Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0645
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   3.1  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   4.0  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   5.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   7.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   9.3  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +1

Query: 334 WQENHICWCSVELAGWFLIPQNLWLFWMLKIIM 432
           W+++H+ W S E      I    +  W+  I+M
Sbjct: 90  WEQSHLTWKSSEFDSINSIRVKSYEIWVPDIVM 122


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 179 MTCEGCSGAVERVLNR 226
           +TCEGC G   R + +
Sbjct: 202 LTCEGCKGFFRRSITK 217


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 352 CWCSVELAGWFLIPQNLWLFWMLKIIMVKQCNNEQL 459
           C   V LA W  I   + L+++ KII ++   +++L
Sbjct: 387 CLTVVCLAFWSFIVSTILLWFINKIIPIRMSIHDEL 422


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = +1

Query: 475 HYI*SKCIILSHILAIHVYCSLMVSP 552
           H + ++ ++ +H+L IH    + V+P
Sbjct: 383 HAVRNQDVVQTHVLTIHTIPEVKVTP 408


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +1

Query: 529 YCSLMVSPTK*IAYLPDFTSTYHKL 603
           Y +  V+P     + P+F   +HKL
Sbjct: 667 YMNSFVNPVIYTVFNPEFRKAFHKL 691


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,086
Number of Sequences: 438
Number of extensions: 4723
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)