Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0645
(750 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g66240.1 68414.m07519 copper homeostasis factor, putative / c... 77 1e-14
At3g56240.1 68416.m06250 copper homeostasis factor / copper chap... 66 2e-11
At1g12520.1 68414.m01449 superoxide dismutase copper chaperone, ... 46 4e-05
At5g17450.1 68418.m02047 heavy-metal-associated domain-containin... 44 1e-04
At5g27690.1 68418.m03321 heavy-metal-associated domain-containin... 43 3e-04
At5g17450.2 68418.m02048 heavy-metal-associated domain-containin... 42 4e-04
At4g39700.1 68417.m05618 heavy-metal-associated domain-containin... 42 6e-04
At3g21490.1 68416.m02711 copper-binding family protein similar t... 41 0.001
At1g06330.1 68414.m00669 copper-binding family protein similar t... 40 0.001
At5g24580.2 68418.m02903 copper-binding family protein similar t... 40 0.002
At5g24580.1 68418.m02902 copper-binding family protein similar t... 40 0.002
At4g08570.1 68417.m01409 heavy-metal-associated domain-containin... 40 0.002
At5g63530.1 68418.m07974 copper chaperone (CCH)-related low simi... 40 0.002
At2g36950.1 68415.m04531 heavy-metal-associated domain-containin... 40 0.002
At1g71050.1 68414.m08200 heavy-metal-associated domain-containin... 40 0.002
At1g23000.1 68414.m02874 heavy-metal-associated domain-containin... 40 0.002
At5g03380.1 68418.m00291 heavy-metal-associated domain-containin... 39 0.004
At1g56210.1 68414.m06460 copper chaperone (CCH)-related low simi... 39 0.004
At5g60800.1 68418.m07628 heavy-metal-associated domain-containin... 38 0.005
At3g48970.1 68416.m05349 copper-binding family protein similar t... 38 0.005
At2g18196.1 68415.m02118 copper chaperone (CCH)-related low simi... 38 0.007
At1g63440.1 68414.m07174 copper-exporting ATPase, putative / res... 38 0.009
At1g29100.1 68414.m03562 copper-binding family protein similar t... 38 0.009
At3g06130.1 68416.m00704 heavy-metal-associated domain-containin... 37 0.012
At2g37390.1 68415.m04585 heavy-metal-associated domain-containin... 36 0.022
At4g35060.1 68417.m04977 heavy-metal-associated domain-containin... 36 0.029
At2g28090.1 68415.m03412 heavy-metal-associated domain-containin... 36 0.029
At1g22990.1 68414.m02873 heavy-metal-associated domain-containin... 36 0.029
At5g19090.2 68418.m02270 heavy-metal-associated domain-containin... 35 0.050
At5g19090.1 68418.m02269 heavy-metal-associated domain-containin... 35 0.050
At3g05220.1 68416.m00569 heavy-metal-associated domain-containin... 35 0.050
At2g28660.1 68415.m03484 copper-binding family protein similar t... 35 0.050
At5g02600.2 68418.m00195 heavy-metal-associated domain-containin... 35 0.066
At5g02600.1 68418.m00196 heavy-metal-associated domain-containin... 35 0.066
At3g02960.1 68416.m00291 copper-binding protein-related low simi... 35 0.066
At4g27590.1 68417.m03963 copper-binding protein-related low simi... 34 0.088
At5g50740.1 68418.m06287 copper chaperone (CCH)-related low simi... 34 0.12
At3g24450.1 68416.m03068 copper-binding family protein similar t... 34 0.12
At4g38580.1 68417.m05461 heavy-metal-associated domain-containin... 32 0.35
At5g26690.1 68418.m03170 heavy-metal-associated domain-containin... 32 0.47
At5g16640.1 68418.m01948 pentatricopeptide (PPR) repeat-containi... 32 0.47
At3g53530.1 68416.m05911 heavy-metal-associated domain-containin... 32 0.47
At5g66110.1 68418.m08328 heavy-metal-associated domain-containin... 31 0.82
At3g11960.2 68416.m01476 cleavage and polyadenylation specificit... 31 0.82
At3g11960.1 68416.m01475 cleavage and polyadenylation specificit... 31 0.82
At1g64580.1 68414.m07320 pentatricopeptide (PPR) repeat-containi... 31 1.1
At1g63080.1 68414.m07126 pentatricopeptide (PPR) repeat-containi... 28 7.6
>At1g66240.1 68414.m07519 copper homeostasis factor, putative /
copper chaperone, putative (CCH) similar to gi:3168840
contains Pfam profile PF00403: Heavy-metal-associated
domain
Length = 106
Score = 77.0 bits (181), Expect = 1e-14
