Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0644
         (518 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1294 - 36076524-36076554,36076821-36076891,36077221-360772...    97   7e-21
05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018     97   1e-20
07_03_0078 - 13147741-13148913                                         29   2.2  
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277...    27   6.8  
09_01_0024 + 438288-438542,439020-439069,440096-440351                 27   9.0  
03_01_0192 - 1534013-1535147,1535249-1535370,1535497-1535556,153...    27   9.0  

>01_06_1294 -
           36076524-36076554,36076821-36076891,36077221-36077275,
           36077363-36077562,36078614-36078715
          Length = 152

 Score = 97.1 bits (231), Expect = 7e-21
 Identities = 53/96 (55%), Positives = 62/96 (64%)
 Frame = +3

Query: 132 VGLRKGHKTTKISAGRKGITDKAIRXRPARLKGLQTKHSKFVRDLLREVVGHAQYEKRAM 311
           VG+ KGH  TK          + +  RP+  KG  TK   FVR L+REVVG A YEKR  
Sbjct: 12  VGINKGHVVTK----------RELPPRPSDRKGKSTKRVNFVRGLIREVVGFAPYEKRIT 61

Query: 312 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELINVL 419
           ELLKV KDKRALK  KR+LGTH RAK+KREE+  V+
Sbjct: 62  ELLKVGKDKRALKVAKRKLGTHKRAKKKREEMAGVI 97


>05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018
          Length = 113

 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 53/96 (55%), Positives = 62/96 (64%)
 Frame = +3

Query: 132 VGLRKGHKTTKISAGRKGITDKAIRXRPARLKGLQTKHSKFVRDLLREVVGHAQYEKRAM 311
           VG+ KGH  TK          + +  RP+  KG  TK   FVR+L+REV G A YEKR  
Sbjct: 12  VGINKGHVVTK----------RELPPRPSDRKGKSTKRVTFVRNLIREVAGFAPYEKRIT 61

Query: 312 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELINVL 419
           ELLKV KDKRALK  KR+LGTH RAK+KREE+  VL
Sbjct: 62  ELLKVGKDKRALKVAKRKLGTHKRAKKKREEMAGVL 97


>07_03_0078 - 13147741-13148913
          Length = 390

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2

Query: 217 AGLXLMALSVIPLRPADILVVLWPF 143
           AGL   AL VIP  P  + +V WPF
Sbjct: 71  AGLLYFALVVIPALPGVLRLVAWPF 95


>04_04_1144 +
           31222556-31222633,31223238-31227665,31227724-31227789,
           31227790-31228014,31228097-31228255,31228393-31228551,
           31228855-31229013,31229371-31229490,31229604-31229825
          Length = 1871

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/72 (20%), Positives = 39/72 (54%)
 Frame = +3

Query: 195 KAIRXRPARLKGLQTKHSKFVRDLLREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGT 374
           +A + + A L+ +    S+  ++L+ E +G    EK+ +ELL +  +++  ++LK +   
Sbjct: 639 EAYQTKAASLEAVMESASEKEKELV-ESLGQITEEKKKLELLVLEYEEKTEEYLKEKQSL 697

Query: 375 HIRAKRKREELI 410
             R + +  +++
Sbjct: 698 EERLQSQESKVL 709


>09_01_0024 + 438288-438542,439020-439069,440096-440351
          Length = 186

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +3

Query: 288 AQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELIN 413
           A++E R  E LK ++++ A K LKR+     + ++KR +  N
Sbjct: 122 AEFELRREERLKEAEERTAKKRLKRQKKKQRKKEKKRSKTNN 163


>03_01_0192 -
           1534013-1535147,1535249-1535370,1535497-1535556,
           1535666-1535764,1535839-1535889,1535974-1536175,
           1536709-1536911,1537264-1537350,1537435-1537589,
           1537640-1537723,1538121-1538325,1538497-1538724
          Length = 876

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 22/76 (28%), Positives = 45/76 (59%)
 Frame = +3

Query: 192 DKAIRXRPARLKGLQTKHSKFVRDLLREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLG 371
           D+ I+ + + +  L+ + S+  RDL RE    A  + ++  L KV+ +  A + +KR+  
Sbjct: 316 DEIIQSQKSNICELEAQLSE-ERDLRREERDKAAEDLKSA-LHKVNAE--AQEEIKRQAE 371

Query: 372 THIRAKRKREELINVL 419
            H+R +R+++E+I+ L
Sbjct: 372 AHLRQQREQKEVISKL 387


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,927,415
Number of Sequences: 37544
Number of extensions: 173648
Number of successful extensions: 416
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)