Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0644
(518 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35451| Best HMM Match : Ribosomal_L36e (HMM E-Value=0) 113 8e-26
SB_6230| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.75
SB_19393| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_45611| Best HMM Match : p450 (HMM E-Value=0) 27 7.0
SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0) 27 7.0
SB_14664| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0
SB_27155| Best HMM Match : Dynein_heavy (HMM E-Value=1.1e-09) 27 9.3
SB_26477| Best HMM Match : GST_C (HMM E-Value=0.97) 27 9.3
>SB_35451| Best HMM Match : Ribosomal_L36e (HMM E-Value=0)
Length = 100
Score = 113 bits (272), Expect = 8e-26
Identities = 57/98 (58%), Positives = 70/98 (71%)
Frame = +3
Query: 126 IAVGLRKGHKTTKISAGRKGITDKAIRXRPARLKGLQTKHSKFVRDLLREVVGHAQYEKR 305
+AVGL+KGHK TK + +P+R KG K KFVRD++REVVG A YEKR
Sbjct: 1 MAVGLQKGHKVTK----------NVTKPKPSRRKGASNKRVKFVRDVVREVVGFAPYEKR 50
Query: 306 AMELLKVSKDKRALKFLKRRLGTHIRAKRKREELINVL 419
MELL++ KDKRALKF K+RLGTH+R KRKREE+ +VL
Sbjct: 51 VMELLRIGKDKRALKFCKKRLGTHVRGKRKREEITSVL 88
>SB_6230| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 191
Score = 30.7 bits (66), Expect = 0.75
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 225 KGLQTKHSKFVRDLLREVVGHAQYEKRAMELLKVSKDK 338
+GL+ K + +L E GHA Y+K L KVS+++
Sbjct: 32 RGLRKVSRKHAQRILDETAGHASYKKEHRGLRKVSREQ 69
Score = 30.7 bits (66), Expect = 0.75
Identities = 21/61 (34%), Positives = 29/61 (47%)
Frame = +3
Query: 225 KGLQTKHSKFVRDLLREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREE 404
+GL+ K R +L E GH Y+K L KVS+ K A + L G H K++
Sbjct: 88 RGLRKVSRKHARRILDETAGHNTYKKEHRGLRKVSR-KHAQRILDGTAG-HCSYKKEHRG 145
Query: 405 L 407
L
Sbjct: 146 L 146
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +3
Query: 225 KGLQTKHSKFVRDLLREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKR 398
+GL+ + + ++ E GH Y+K L KVS+ K A + L G + K R
Sbjct: 60 RGLRKVSREQAQRIIDETAGHGSYKKEYRGLRKVSR-KHARRILDETAGHNTYKKEHR 116
Score = 27.9 bits (59), Expect = 5.3
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +3
Query: 264 LLREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELINV 416
+L E GH Y+K L KVS+ K A + L G H K++ L V
Sbjct: 17 ILNETAGHGSYKKEHRGLRKVSR-KHAQRILDETAG-HASYKKEHRGLRKV 65
>SB_19393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1660
Score = 28.3 bits (60), Expect = 4.0
Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 12/103 (11%)
Frame = +3
Query: 132 VGLRKGHKTT-----KISAGRKGITDKAIRXRPARLKGLQ----TKHS---KFVRDLLRE 275
V RKGHK T + G+KGI K R +R Q KHS K +R +RE
Sbjct: 1109 VSTRKGHKRTENYNDRKRDGKKGIDGKRERLSSSRSDDFQQSKMIKHSHLEKSLRQAMRE 1168
Query: 276 VVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREE 404
+ H+ E KV K K+ ++F K + G ++ + E+
Sbjct: 1169 -LEHSSENSSEEEKRKVRK-KKLVEF-KNKHGLDVKKMDESEK 1208
>SB_45611| Best HMM Match : p450 (HMM E-Value=0)
Length = 847
Score = 27.5 bits (58), Expect = 7.0
Identities = 16/29 (55%), Positives = 18/29 (62%)
Frame = +3
Query: 327 SKDKRALKFLKRRLGTHIRAKRKREELIN 413
+K RALKFLK RL +R KR E L N
Sbjct: 59 NKSPRALKFLKTRL-QDLRKKRDSETLRN 86
>SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 2682
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -2
Query: 226 FSLAGLXLMALSVIPLRPADILVVLWPFRRPTAISKTRR 110
FS A + L+V+ + + I+V LW +RP A S +++
Sbjct: 211 FSFAFFYAIPLAVVIVLYSAIMVTLWMHKRPGAFSSSQQ 249
>SB_14664| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 61
Score = 27.5 bits (58), Expect = 7.0
Identities = 12/45 (26%), Positives = 27/45 (60%)
Frame = +3
Query: 270 REVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREE 404
RE+ + + + E++K+ K K++ K +K++ + K+K+EE
Sbjct: 3 REINQKDKKQIKKEEIIKIKKKKKSKKKIKKKKKKKKKKKKKKEE 47
>SB_27155| Best HMM Match : Dynein_heavy (HMM E-Value=1.1e-09)
Length = 1248
Score = 27.1 bits (57), Expect = 9.3
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +3
Query: 210 RPARLKGLQTKHSKFVRDLLREVVGHAQYEKRAMELLKVSKDKR 341
RP +L+ ++ + +VR L + G +Y + L++ SKD R
Sbjct: 625 RPNKLQVIKLSDANYVRTLENSIQGGIEYLRLGDHLVEFSKDFR 668
>SB_26477| Best HMM Match : GST_C (HMM E-Value=0.97)
Length = 971
Score = 27.1 bits (57), Expect = 9.3
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -3
Query: 369 PIVASRTSEHACLLTP*VTP*PSSHIERVRQLRVINHGQTW 247
P +S A L+ P PS ++ R+ R NHG+TW
Sbjct: 772 PTERDYSSALAALMRKAKQPKPSPNLVHTRRERPRNHGRTW 812
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,560,736
Number of Sequences: 59808
Number of extensions: 202128
Number of successful extensions: 587
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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