Identities = 38/87 (43%), Positives = 54/87 (62%)
Frame = +2
Query: 104 SYSLFHIVYVYSYSKMTTTHIFNVEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVS 283
S SLF + V M+ T + V MTCEGC GAV+RVL ++ +GVE + + EQKV+
Sbjct: 16 SLSLFQALSVVESKAMSQTVVLRVAMTCEGCVGAVKRVLGKM--EGVESFDVDIKEQKVT 73
Query: 284 VKSTLSADDLLEIIKKTGKKTTYVGAQ 364
VK + D +L+ + KTGKKT + A+
Sbjct: 74 VKGNVQPDAVLQTVTKTGKKTAFWEAE 100
>At3g56240.1 68416.m06250 copper homeostasis factor / copper
chaperone (CCH) (ATX1) identical to gi:3168840 Pfam
profile PF00403: Heavy-metal-associated domain
Length = 121
Score = 66.1 bits (154), Expect = 2e-11
Identities = 30/68 (44%), Positives = 44/68 (64%)
Frame = +2
Query: 149 MTTTHIFNVEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEIIK 328
M T + V M+C+GC GAV RVL ++ +GVE I + EQKV+VK + + + + +
Sbjct: 1 MAQTVVLKVGMSCQGCVGAVNRVLGKM--EGVESFDIDIKEQKVTVKGNVEPEAVFQTVS 58
Query: 329 KTGKKTTY 352
KTGKKT+Y
Sbjct: 59 KTGKKTSY 66
>At1g12520.1 68414.m01449 superoxide dismutase copper chaperone,
putative similar to copper chaperone for superoxide
dismutase [Homo sapiens] gi|2431868|gb|AAC51764
Length = 254
Score = 45.6 bits (103), Expect = 4e-05
Identities = 20/64 (31%), Positives = 36/64 (56%)
Frame = +2
Query: 167 FNVEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEIIKKTGKKT 346
F V+MTCEGC AV+ L + +G+E + + L Q V + + + + +++TG+K
Sbjct: 25 FMVDMTCEGCVNAVKNKLETI--EGIEKVEVDLSNQVVRILGSSPVKAMTQALEQTGRKA 82
Query: 347 TYVG 358
+G
Sbjct: 83 RLIG 86
>At5g17450.1 68418.m02047 heavy-metal-associated domain-containing
protein / copper chaperone (CCH)-related similar to
copper homeostasis factor [Arabidopsis
thaliana][GI:3168840], and farnesylated proteins GMFP7
[Glycine max][GI:4097573], ATFP7 [GI:4097555], and ATFP6
[GI:4097553]; contains heavy-metal-associated domain
PF00403
Length = 149
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/60 (30%), Positives = 36/60 (60%)
Frame = +2
Query: 173 VEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEIIKKTGKKTTY 352
V+M C+GC V V+ R+K GV+ + ++ + +++V + + +L+ +K TGKK +
Sbjct: 32 VKMDCDGCERRVRNVVRRMK--GVKSVEVNRKQSRITVNGHVDPNKVLKRVKSTGKKAEF 89
>At5g27690.1 68418.m03321 heavy-metal-associated domain-containing
protein very low similarity to copper homeostasis factor
from Arabidopsis thaliana [gi:3168840]; contains Pfam
heavy metal associated domain PF00403
Length = 352
Score = 42.7 bits (96), Expect = 3e-04
Identities = 21/74 (28%), Positives = 40/74 (54%)
Frame = +2
Query: 119 HIVYVYSYSKMTTTHIFNVEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTL 298
H+ Y TT + V + CEGC ++++L+++ GV +I + +QKV+V +
Sbjct: 18 HVFEDYPEPLRYTTWVLRVSIHCEGCKRKIKKILSKI--DGVYTTNIDVKQQKVTVIGNV 75
Query: 299 SADDLLEIIKKTGK 340
+ L++ I K G+
Sbjct: 76 EPEILIKKIMKAGR 89
>At5g17450.2 68418.m02048 heavy-metal-associated domain-containing
protein / copper chaperone (CCH)-related similar to
copper homeostasis factor [Arabidopsis
thaliana][GI:3168840], and farnesylated proteins GMFP7
[Glycine max][GI:4097573], ATFP7 [GI:4097555], and ATFP6
[GI:4097553]; contains heavy-metal-associated domain
PF00403
Length = 116
Score = 41.9 bits (94), Expect = 4e-04
Identities = 17/58 (29%), Positives = 34/58 (58%)
Frame = +2
Query: 179 MTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEIIKKTGKKTTY 352
M C+GC V V+ R+K GV+ + ++ + +++V + + +L+ +K TGKK +
Sbjct: 1 MDCDGCERRVRNVVRRMK--GVKSVEVNRKQSRITVNGHVDPNKVLKRVKSTGKKAEF 56
>At4g39700.1 68417.m05618 heavy-metal-associated domain-containing
protein / copper chaperone (CCH)-related low similarity
to copper homeostasis factor [GI:3168840][PMID:9701579];
similar to farnesylated proteins GMFP7 [Glycine
max][GI:4097573] and ATFP7 [GI:4097555]; contains
heavy-metal-associated domain PF00403
Length = 158
Score = 41.5 bits (93), Expect = 6e-04
Identities = 24/66 (36%), Positives = 35/66 (53%)
Frame = +2
Query: 146 KMTTTHIFNVEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEII 325
K T V M C+GC ++ L+ LKG V+ + I+ +QKV+V A +L+
Sbjct: 29 KQFQTVELKVRMDCDGCVLKIKNSLSSLKG--VKTVEINKKQQKVTVSGYADASKVLKKA 86
