Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0644
         (518 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    27   0.088
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    27   0.088
U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    22   3.3  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   7.6  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   7.6  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   7.6  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   7.6  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   7.6  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   7.6  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   7.6  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   7.6  

>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 27.5 bits (58), Expect = 0.088
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +3

Query: 228 GLQTKHSKFVRDLLREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTH-IRAKR 392
           GLQ K      D L   +    YEKR+ +   V     + K  + R+G H +R KR
Sbjct: 213 GLQRKKDTTFDDYLDYAINPFDYEKRSTDFQDVESGSESFK--RARMGFHGMRGKR 266


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 27.5 bits (58), Expect = 0.088
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +3

Query: 228 GLQTKHSKFVRDLLREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTH-IRAKR 392
           GLQ K      D L   +    YEKR+ +   V     + K  + R+G H +R KR
Sbjct: 213 GLQRKKDTTFDDYLDYAINPFDYEKRSTDFQDVESGSESFK--RARMGFHGMRGKR 266


>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.
          Length = 53

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 137 PAKRPQNN*NIRWPQGY 187
           P + P N   I+WPQGY
Sbjct: 38  PGQGPFNP-KIKWPQGY 53


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 354 LKRRLGTHIRAKRKREELINVL 419
           LKRR G   +   +REE+ N+L
Sbjct: 159 LKRRTGEGSKPIFEREEIKNIL 180


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 354 LKRRLGTHIRAKRKREELINVL 419
           LKRR G   +   +REE+ N+L
Sbjct: 159 LKRRTGEGSKPIFEREEIKNIL 180


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 354 LKRRLGTHIRAKRKREELINVL 419
           LKRR G   +   +REE+ N+L
Sbjct: 159 LKRRTGEGSKPIFEREEIKNIL 180


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 354 LKRRLGTHIRAKRKREELINVL 419
           LKRR G   +   +REE+ N+L
Sbjct: 159 LKRRTGEGSKPIFEREEIKNIL 180


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 354 LKRRLGTHIRAKRKREELINVL 419
           LKRR G   +   +REE+ N+L
Sbjct: 159 LKRRTGEGSKPIFEREEIKNIL 180


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 354 LKRRLGTHIRAKRKREELINVL 419
           LKRR G   +   +REE+ N+L
Sbjct: 159 LKRRTGEGSKPIFEREEIKNIL 180


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 354 LKRRLGTHIRAKRKREELINVL 419
           LKRR G   +   +REE+ N+L
Sbjct: 159 LKRRTGEGSKPIFEREEIKNIL 180


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 354 LKRRLGTHIRAKRKREELINVL 419
           LKRR G   +   +REE+ N+L
Sbjct: 159 LKRRTGEGSKPIFEREEIKNIL 180


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,166
Number of Sequences: 438
Number of extensions: 1710
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)