Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0644
         (518 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-6|AAC48295.2|  104|Caenorhabditis elegans Ribosomal prote...   103   1e-22
Z81589-9|CAJ85769.1|  926|Caenorhabditis elegans Hypothetical pr...    31   0.65 
Z81589-8|CAB04720.1|  923|Caenorhabditis elegans Hypothetical pr...    31   0.65 
Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical pr...    31   0.65 
Z75952-5|CAB00093.2|  149|Caenorhabditis elegans Hypothetical pr...    31   0.65 
AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical...    29   2.0  
Z70680-8|CAA94570.2|  349|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AC006651-7|AAX22287.1|  786|Caenorhabditis elegans Hypothetical ...    28   3.5  
AC006651-6|AAF39868.1|  833|Caenorhabditis elegans Hypothetical ...    28   3.5  
Z81066-5|CAB02969.1|  777|Caenorhabditis elegans Hypothetical pr...    27   8.0  
U40415-10|AAK39254.1|  215|Caenorhabditis elegans Dnaj domain (p...    27   8.0  
AC025727-1|AAG23391.3|  429|Caenorhabditis elegans Hypothetical ...    27   8.0  
AC006834-4|AAF40012.1|  392|Caenorhabditis elegans Hypothetical ...    27   8.0  

>U00033-6|AAC48295.2|  104|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 36 protein.
          Length = 104

 Score =  103 bits (246), Expect = 1e-22
 Identities = 52/98 (53%), Positives = 70/98 (71%)
 Frame = +3

Query: 126 IAVGLRKGHKTTKISAGRKGITDKAIRXRPARLKGLQTKHSKFVRDLLREVVGHAQYEKR 305
           +AVGL KGH  T++           ++ R  R KG+ +K +K VR+L+RE+ G A YE+R
Sbjct: 9   LAVGLNKGHAATQLP----------VKQRQNRHKGVASKKTKIVRELVREITGFAPYERR 58

Query: 306 AMELLKVSKDKRALKFLKRRLGTHIRAKRKREELINVL 419
            +E+L++SKDKRALKFLKRR+GTH RAK KREEL NV+
Sbjct: 59  VLEMLRISKDKRALKFLKRRIGTHRRAKGKREELQNVI 96


>Z81589-9|CAJ85769.1|  926|Caenorhabditis elegans Hypothetical
           protein T08G5.5b protein.
          Length = 926

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 16/46 (34%), Positives = 28/46 (60%)
 Frame = +3

Query: 210 RPARLKGLQTKHSKFVRDLLREVVGHAQYEKRAMELLKVSKDKRAL 347
           R   LK L+  HS   + +L ++  HA YE+RA+ L ++ + ++AL
Sbjct: 679 RKRLLKFLEVSHSYSPQTVLLQLAPHAFYEERALILGRLKQHEQAL 724


>Z81589-8|CAB04720.1|  923|Caenorhabditis elegans Hypothetical
           protein T08G5.5a protein.
          Length = 923

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 16/46 (34%), Positives = 28/46 (60%)
 Frame = +3

Query: 210 RPARLKGLQTKHSKFVRDLLREVVGHAQYEKRAMELLKVSKDKRAL 347
           R   LK L+  HS   + +L ++  HA YE+RA+ L ++ + ++AL
Sbjct: 676 RKRLLKFLEVSHSYSPQTVLLQLAPHAFYEERALILGRLKQHEQAL 721


>Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical
           protein R13H4.8 protein.
          Length = 212

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -3

Query: 57  CCCXXXCXCXCXCC 16
           CCC   C C C CC
Sbjct: 119 CCCGCGCGCGCGCC 132


>Z75952-5|CAB00093.2|  149|Caenorhabditis elegans Hypothetical
           protein F29D10.2 protein.
          Length = 149

