Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0644
         (518 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S ...    95   3e-20
At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A)            94   6e-20
At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S ...    93   8e-20
At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S ...    71   4e-13
At1g06440.1 68414.m00682 expressed protein                             29   2.5  
At3g56790.1 68416.m06316 RNA splicing factor-related contains we...    28   3.3  

>At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S
           RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
           swissprot:Q92365
          Length = 112

 Score = 94.7 bits (225), Expect = 3e-20
 Identities = 51/96 (53%), Positives = 63/96 (65%)
 Frame = +3

Query: 132 VGLRKGHKTTKISAGRKGITDKAIRXRPARLKGLQTKHSKFVRDLLREVVGHAQYEKRAM 311
           VGL KGH  T+          + +  RP   KG  +K + F+R+L++EV G A YEKR  
Sbjct: 12  VGLNKGHVVTR----------RELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 61

Query: 312 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELINVL 419
           ELLKV KDKRALK  KR+LGTH RAKRKREE+ +VL
Sbjct: 62  ELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVL 97


>At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A)
          Length = 113

 Score = 93.9 bits (223), Expect = 6e-20
 Identities = 52/96 (54%), Positives = 62/96 (64%)
 Frame = +3

Query: 132 VGLRKGHKTTKISAGRKGITDKAIRXRPARLKGLQTKHSKFVRDLLREVVGHAQYEKRAM 311
           VGL KGH  T+          + +  RP   KG  +K + F+R L+REV G A YEKR  
Sbjct: 12  VGLNKGHVVTR----------RELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRIT 61

Query: 312 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELINVL 419
           ELLKV KDKRALK  KR+LGTH RAKRKREE+ +VL
Sbjct: 62  ELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVL 97


>At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S
           ribosomal protein L36, Arabidopsis thaliana,
           EMBL:AC004684
          Length = 108

 Score = 93.5 bits (222), Expect = 8e-20
 Identities = 52/96 (54%), Positives = 62/96 (64%)
 Frame = +3

Query: 132 VGLRKGHKTTKISAGRKGITDKAIRXRPARLKGLQTKHSKFVRDLLREVVGHAQYEKRAM 311
           VGL KGH  TK          +    RP   KG  +K + F+R+L++EV G A YEKR  
Sbjct: 8   VGLNKGHVVTK----------REQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 57

Query: 312 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELINVL 419
           ELLKV KDKRALK  KR+LGTH RAKRKREE+ +VL
Sbjct: 58  ELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVL 93


>At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S
           RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
           swissprot:Q92365
          Length = 103

 Score = 71.3 bits (167), Expect = 4e-13
 Identities = 44/96 (45%), Positives = 57/96 (59%)
 Frame = +3

Query: 132 VGLRKGHKTTKISAGRKGITDKAIRXRPARLKGLQTKHSKFVRDLLREVVGHAQYEKRAM 311
           VGL KGH  T+          + +  RP   KG  +K + F+R+L++EV G A YEKR  
Sbjct: 12  VGLNKGHVVTR----------RELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 61

Query: 312 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELINVL 419
           ELLKV+         KR+LGTH RAKRKREE+ +VL
Sbjct: 62  ELLKVA---------KRKLGTHKRAKRKREEMSSVL 88


>At1g06440.1 68414.m00682 expressed protein
          Length = 390

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +1

Query: 247 PSLSVIYYAKLSDTLNMRRGLWSYLR 324
           PSLS+ + ++LS  L++ RG  S+LR
Sbjct: 69  PSLSIEFLSRLSQKLHLNRGAASFLR 94


>At3g56790.1 68416.m06316 RNA splicing factor-related contains weak
           similarity to U4/U6-associated RNA splicing factor [Homo
           sapiens] gi|2853287|gb|AAC09069
          Length = 206

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 9/108 (8%)
 Frame = +3

Query: 123 EIAVGLRKGHKTTKISAGRKGITDKAIRX--RPARLKGLQTKHSKFVRDLLREVVGHAQ- 293
           E+A+     HK TK    R  +  + I        L  L   ++K  +D+ + ++   Q 
Sbjct: 88  ELAIDTAVAHKQTKGFFLRVDVLGREIDEYGHVINLSTLMVNNNKHKKDVFQNILKPPQP 147

Query: 294 ------YEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELINVL 419
                  EK+   L +V+K+K   K +++ L    ++K K   L+ VL
Sbjct: 148 FKLTKKEEKKLQTLRRVAKEKEKQKMIRQALFEPQKSKVKLSNLMKVL 195


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,895,014
Number of Sequences: 28952
Number of extensions: 137023
Number of successful extensions: 366
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)