BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0644 (518 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_06_1294 - 36076524-36076554,36076821-36076891,36077221-360772... 97 7e-21 05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018 97 1e-20 07_03_0078 - 13147741-13148913 29 2.2 04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 27 6.8 09_01_0024 + 438288-438542,439020-439069,440096-440351 27 9.0 03_01_0192 - 1534013-1535147,1535249-1535370,1535497-1535556,153... 27 9.0 >01_06_1294 - 36076524-36076554,36076821-36076891,36077221-36077275, 36077363-36077562,36078614-36078715 Length = 152 Score = 97.1 bits (231), Expect = 7e-21 Identities = 53/96 (55%), Positives = 62/96 (64%) Frame = +3 Query: 132 VGLRKGHKTTKISAGRKGITDKAIRXRPARLKGLQTKHSKFVRDLLREVVGHAQYEKRAM 311 VG+ KGH TK + + RP+ KG TK FVR L+REVVG A YEKR Sbjct: 12 VGINKGHVVTK----------RELPPRPSDRKGKSTKRVNFVRGLIREVVGFAPYEKRIT 61 Query: 312 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELINVL 419 ELLKV KDKRALK KR+LGTH RAK+KREE+ V+ Sbjct: 62 ELLKVGKDKRALKVAKRKLGTHKRAKKKREEMAGVI 97 >05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018 Length = 113 Score = 96.7 bits (230), Expect = 1e-20 Identities = 53/96 (55%), Positives = 62/96 (64%) Frame = +3 Query: 132 VGLRKGHKTTKISAGRKGITDKAIRXRPARLKGLQTKHSKFVRDLLREVVGHAQYEKRAM 311 VG+ KGH TK + + RP+ KG TK FVR+L+REV G A YEKR Sbjct: 12 VGINKGHVVTK----------RELPPRPSDRKGKSTKRVTFVRNLIREVAGFAPYEKRIT 61 Query: 312 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELINVL 419 ELLKV KDKRALK KR+LGTH RAK+KREE+ VL Sbjct: 62 ELLKVGKDKRALKVAKRKLGTHKRAKKKREEMAGVL 97 >07_03_0078 - 13147741-13148913 Length = 390 Score = 29.1 bits (62), Expect = 2.2 Identities = 13/25 (52%), Positives = 15/25 (60%) Frame = -2 Query: 217 AGLXLMALSVIPLRPADILVVLWPF 143 AGL AL VIP P + +V WPF Sbjct: 71 AGLLYFALVVIPALPGVLRLVAWPF 95 >04_04_1144 + 31222556-31222633,31223238-31227665,31227724-31227789, 31227790-31228014,31228097-31228255,31228393-31228551, 31228855-31229013,31229371-31229490,31229604-31229825 Length = 1871 Score = 27.5 bits (58), Expect = 6.8 Identities = 15/72 (20%), Positives = 39/72 (54%) Frame = +3 Query: 195 KAIRXRPARLKGLQTKHSKFVRDLLREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGT 374 +A + + A L+ + S+ ++L+ E +G EK+ +ELL + +++ ++LK + Sbjct: 639 EAYQTKAASLEAVMESASEKEKELV-ESLGQITEEKKKLELLVLEYEEKTEEYLKEKQSL 697 Query: 375 HIRAKRKREELI 410 R + + +++ Sbjct: 698 EERLQSQESKVL 709 >09_01_0024 + 438288-438542,439020-439069,440096-440351 Length = 186 Score = 27.1 bits (57), Expect = 9.0 Identities = 14/42 (33%), Positives = 25/42 (59%) Frame = +3 Query: 288 AQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELIN 413 A++E R E LK ++++ A K LKR+ + ++KR + N Sbjct: 122 AEFELRREERLKEAEERTAKKRLKRQKKKQRKKEKKRSKTNN 163 >03_01_0192 - 1534013-1535147,1535249-1535370,1535497-1535556, 1535666-1535764,1535839-1535889,1535974-1536175, 1536709-1536911,1537264-1537350,1537435-1537589, 1537640-1537723,1538121-1538325,1538497-1538724 Length = 876 Score = 27.1 bits (57), Expect = 9.0 Identities = 22/76 (28%), Positives = 45/76 (59%) Frame = +3 Query: 192 DKAIRXRPARLKGLQTKHSKFVRDLLREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLG 371 D+ I+ + + + L+ + S+ RDL RE A + ++ L KV+ + A + +KR+ Sbjct: 316 DEIIQSQKSNICELEAQLSE-ERDLRREERDKAAEDLKSA-LHKVNAE--AQEEIKRQAE 371 Query: 372 THIRAKRKREELINVL 419 H+R +R+++E+I+ L Sbjct: 372 AHLRQQREQKEVISKL 387 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,927,415 Number of Sequences: 37544 Number of extensions: 173648 Number of successful extensions: 416 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 412 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 415 length of database: 14,793,348 effective HSP length: 77 effective length of database: 11,902,460 effective search space used: 1130733700 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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