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -3

Query: 57  CCCXXXCXCXCXCC 16
           CCC   C C C CC
Sbjct: 101 CCCGCGCGCGCGCC 114


>AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical
           protein Y47D3A.26 protein.
          Length = 1205

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 210 RPARLKGLQTKHSKFVRDLLREVVGHAQYEKRAMELLKVSKDKR 341
           +  ++  L T    +   LLREV G   Y++R  E LK+ K+ +
Sbjct: 141 KQGKINELATSPDAYKLKLLREVAGTRVYDERKEESLKILKETK 184


>Z70680-8|CAA94570.2|  349|Caenorhabditis elegans Hypothetical
           protein C25G4.7 protein.
          Length = 349

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +3

Query: 255 VRDLLREVVGHAQYEKRAMELLKV 326
           +RD L EV+G+ Q++K  +E+L V
Sbjct: 133 IRDFLCEVIGNRQFKKYKLEILTV 156


>AC006651-7|AAX22287.1|  786|Caenorhabditis elegans Hypothetical
           protein H06I04.3c protein.
          Length = 786

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/40 (30%), Positives = 26/40 (65%)
 Frame = +3

Query: 222 LKGLQTKHSKFVRDLLREVVGHAQYEKRAMELLKVSKDKR 341
           L+  Q +HS+ VR++ +      + EK+ +EL++++K K+
Sbjct: 732 LENDQMEHSEKVREMKKVYANATRKEKKKVELVRMTKGKK 771


>AC006651-6|AAF39868.1|  833|Caenorhabditis elegans Hypothetical
           protein H06I04.3a protein.
          Length = 833

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/40 (30%), Positives = 26/40 (65%)
 Frame = +3

Query: 222 LKGLQTKHSKFVRDLLREVVGHAQYEKRAMELLKVSKDKR 341
           L+  Q +HS+ VR++ +      + EK+ +EL++++K K+
Sbjct: 732 LENDQMEHSEKVREMKKVYANATRKEKKKVELVRMTKGKK 771


>Z81066-5|CAB02969.1|  777|Caenorhabditis elegans Hypothetical
           protein F17B5.1a protein.
          Length = 777

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = +3

Query: 216 ARLKGLQTKHSKFVRDLLREVVGHAQYEKRAMELLKVSKDKRALKFL--KRRLGTHIRAK 389
           AR+K  + K  K + +  R+     +   +A E LK+ ++++  K L  +R+    +  K
Sbjct: 535 ARIKEEEEKQRKILEEEARKKQEEEEARLKAEEELKIYEEEKRKKELEEERKKKEELEIK 594

Query: 390 RKREE 404
           RK EE
Sbjct: 595 RKAEE 599


>U40415-10|AAK39254.1|  215|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 14 protein.
          Length = 215

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -3

Query: 54  CCXXXCXCXCXCC 16
           CC   C C C CC
Sbjct: 145 CCCCGCMCCCQCC 157



 Score = 27.1 bits (57), Expect = 8.0
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -3

Query: 57  CCCXXXCXCXCXC 19
           CCC   C C C C
Sbjct: 146 CCCGCMCCCQCCC 158


>AC025727-1|AAG23391.3|  429|Caenorhabditis elegans Hypothetical
           protein Y73E7A.3 protein.
          Length = 429

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -3

Query: 57  CCCXXXCXCXCXCCY 13
           C C   C C C CC+
Sbjct: 370 CPCLFVCCCCCGCCF 384


>AC006834-4|AAF40012.1|  392|Caenorhabditis elegans Hypothetical
           protein ZK973.8 protein.
          Length = 392

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 228 GLQTKHSKFVRDLLREVVGHAQYEKRAMELLKV 326
           G  T  S  VRD L  V+G+ +YE    E+L V
Sbjct: 126 GYSTPASGAVRDFLVGVIGNRRYENCMFEILTV 158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,288,749
Number of Sequences: 27780
Number of extensions: 144819
Number of successful extensions: 492
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)