Query: 326 KKTGKK 343
K TGKK
Sbjct: 87 KATGKK 92
>At3g21490.1 68416.m02711 copper-binding family protein similar to
copper homeostasis factor gi:3168840 from Arabidopsis
thaliana; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 136
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +2
Query: 167 FNVEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLL-EIIKKTGKK 343
FNV M C C + RV+++ K GVE + KV V+ + + LL ++ KKTGK+
Sbjct: 18 FNVSMHCNDCERKIARVISKFK--GVETFVTDMINHKVVVRGKIDPNKLLKKLKKKTGKR 75
Query: 344 TTYV 355
V
Sbjct: 76 VKIV 79
>At1g06330.1 68414.m00669 copper-binding family protein similar to
copper homeostasis factor gi:3168840 from Arabidopsis
thaliana; contains Pfam heavy-metal-associated domain
PF00403
Length = 159
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/57 (31%), Positives = 33/57 (57%)
Frame = +2
Query: 173 VEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEIIKKTGKK 343
V M C GC V+ L +++G V+ + I + +QKV+V +L+ ++KTG++
Sbjct: 17 VHMDCVGCESRVKNALQKMRG--VDAVEIDMVQQKVTVTGYADQKKVLKKVRKTGRR 71
>At5g24580.2 68418.m02903 copper-binding family protein similar to
copper homeostasis factor gi:3168840 from Arabidopsis
thaliana; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 318
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/64 (32%), Positives = 36/64 (56%)
Frame = +2
Query: 164 IFNVEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEIIKKTGKK 343
I V++ C GC+ +ER + LK +GVE++ + + E +V++K L + IKK K+
Sbjct: 58 ILYVDLHCVGCAKKIERSI--LKIRGVEEVVMDMNENQVTIKGVLDPQAVCNKIKKKTKR 115
Query: 344 TTYV 355
V
Sbjct: 116 MAKV 119
>At5g24580.1 68418.m02902 copper-binding family protein similar to
copper homeostasis factor gi:3168840 from Arabidopsis
thaliana; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 319
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/64 (32%), Positives = 36/64 (56%)
Frame = +2
Query: 164 IFNVEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEIIKKTGKK 343
I V++ C GC+ +ER + LK +GVE++ + + E +V++K L + IKK K+
Sbjct: 59 ILYVDLHCVGCAKKIERSI--LKIRGVEEVVMDMNENQVTIKGVLDPQAVCNKIKKKTKR 116
Query: 344 TTYV 355
V
Sbjct: 117 MAKV 120
>At4g08570.1 68417.m01409 heavy-metal-associated domain-containing
protein / copper chaperone (CCH)-related low similarity
to copper homeostasis factor [GI:3168840][PMID:9701579];
similar to farnesylated proteins GMFP7 [Glycine
max][GI:4097573] and ATFP7 [GI:4097555]; contains
heavy-metal-associated domain PF00403
Length = 150
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/66 (31%), Positives = 35/66 (53%)
Frame = +2
Query: 146 KMTTTHIFNVEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEII 325
+M T + + CEGC ++ VL+ +K GV+ + + + QKV+V + +LE
Sbjct: 24 QMQTVALRVARIDCEGCERKIKHVLSGVK--GVKSVDVDVKLQKVTVTGYIDPKKVLEAA 81
Query: 326 KKTGKK 343
K T KK
Sbjct: 82 KSTKKK 87
>At5g63530.1 68418.m07974 copper chaperone (CCH)-related low
similarity to copper homeostasis factor [GI:3168840];
nearly identical to farnesylated protein ATFP3
[GI:4097547]; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 355
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +2
Query: 149 MTTTHIFNVEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLE-II 325
+ T + V M CE C+ +++ + R+K GVE L +V+VK L+E +
Sbjct: 169 VVVTVVLKVHMHCEACATEIKKRIMRMK--GVESAESDLKSSQVTVKGVFEPQKLVEYVY 226
Query: 326 KKTGK 340
K+TGK
Sbjct: 227 KRTGK 231
Score = 34.7 bits (76), Expect = 0.066
Identities = 21/61 (34%), Positives = 31/61 (50%)
Frame = +2
Query: 164 IFNVEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEIIKKTGKK 343
+ V M CEGC+ V R L +GVED+ KV VK + D L+++ + +K
Sbjct: 76 VLKVYMHCEGCARKVRRCLKGF--EGVEDVMTDCKTGKVVVKGEKA--DPLKVLARVQRK 131
Query: 344 T 346
T
Sbjct: 132 T 132
>At2g36950.1 68415.m04531 heavy-metal-associated domain-containing
protein nearly identical to farnesylated protein ATFP2
[GI:4097545] Pfam profile PF00403:
Heavy-metal-associated domain
Length = 386
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/58 (29%), Positives = 36/58 (62%)
