Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0644
         (518 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   2.8  
DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory pro...    21   5.0  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   6.5  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    21   8.7  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -1

Query: 212 PXSDGFVCDTLAASGYFSCFVAFSQAYCDF 123
           P  +G VC T+ A    +C   F    C+F
Sbjct: 346 PCQNGGVCTTIHAGHKCTCPEGFYGKNCEF 375


>DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory
           protein 1 protein.
          Length = 112

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 229 VFKRNTPSLSVIYYAKLSDTLNMRRGLWSYLRC 327
           +F    P L+ I    +  TLN RR L   L+C
Sbjct: 19  IFTCVKPQLTRISDEAIESTLNDRRYLLRQLKC 51


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -1

Query: 476 IYHLMVMVMSLGGCLPHMSEHVDK 405
           +YH+  M  S  GC   ++E   K
Sbjct: 342 LYHISFMACSSAGCSQKVAEERHK 365


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +3

Query: 102 NHGLLVFEIAVGLRK 146
           NHG+L+   ++G +K
Sbjct: 194 NHGILIVVYSIGAKK 208


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,074
Number of Sequences: 336
Number of extensions: 1359
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12468463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)