Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0645
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14429-10|AAL00882.1|   69|Caenorhabditis elegans Cu (copper) ch...    56   3e-08
AB017201-1|BAA37144.1|   69|Caenorhabditis elegans copper chaper...    56   3e-08
U97002-8|AAB52265.2|  166|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z99281-35|CAB16518.2|  524|Caenorhabditis elegans Hypothetical p...    29   4.7  
AF016447-9|AAG24009.1|  233|Caenorhabditis elegans Hypothetical ...    28   6.2  
Z83241-5|CAH10791.1| 1183|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z83241-4|CAB05819.3| 1181|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z81120-11|CAH10815.1| 1183|Caenorhabditis elegans Hypothetical p...    28   8.1  
Z81120-10|CAB03350.3| 1181|Caenorhabditis elegans Hypothetical p...    28   8.1  
Z75711-6|CAB00037.3|  387|Caenorhabditis elegans Hypothetical pr...    28   8.1  
U97008-2|AAB52309.1|  336|Caenorhabditis elegans Serpentine rece...    28   8.1  

>L14429-10|AAL00882.1|   69|Caenorhabditis elegans Cu (copper)
           chaperonin protein 1 protein.
          Length = 69

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 24/63 (38%), Positives = 41/63 (65%)
 Frame = +2

Query: 155 TTHIFNVEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEIIKKT 334
           T ++F + MTC GC+ A  +VL +L    ++   I++  +K++V + L A D+LE +KKT
Sbjct: 2   TQYVFEMGMTCNGCANAARKVLGKLGEDKIKIDDINVETKKITVTTDLPASDVLEALKKT 61

Query: 335 GKK 343
           GK+
Sbjct: 62  GKE 64


>AB017201-1|BAA37144.1|   69|Caenorhabditis elegans copper chaperone
           protein.
          Length = 69

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 24/63 (38%), Positives = 41/63 (65%)
 Frame = +2

Query: 155 TTHIFNVEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEIIKKT 334
           T ++F + MTC GC+ A  +VL +L    ++   I++  +K++V + L A D+LE +KKT
Sbjct: 2   TQYVFEMGMTCNGCANAARKVLGKLGEDKIKIDDINVETKKITVTTDLPASDVLEALKKT 61

Query: 335 GKK 343
           GK+
Sbjct: 62  GKE 64


>U97002-8|AAB52265.2|  166|Caenorhabditis elegans Hypothetical
           protein K09H11.6 protein.
          Length = 166

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = +1

Query: 562 IAYLPDFTSTYHKL*LISIPYILCTLLIVVKCLLYSTLIGIDVAALGKWYKLGTMVGXF 738
           I YL +   T  K   +  P+I+C LL ++ C+L S +  + V     +Y + + +G F
Sbjct: 71  IVYLMNRGITLQKAHYLQ-PFIICALLHLIICILLSAIFFLYVVTRATFYSVWSDLGFF 128


>Z99281-35|CAB16518.2|  524|Caenorhabditis elegans Hypothetical
           protein Y57G11C.17 protein.
          Length = 524

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 328 ENWQEN-HICWCSVELAGWFLIPQNLWLFWMLKIIM 432
           E WQ+   ICW SV+ A WF      W F  +++I+
Sbjct: 237 ETWQKTTEICWNSVKCALWFGFRLVFW-FGFIELIL 271


>AF016447-9|AAG24009.1|  233|Caenorhabditis elegans Hypothetical
           protein C54F6.4 protein.
          Length = 233

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/26 (42%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
 Frame = +1

Query: 607 LISIPYILCTLLIVVKCL--LYSTLI 678
           +I++P++LC + ++V+CL  LY  LI
Sbjct: 140 VITLPFVLCLVQLIVQCLWNLYGILI 165


>Z83241-5|CAH10791.1| 1183|Caenorhabditis elegans Hypothetical
           protein T12D8.9b protein.
          Length = 1183

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 310 FTRNN*ENWQENHICWCSVELA 375
           F RNN + WQE   CW + E+A
Sbjct: 122 FGRNNQKPWQELADCWATSEIA 143


>Z83241-4|CAB05819.3| 1181|Caenorhabditis elegans Hypothetical
           protein T12D8.9a protein.
          Length = 1181

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 310 FTRNN*ENWQENHICWCSVELA 375
           F RNN + WQE   CW + E+A
Sbjct: 120 FGRNNQKPWQELADCWATSEIA 141


>Z81120-11|CAH10815.1| 1183|Caenorhabditis elegans Hypothetical
           protein T12D8.9b protein.
          Length = 1183

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 310 FTRNN*ENWQENHICWCSVELA 375
           F RNN + WQE   CW + E+A
Sbjct: 122 FGRNNQKPWQELADCWATSEIA 143


>Z81120-10|CAB03350.3| 1181|Caenorhabditis elegans Hypothetical
           protein T12D8.9a protein.
          Length = 1181

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 310 FTRNN*ENWQENHICWCSVELA 375
           F RNN + WQE   CW + E+A
Sbjct: 120 FGRNNQKPWQELADCWATSEIA 141


>Z75711-6|CAB00037.3|  387|Caenorhabditis elegans Hypothetical
           protein K02B12.8 protein.
          Length = 387

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -1

Query: 249 SSTPCPFSLLRTRSTAPE-QPSQVISTLNM 163
           S TP PFSL  ++ TAP    S   ST NM
Sbjct: 174 SQTPFPFSLAESQETAPSLVESSANSTFNM 203


>U97008-2|AAB52309.1|  336|Caenorhabditis elegans Serpentine
           receptor, class h protein244 protein.
          Length = 336

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
 Frame = -1

Query: 495 TF*LNIVLVYRL*LFIITLF---YHNDFEHPKEPQILWYQKPTS*FY*APTYVVFLPVFL 325
           TF + + LV  +   I++++   YH  F H    + +  +KP   F       +FLP FL
Sbjct: 99  TFYIGVTLVLAMIAAILSIYENRYHKLFGHKTTWKAV--RKPYLIFVYISVPFIFLPPFL 156

Query: 324 IISSKSSALSVDLTDTFC 271
           II  + +A S  L    C
Sbjct: 157 IIPEQENARSFILDKLPC 174


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,006,748
Number of Sequences: 27780
Number of extensions: 360916
Number of successful extensions: 829
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)