H+ GC+G V KGQ D+ S + + Sbjct: 4 NFILVHLVVTVPSSGLHPKHLCTPSPKGVGCTG-VPGEGGYSKGQ-CHDVPPSYLKMGLK 61 Query: 284 VKSTLSADDLLEIIKKTGKK 343 S L +DL EI ++TG K Sbjct: 62 SSSLLQEEDLAEIQRETGCK 81 >SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 656 Score = 27.9 bits (59), Expect = 9.3 Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 3/58 (5%) Frame = +2 Query: 188 EGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLE---IIKKTGKKTTY 352 EG + ++ ++ +G+E+ + +PE+KV + ++ +E + K GK T Y Sbjct: 50 EGMANNIKLAKHKAAEKGLENCGLCMPEKKVVISRPVNLTPTVELNGLAMKLGKTTQY 107 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 22,042,498 Number of Sequences: 59808 Number of extensions: 444195 Number of successful extensions: 851 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 783 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 850 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 2034222073 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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