Frame = +2
Query: 173 VEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEIIKKTGKKT 346
+ + CEGC +++++ ++KG VE ++I + V+VK T+ +L+ ++ K K+T
Sbjct: 160 IRLHCEGCIQKIKKIILKIKG--VETVAIDGAKDVVTVKGTIDVKELVPLLTKKLKRT 215
Score = 32.3 bits (70), Expect = 0.35
Identities = 15/65 (23%), Positives = 34/65 (52%)
Frame = +2
Query: 149 MTTTHIFNVEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEIIK 328
+ + ++ V+M CEGC+ ++R++ GV+D++ K+ V + L E ++
Sbjct: 48 VVSAFVYKVDMHCEGCAKKIKRMVKHF--DGVKDVTADTGGNKLLVVGKIDPVKLQEKLE 105
Query: 329 KTGKK 343
+ K+
Sbjct: 106 EKTKR 110
>At1g71050.1 68414.m08200 heavy-metal-associated domain-containing
protein / copper chaperone (CCH)-related low similarity
to copper homeostasis factor [GI:3168840][PMID:9701579];
similar to farnesylated protein ATFP7 [GI:4097555];
contains heavy-metal-associated domain PF00403
Length = 152
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/65 (32%), Positives = 38/65 (58%)
Frame = +2
Query: 149 MTTTHIFNVEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEIIK 328
M T +I V+M C+GC V+ ++ +K GV+ + ++ KV+V + +L+ I+
Sbjct: 27 MQTVNI-KVKMDCDGCERRVKNAVSSMK--GVKSVEVNRKIHKVTVSGYVEPKKVLKRIE 83
Query: 329 KTGKK 343
+TGKK
Sbjct: 84 RTGKK 88
>At1g23000.1 68414.m02874 heavy-metal-associated domain-containing
protein similar to farnesylated protein ATFP3
[GI:4097547]; contains PF00403 Heavy-metal-associated
domain
Length = 358
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +2
Query: 158 THIFNVEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEIIKKTG 337
T V + CEGC+ V+++L R+ +GV + I QKV+V ++ + L+ + K G
Sbjct: 14 TFSLRVNIHCEGCNKKVKKLLQRI--EGVCHVKIEAEHQKVTVSGSVDSATLINKLVKAG 71
Query: 338 K 340
K
Sbjct: 72 K 72
>At5g03380.1 68418.m00291 heavy-metal-associated domain-containing
protein similar to farnesylated protein ATFP2
[GI:4097545]; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 392
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/67 (26%), Positives = 35/67 (52%)
Frame = +2
Query: 155 TTHIFNVEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEIIKKT 334
+T + ++ CEGC ++R++N++K GV ++I + V VK + L + +
Sbjct: 154 STVVLKTKLHCEGCEHKIKRIVNKIK--GVNSVAIDSAKDLVIVKGIIDVKQLTPYLNEK 211
Query: 335 GKKTTYV 355
K+T V
Sbjct: 212 LKRTVEV 218
Score = 37.5 bits (83), Expect = 0.009
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +2
Query: 155 TTHIFNVEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSV 286
TT + ++M CEGC ++R+ K GVED+ I K++V
Sbjct: 24 TTVVMKLDMHCEGCGKKIKRIFKHFK--GVEDVKIDYKSNKLTV 65
>At1g56210.1 68414.m06460 copper chaperone (CCH)-related low
similarity to copper homeostasis factor
[GI:3168840][PMID:9701579] and farnesylated proteins
ATFP3 [GI:4097547] and GMFP7 [Glycine max][GI:4097573];
contains PF00403 Heavy-metal-associated domain
Length = 364
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/56 (33%), Positives = 33/56 (58%)
Frame = +2
Query: 173 VEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEIIKKTGK 340
V + CEGC V+++L + +GV + I + + KV+V +S + LL+ + K GK
Sbjct: 46 VSIHCEGCKRKVKKILTSI--EGVFKVDIDVKQHKVTVIGIISPEILLKKLNKAGK 99
>At5g60800.1 68418.m07628 heavy-metal-associated domain-containing
protein similar to farnesylated protein ATFP3
[GI:4097547]; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 283
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/67 (23%), Positives = 36/67 (53%)
Frame = +2
Query: 155 TTHIFNVEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEIIKKT 334
TT + + C+GC G +++ + + K GV +++ + ++VK T+ L+EI+ +
Sbjct: 133 TTAVLKLNFHCQGCIGKIQKTVTKTK--GVNGLTMDKEKNLLTVKGTMDVKKLVEILSEK 190
Query: 335 GKKTTYV 355
K+ +
Sbjct: 191 LKRAVEI 197
Score = 34.3 bits (75), Expect = 0.088
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +2
Query: 158 THIFNVEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLE-IIKKT 334
T + V+M CEGC+ + + + QGVE + K++V L L E + +KT
Sbjct: 27 TVVLKVDMHCEGCASRIVKCVRSF--QGVETVKSESATGKLTVTGALDPVKLREKLEEKT 84
Query: 335 GKKTTYVGAQ 364
KK V Q
Sbjct: 85 KKKVDLVSPQ 94
