Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0644
         (518 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein L36|Schizosacc...    82   4e-17
SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein L36|Sch...    82   6e-17
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   1.7  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    27   2.2  
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ...    26   3.9  
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    25   5.1  
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    25   6.8  
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    25   6.8  
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    25   6.8  
SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc...    25   9.0  
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    25   9.0  
SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos...    25   9.0  

>SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 99

 Score = 82.2 bits (194), Expect = 4e-17
 Identities = 41/80 (51%), Positives = 56/80 (70%)
 Frame = +3

Query: 180 KGITDKAIRXRPARLKGLQTKHSKFVRDLLREVVGHAQYEKRAMELLKVSKDKRALKFLK 359
           K +T + +  RP+R KG  +K + FVR ++REV G A YE+R MEL++ S+DKRA K  K
Sbjct: 13  KVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAK 72

Query: 360 RRLGTHIRAKRKREELINVL 419
           +RLGT  RAK K EEL +V+
Sbjct: 73  KRLGTLKRAKGKIEELTSVI 92


>SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 99

 Score = 81.8 bits (193), Expect = 6e-17
 Identities = 41/80 (51%), Positives = 56/80 (70%)
 Frame = +3

Query: 180 KGITDKAIRXRPARLKGLQTKHSKFVRDLLREVVGHAQYEKRAMELLKVSKDKRALKFLK 359
           K +T + +  RP+R KG  +K + FVR ++REV G A YE+R MEL++ S+DKRA K  K
Sbjct: 13  KTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAK 72

Query: 360 RRLGTHIRAKRKREELINVL 419
           +RLGT  RAK K EEL +V+
Sbjct: 73  KRLGTLKRAKGKIEELTSVI 92


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = -1

Query: 479 FIYHLMVMVMSLGGCLPHMSEHVDKFFTLPLGA-DVCAQSSLQELQSTLVF*HLK*LHSP 303
           ++   M +   +GG +   SEHV+K F L      V  ++   ++ S  +   LK + S 
Sbjct: 116 YLSKYMELSKKIGGLIAEQSEHVEKAFNLLRQVLSVALKAQKPDMDSPELLEFLKPIQSE 175

Query: 302 LLILS 288
           LL ++
Sbjct: 176 LLTIT 180


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 990

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/36 (38%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
 Frame = +2

Query: 269  TRSCRTRSI*EEGY---GVT*GVKRQACSEVLEATI 367
            TR+C T+S+ EEG+    V+  +KR+  +++L+A I
Sbjct: 929  TRACLTQSLEEEGFPSRNVSNEIKRRFLTDLLKARI 964


>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 394 SVKNLSTCSLI*GRQPPRLITITI 465
           SVKNL   SL     PPRLIT+ +
Sbjct: 421 SVKNLKLLSLKYDVTPPRLITVCV 444


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = +3

Query: 264 LLREVVGHAQYEKRAMELLKVSKDKRALKFLKRRL----GTHIRAKRK 395
           ++RE +G   + K  +     ++ K ALKF+ R+L      H+R +R+
Sbjct: 35  IIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVERE 82


>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = -2

Query: 337 LSFDTLSNSIALFSY*ACPTTS 272
           +S+D+LS+ +++ S+  CP T+
Sbjct: 79  MSYDSLSDDVSVLSFLDCPLTT 100


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 188 DTLAASGYFSCFVAFSQAYCDFKDEEAMIY 99
           D+L  S ++  F A    Y DF+D +  +Y
Sbjct: 526 DSLIRSSFYDYFKAIYTTYTDFEDLDHRLY 555


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 4/30 (13%)
 Frame = +1

Query: 241 NTPSLSV--IYY--AKLSDTLNMRRGLWSY 318
           N P+L++  +Y+  A  +DTL + RGLW Y
Sbjct: 81  NLPTLTLKPLYWPSASKNDTLRVVRGLWMY 110


>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
           scaffold protein Isu1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 192

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 210 RPARLKGLQTKHSKFVRDLLREVVGHAQYEKRAME 314
           RPA L+ L+T  SKFV  +    V    Y K  ++
Sbjct: 27  RPANLQFLKTNSSKFVPQVTAN-VSRRMYHKNVLD 60


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -1

Query: 458 MVMSLGGCLPHMSEHVDKFFTLPLGADVCAQSSLQELQSTLV 333
           +V SL G    + +   +FFT PL ++VCA + +   +  ++
Sbjct: 544 IVKSLNGEYIALEKIEAQFFTSPLVSNVCAYADVNHAKPVVI 585


>SPAC631.01c |acp2||F-actin capping protein beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 268

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = +1

Query: 151 TKQLKYPLAARVSQTKPSXLGQLD*RVFKRNTPSLSVIYYAKLSDTLNMRRGL 309
           T+Q    L A    T+ + +G+L   +  R    L  +Y+ K  D +N  R +
Sbjct: 194 TRQTSQRLPAADDDTEIANVGKLVEEMETRMRNFLQDVYFGKTKDIINQTRSI 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,488,658
Number of Sequences: 5004
Number of extensions: 25474
Number of successful extensions: 73
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)