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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0645
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44018| Best HMM Match : HMA (HMM E-Value=2.7e-06)                   66   2e-11
SB_4088| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.0  
SB_29518| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_948| Best HMM Match : Sec62 (HMM E-Value=9.5)                       29   4.0  
SB_48975| Best HMM Match : zf-CHY (HMM E-Value=8.5)                    29   4.0  
SB_31615| Best HMM Match : GCC2_GCC3 (HMM E-Value=0.053)               29   4.0  
SB_13816| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    28   7.0  
SB_44628| Best HMM Match : efhand (HMM E-Value=2.8e-11)                28   7.0  
SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  

>SB_44018| Best HMM Match : HMA (HMM E-Value=2.7e-06)
          Length = 60

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 33/60 (55%), Positives = 44/60 (73%)
 Frame = +2

Query: 179 MTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEIIKKTGKKTTYVG 358
           MTC+GCSGAVERVL ++    V +I I L  ++V V STLS+D+LL  IKK GK+ +Y+G
Sbjct: 1   MTCKGCSGAVERVLKKVPD--VANIEIDLEMKRVFVTSTLSSDELLATIKKAGKEASYIG 58


>SB_4088| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 895

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -1

Query: 288 LTDTFCSGKLIDISSTPCPFSLLRTRSTAPEQPSQVISTLNMCVVVIL 145
           L D   +GKL DI + P   ++LR +    E+ SQ    +   VVVI+
Sbjct: 716 LADELKNGKLGDIDADPNSLTILRPQEKEQEESSQTEIVVIAVVVVIV 763


>SB_29518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -1

Query: 288 LTDTFCSGKLIDISSTPCPFSLLRTRSTAPEQPSQVISTLNMCVVVIL 145
           L D    GKL DI++ P    +LR +    E+ SQ    +   VVVI+
Sbjct: 309 LADELKDGKLGDINADPNSLKILRPQEKEQEESSQTEIVVIAVVVVIV 356


>SB_948| Best HMM Match : Sec62 (HMM E-Value=9.5)
          Length = 306

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -1

Query: 288 LTDTFCSGKLIDISSTPCPFSLLRTRSTAPEQPSQVISTLNMCVVVIL 145
           L D    GKL DI++ P    +LR +    E+ SQ    +   VVVI+
Sbjct: 126 LADELKDGKLGDINADPNSLKILRPQEKEQEESSQTEIVVIAVVVVIV 173


>SB_48975| Best HMM Match : zf-CHY (HMM E-Value=8.5)
          Length = 278

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 456 AIIYKLTLYLIKMYNFISYSGYSC 527
           AI+YK+T+ +++ Y+  S  GY C
Sbjct: 3   AILYKVTIAIVQFYDCHSVQGYDC 26


>SB_31615| Best HMM Match : GCC2_GCC3 (HMM E-Value=0.053)
          Length = 870

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = -3

Query: 286 NRYLLFW*TN----RYILYTLPLQSVENSFDGARTTFTGHFYVEYVCR 155
           N Y   W +N    +YI +T  LQ   N++    +TF G F   ++CR
Sbjct: 138 NGYFWSWRSNAEKEQYINFTSQLQIFNNTYSRNLSTFNGSFPQPHLCR 185


>SB_13816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -1

Query: 288 LTDTFCSGKLIDISSTPCPFSLLRTRSTAPEQPSQVISTLNMCVVVIL 145
           L D    GKL DI++ P    +LR +    E+ SQ    +   VVVI+
Sbjct: 76  LADELKDGKLGDINADPNSLKILRPQEKEQEESSQTEIVVIAVVVVIV 123


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +2

Query: 164 IFNVEMTC-EGCSGAVERVLNRLKGQGVEDISIS 262
           +++VE+ C E   G +  VLNR +GQ +E+ +++
Sbjct: 719 VYSVEIQCPESAVGGIYGVLNRRRGQVLEESNVA 752


>SB_44628| Best HMM Match : efhand (HMM E-Value=2.8e-11)
          Length = 205

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 23/80 (28%), Positives = 35/80 (43%)
 Frame = +2

Query: 104 SYSLFHIVYVYSYSKMTTTHIFNVEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVS 283
           ++ L H+V     S +   H+        GC+G V       KGQ   D+  S  +  + 
Sbjct: 4   NFILVHLVVTVPSSGLHPKHLCTPSPKGVGCTG-VPGEGGYSKGQ-CHDVPPSYLKMGLK 61

Query: 284 VKSTLSADDLLEIIKKTGKK 343
             S L  +DL EI ++TG K
Sbjct: 62  SSSLLQEEDLAEIQRETGCK 81


>SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 656

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +2

Query: 188 EGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLE---IIKKTGKKTTY 352
           EG +  ++   ++   +G+E+  + +PE+KV +   ++    +E   +  K GK T Y
Sbjct: 50  EGMANNIKLAKHKAAEKGLENCGLCMPEKKVVISRPVNLTPTVELNGLAMKLGKTTQY 107


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,042,498
Number of Sequences: 59808
Number of extensions: 444195
Number of successful extensions: 851
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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