>At3g48970.1 68416.m05349 copper-binding family protein similar to
copper homeostasis factor gi:3168840 from Arabidopsis
thaliana; contains Pfam heavy-metal-associated domain
PF00403
Length = 140
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +2
Query: 155 TTHIFNVEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKS-TLSADDLLEIIKK 331
T I + CEGC+ + + L +LK GVE++ + + QKV+ + L +L+ +++
Sbjct: 4 TVEIRVPNLDCEGCASKLRKTLLKLK--GVEEVEVEMETQKVTARGYRLEEKKVLKAVRR 61
Query: 332 TGK 340
GK
Sbjct: 62 AGK 64
>At2g18196.1 68415.m02118 copper chaperone (CCH)-related low
similarity to copper chaperone homolog CCH [Glycine max]
GI:6525011 contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 142
Score = 37.9 bits (84), Expect = 0.007
Identities = 15/60 (25%), Positives = 34/60 (56%)
Frame = +2
Query: 173 VEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEIIKKTGKKTTY 352
V M C GC V+ + +L+G V+ + ++L ++V+V + +L+ +++ GK+ +
Sbjct: 16 VRMCCSGCERVVKHAIYKLRG--VDSVEVNLEMERVTVVGYVERKKVLKAVRRAGKRAEF 73
>At1g63440.1 68414.m07174 copper-exporting ATPase, putative /
responsive-to-antagonist 1, putative /
copper-transporting ATPase, putative similar to ATP
dependent copper transporter SP|Q9S7J8 [Arabidopsis
thaliana]
Length = 995
Score = 37.5 bits (83), Expect = 0.009
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 179 MTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSA-DDLLEIIKKTG 337
MTC CS +ERVL + G +++++ E ++ LS+ D LLE I+ G
Sbjct: 138 MTCTSCSSTIERVLQSVNGVQRAHVALAIEEAEIHYDPRLSSYDRLLEEIENAG 191
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +2
Query: 179 MTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSV---KSTLSADDLLEIIKKTGKKTT 349
MTC C+G+VE+ + RL G+ D I + + +++ + + E I+ G + +
Sbjct: 60 MTCSACAGSVEKAIKRL--PGIHDAVIDALNNRAQILFYPNSVDVETIRETIEDAGFEAS 117
Query: 350 YV 355
+
Sbjct: 118 LI 119
>At1g29100.1 68414.m03562 copper-binding family protein similar to
copper homeostasis factor gi:3168840 from Arabidopsis
thaliana; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 141
Score = 37.5 bits (83), Expect = 0.009
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +2
Query: 173 VEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEIIKKTGKK 343
V M C GC V + L ++ GV D+ I + +Q+V+V + +L++ + K+
Sbjct: 3 VPMDCPGCENKVRKALEKM--NGVHDVQIDIKQQRVTVTGSAEQKKVLKVARNVTKR 57
>At3g06130.1 68416.m00704 heavy-metal-associated domain-containing
protein contains Pfam heavy metal associated domain
PF00403
Length = 473
Score = 37.1 bits (82), Expect = 0.012
Identities = 19/68 (27%), Positives = 36/68 (52%)
Frame = +2
Query: 158 THIFNVEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEIIKKTG 337
T + V + C+GC V+++L ++ +GV I + KV+V ++ L++ + K+G
Sbjct: 11 TCVLKVNIHCDGCKQKVKKILQKI--EGVFTTKIDSEQGKVTVSGSVDPSVLIKKLAKSG 68
Query: 338 KKTTYVGA 361
K GA
Sbjct: 69 KHAEIWGA 76
>At2g37390.1 68415.m04585 heavy-metal-associated domain-containing
protein contains Pfam PF00403: Heavy-metal-associated
domain; similar to copper homeostasis factor (CCH)
(ATX1) (GB:U88711) (TIGR_Ath1:At3g56240) [Arabidopsis
thaliana]
Length = 259
Score = 36.3 bits (80), Expect = 0.022
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +2
Query: 164 IFNVEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEIIKK 331
+ V + C GC G V + L R+ QGV +I +KV+V ++ ++L+ I K
Sbjct: 184 VLKVSLHCRGCEGKVRKHLARM--QGVTSFNIDFAAKKVTVTGDITPLEILDSISK 237
>At4g35060.1 68417.m04977 heavy-metal-associated domain-containing
protein / copper chaperone (CCH)-related low similarity
to copper homeostasis factor [GI:3168840][PMID:9701579];
similar to farnesylated proteins GMFP7 [Glycine
max][GI:4097573] and ATFP6 [GI:4097553]; contains
heavy-metal-associated domain PF00403
Length = 153
Score = 35.9 bits (79), Expect = 0.029
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +2
Query: 173 VEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLL-EIIKKTGKK 343
V + CEGC V R L ++ G+ D++I QKV+V + + ++ II +TGK+
Sbjct: 31 VLIDCEGCERKVRRALEGMR--GIRDVTIEPNAQKVTVVGYVEPNKVVARIIHRTGKR 86
>At2g28090.1 68415.m03412 heavy-metal-associated domain-containing
protein similar to farnesylated protein ATFP3
[GI:4097547]; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 245
Score = 35.9 bits (79), Expect = 0.029
Identities = 17/67 (25%), Positives = 35/67 (52%)
Frame = +2
Query: 155 TTHIFNVEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEIIKKT 334
TT + V +C+GC +++ ++ K GV + + ++ V+V T+ + + +K+
Sbjct: 122 TTVVLKVNCSCDGCIKRIQKAVSTTK--GVYQVKMDKEKETVTVMGTMDIKSVTDNLKRK 179
Query: 335 GKKTTYV 355
KKT V
Sbjct: 180 LKKTVQV 186
>At1g22990.1 68414.m02873 heavy-metal-associated domain-containing
protein / copper chaperone (CCH)-related low similarity
to copper homeostasis factor [GI:3168840][PMID:9701579];
strong similarity to farnesylated protein ATFP7
[GI:4097555]; contains heavy-metal-associated domain
PF00403
Length = 152
Score = 35.9 bits (79), Expect = 0.029
Identities = 17/65 (26%), Positives = 36/65 (55%)
Frame = +2
Query: 149 MTTTHIFNVEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEIIK 328
M T +I V++ C+GC ++ ++ +K G + + ++ KV+V + +L+ ++
Sbjct: 28 MQTVNI-KVKIDCDGCERKIKNAVSSIK--GAKSVEVNRKMHKVTVSGYVDPKKVLKTVQ 84
Query: 329 KTGKK 343
TGKK
Sbjct: 85 STGKK 89
>At5g19090.2 68418.m02270 heavy-metal-associated domain-containing
protein contains Pfam heavy-metal-associated domain
PF00403; glycine-rich protein GRP22, rape, PIR:S31415;
isoform contains a non-consensus TG-acceptor splice site
at intron 3
Length = 465
Score = 35.1 bits (77), Expect = 0.050
Identities = 19/68 (27%), Positives = 34/68 (50%)
Frame = +2
Query: 158 THIFNVEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEIIKKTG 337
T + V + C+GC V+++L +++G I L KV+V + L++ + K+G
Sbjct: 11 TCVLKVNIHCDGCKQKVKKILQKIEGVFTTKIDAELG--KVTVSGNVDPSVLIKKLLKSG 68
Query: 338 KKTTYVGA 361
K GA
Sbjct: 69 KHAEIWGA 76
>At5g19090.1 68418.m02269 heavy-metal-associated domain-containing
protein contains Pfam heavy-metal-associated domain
PF00403; glycine-rich protein GRP22, rape, PIR:S31415;
isoform contains a non-consensus TG-acceptor splice site
at intron 3
Length = 587
Score = 35.1 bits (77), Expect = 0.050
Identities = 19/68 (27%), Positives = 34/68 (50%)
Frame = +2
Query: 158 THIFNVEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEIIKKTG 337
T + V + C+GC V+++L +++G I L KV+V + L++ + K+G
Sbjct: 11 TCVLKVNIHCDGCKQKVKKILQKIEGVFTTKIDAELG--KVTVSGNVDPSVLIKKLLKSG 68
Query: 338 KKTTYVGA 361
K GA
Sbjct: 69 KHAEIWGA 76
>At3g05220.1 68416.m00569 heavy-metal-associated domain-containing
protein similar to farnesylated protein 1 (GI:23304411)
{Hordeum vulgare subsp. spontaneum}; contains Pfam
profile PF00403: Heavy-metal-associated domain
Length = 577
Score = 35.1 bits (77), Expect = 0.050
Identities = 17/67 (25%), Positives = 35/67 (52%)
Frame = +2
Query: 158 THIFNVEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEIIKKTG 337
T + V + CEGC V++ L ++ +GV + + + +V+V + L++ + K+G
Sbjct: 11 TCVLKVNVHCEGCKHKVKKQLQKI--EGVYSVKADVEQGRVTVTGNIDPALLVKKLSKSG 68
Query: 338 KKTTYVG 358
K +G
Sbjct: 69 KHAEILG 75
>At2g28660.1 68415.m03484 copper-binding family protein similar to
copper homeostasis factor gi:3168840 from Arabidopsis
thaliana; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 265
Score = 35.1 bits (77), Expect = 0.050
Identities = 17/56 (30%), Positives = 32/56 (57%)
Frame = +2
Query: 164 IFNVEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEIIKK 331
+ V + C+GC G V + ++++ +GV +I L +KV+V ++ L+E I K
Sbjct: 186 VLRVSIHCKGCEGKVRKHISKM--EGVTSYTIDLATKKVTVVGKITPVGLVESISK 239
>At5g02600.2 68418.m00195 heavy-metal-associated domain-containing
protein low similarity to gi:3168840 copper homeostasis
factor; contains Pfam heavy-metal-associated domain
PF00403; predicted proteins, Arabidopsis thaliana
Length = 319
Score = 34.7 bits (76), Expect = 0.066
Identities = 18/56 (32%), Positives = 32/56 (57%)
Frame = +2
Query: 164 IFNVEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEIIKK 331
+ V + C+GC+G V++ L++LK GV +I +KV+V ++ +L I K
Sbjct: 253 VLRVSLHCKGCAGKVKKHLSKLK--GVTSYNIDFAAKKVTVTGDVTPLTVLASISK 306
>At5g02600.1 68418.m00196 heavy-metal-associated domain-containing
protein low similarity to gi:3168840 copper homeostasis
factor; contains Pfam heavy-metal-associated domain
PF00403; predicted proteins, Arabidopsis thaliana
Length = 319
Score = 34.7 bits (76), Expect = 0.066
Identities = 18/56 (32%), Positives = 32/56 (57%)
Frame = +2
Query: 164 IFNVEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEIIKK 331
+ V + C+GC+G V++ L++LK GV +I +KV+V ++ +L I K
Sbjct: 253 VLRVSLHCKGCAGKVKKHLSKLK--GVTSYNIDFAAKKVTVTGDVTPLTVLASISK 306
>At3g02960.1 68416.m00291 copper-binding protein-related low
similarity to copper homeostasis factor gi:3168840 from
Arabidopsis thaliana; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 246
Score = 34.7 bits (76), Expect = 0.066
Identities = 21/60 (35%), Positives = 29/60 (48%)
Frame = +2
Query: 164 IFNVEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEIIKKTGKK 343
+ V M CEGC+ V L GVE I + + KV V DD L+I+++ KK
Sbjct: 39 VLKVYMHCEGCASQVSHCLRGY--DGVEHIKTEIGDNKVVVSGKF--DDPLKILRRVQKK 94
Score = 34.3 bits (75), Expect = 0.088
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +2
Query: 158 THIFNVEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEIIKK 331
T I + M CEGC ++R + ++K G++ + + V V+ + L+E IKK
Sbjct: 127 TAILRMNMHCEGCVHEIKRGIEKIK--GIQSVEPDRSKSTVVVRGVMDPPKLVEKIKK 182
>At4g27590.1 68417.m03963 copper-binding protein-related low
similarity to copper homeostasis factor gi:3168840 from
Arabidopsis thaliana; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 156
Score = 34.3 bits (75), Expect = 0.088
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +2
Query: 140 YSKMTTTHI-FNVEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLL 316
Y+K+ ++ V + GC V+R L+ LKG + + + QKV+V + D+L
Sbjct: 10 YNKVEAQYVEMMVPLYSYGCEKKVKRALSHLKG--IYSVKVDYYNQKVTVWGICNKLDVL 67
Query: 317 EIIKKTGKKTTY 352
++KK K+ +
Sbjct: 68 AMVKKKRKEARF 79
>At5g50740.1 68418.m06287 copper chaperone (CCH)-related low
similarity to copper homeostasis factor
[GI:3168840][PMID: 9701579]; similar to farnesylated
protein ATFP3 [GI:4097547]; contains Pfam profile
PF00403: Heavy-metal-associated domain
Length = 162
Score = 33.9 bits (74), Expect = 0.12
Identities = 18/61 (29%), Positives = 33/61 (54%)
Frame = +2
Query: 164 IFNVEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEIIKKTGKK 343
+ + M CEGC+ + R L +GVED++ KV VK + D L+++++ +K
Sbjct: 30 VLKIFMHCEGCAKKIHRCLKGF--EGVEDVTTDCKTSKVVVKGEKA--DPLKVLQRLQRK 85
Query: 344 T 346
+
Sbjct: 86 S 86
>At3g24450.1 68416.m03068 copper-binding family protein similar to
copper homeostasis factor gi:3168840 from Arabidopsis
thaliana; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 140
Score = 33.9 bits (74), Expect = 0.12
Identities = 20/53 (37%), Positives = 29/53 (54%)
Frame = +2
Query: 173 VEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEIIKK 331
V M C GC+ VE+ +++L GV + L +KV VK + D+LE I K
Sbjct: 80 VSMHCYGCAKKVEKHISKL--DGVTWYKVELESKKVVVKGNILPVDVLESICK 130
>At4g38580.1 68417.m05461 heavy-metal-associated domain-containing
protein / copper chaperone (CCH)-related low similarity
to copper homeostasis factor [PMID:9701579][GI:3168840];
nearly identical to farnesylated protein TFP6
[GI:4097553]; contains Heavy-metal-associated domain
PF00403
Length = 153
Score = 32.3 bits (70), Expect = 0.35
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +2
Query: 146 KMTTTHIFNVEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLL-EI 322
K T V+M CEGC V R + +K GV +++ KV+V + + ++ +
Sbjct: 23 KQLQTVEIKVKMDCEGCERKVRRSVEGMK--GVSSVTLEPKAHKVTVVGYVDPNKVVARM 80
Query: 323 IKKTGKK 343
+TGKK
Sbjct: 81 SHRTGKK 87
>At5g26690.1 68418.m03170 heavy-metal-associated domain-containing
protein low similarity to farnesylated protein GMFP5
[Glycine max][GI:4097571]; contains Pfam profile
PF00403: Heavy-metal-associated domain
Length = 114
Score = 31.9 bits (69), Expect = 0.47
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +2
Query: 149 MTTTHI-FNVEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEII 325
MTT I V++ CE C A+ + L +GV +S+ + ++V T+ + E +
Sbjct: 1 MTTKKIEIKVDIDCEKCKHAIMEAVTEL--EGVNIVSLDQEKSILTVVGTMDPVCVAEQL 58
Query: 326 KKTGKKTTYV 355
KK KK +
Sbjct: 59 KKINKKPVVI 68
>At5g16640.1 68418.m01948 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 504
Score = 31.9 bits (69), Expect = 0.47
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = +1
Query: 592 YHKL*LISIPYILCTLLIVVKCLLYSTLIGIDVAALGKWYKLG 720
+ ++ ++ IP+ LCT I++ C + + + ++ LGK KLG
Sbjct: 104 WEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLG 146
>At3g53530.1 68416.m05911 heavy-metal-associated domain-containing
protein low similarity to gi:3168840 copper homeostasis
factor; contains Pfam heavy-metal-associated domain
PF00403
Length = 247
Score = 31.9 bits (69), Expect = 0.47
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +2
Query: 185 CEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEIIKK 331
C GC G V++ L+++ QGV +I +KV+V ++ ++L + K
Sbjct: 180 CRGCQGKVKKHLSKM--QGVTSFNIDFASKKVTVTGDITPLEVLGCLSK 226
>At5g66110.1 68418.m08328 heavy-metal-associated domain-containing
protein similar to farnesylated protein TFP6
[GI:4097553]; contains Heavy-metal-associated domain
PF00403
Length = 121
Score = 31.1 bits (67), Expect = 0.82
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +2
Query: 179 MTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLL-EIIKKTGKK 343
M CEGC V + + +K GV +++ + K++V+ + ++ ++ +TGKK
Sbjct: 1 MDCEGCERRVRKSVEGMK--GVSKVTVDPKQSKLTVEGFVQPSKVVHRVMHRTGKK 54
>At3g11960.2 68416.m01476 cleavage and polyadenylation specificity
factor (CPSF) A subunit C-terminal domain-containing
protein similar to Splicing factor 3B subunit 3
(Spliceosome associatedprotein 130) (SAP 130) (SF3b130)
(Pre-mRNA splicing factor SF3b 130kDa subunit)
(SP:Q15393) [Homo sapiens]; contains Pfam PF03178 : CPSF
A subunit region
Length = 1329
Score = 31.1 bits (67), Expect = 0.82
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Frame = +2
Query: 80 LIECSSKPSYSLFHIVYVYSYSKMTTTHIFN----VEMTCEGCSGAVERVLNRLKGQGVE 247
L +C +PS L + Y Y S + +F +E+ G G VE V + ++
Sbjct: 37 LAKCILRPSVVL-QVAYGYFRSPSSRDIVFGKETCIELVVIGEDGIVESVCEQYVFGTIK 95
Query: 248 DISISLPEQKVSVKSTLSADDLLEIIKKTGK 340
D+++ K+ S DLL ++ +GK
Sbjct: 96 DLAVIPQSSKLYSNSLQMGKDLLAVLSDSGK 126
>At3g11960.1 68416.m01475 cleavage and polyadenylation specificity
factor (CPSF) A subunit C-terminal domain-containing
protein similar to Splicing factor 3B subunit 3
(Spliceosome associatedprotein 130) (SAP 130) (SF3b130)
(Pre-mRNA splicing factor SF3b 130kDa subunit)
(SP:Q15393) [Homo sapiens]; contains Pfam PF03178 : CPSF
A subunit region
Length = 1379
Score = 31.1 bits (67), Expect = 0.82
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Frame = +2
Query: 80 LIECSSKPSYSLFHIVYVYSYSKMTTTHIFN----VEMTCEGCSGAVERVLNRLKGQGVE 247
L +C +PS L + Y Y S + +F +E+ G G VE V + ++
Sbjct: 37 LAKCILRPSVVL-QVAYGYFRSPSSRDIVFGKETCIELVVIGEDGIVESVCEQYVFGTIK 95
Query: 248 DISISLPEQKVSVKSTLSADDLLEIIKKTGK 340
D+++ K+ S DLL ++ +GK
Sbjct: 96 DLAVIPQSSKLYSNSLQMGKDLLAVLSDSGK 126
>At1g64580.1 68414.m07320 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 1052
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 592 YHKL*LISIPYILCTLLIVVKCLLYSTLIGIDVAALGKWYKLG 720
YHK+ + I + L + I++ C + + + +A LGK KLG
Sbjct: 631 YHKMENLGISHDLYSFTILIHCFCRCSRLSLALALLGKMMKLG 673
>At1g63080.1 68414.m07126 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 614
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 598 KL*LISIPYILCTLLIVVKCLLYSTLIGIDVAALGKWYKLG 720
K+ ++ + + L T I++ CL + + +A LGK KLG
Sbjct: 90 KMEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLG 130
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,550,311
Number of Sequences: 28952
Number of extensions: 314740
Number of successful extensions: 698
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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